NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1057716965|gb|AOE45992|]
View 

pectate lyase [Bacillus subtilis]

Protein Classification

polysaccharide lyase family 1 protein( domain architecture ID 10008084)

polysaccharide lyase family 1 protein such as pectate lyase that catalyzes the eliminative cleavage of pectate to yield oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at the non-reducing ends, and pectin lyase that catalyzes the eliminative cleavage of the methyl ester pectin

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
3-419 6.48e-85

Pectate lyase [Carbohydrate transport and metabolism];


:

Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 262.23  E-value: 6.48e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965   3 KVMLATALFLGLTPAGVNAA----DLGHQTLGSNDGWGAYSTGTTGGAKASssnVYTVSNRNQLVSALgkeTNTTPKIIY 78
Cdd:COG3866     2 KLLLVLLLALAASAATAGAAtavpDAAAAAAPAPEGFASVNGGTTGGAGGT---VVTVTTLADLRAAL---EASGPRIIV 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  79 IKGTIDMNvddnlkplglndykdpeydldkylkaydpstwgkkepsgtqeeararsqknqkaRVMVDIPANTTIVGSGTN 158
Cdd:COG3866    76 VSGTIDLS------------------------------------------------------KSPLKVNSNKTIAGQGDG 101

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 159 AKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDptdgssgnwnsqyDNITINGGTHIWIDHCTFNDGsrpdstspkyyg 237
Cdd:COG3866   102 ATITGGGLNIKgASNVIIRNLRFRNGDDGGGSGG-------------DAIGIEGAHNVWIDHCTFSWG------------ 156

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 238 rkyqhHDGQTDASNGANYITMSYNYYH----DHDKSSIFGSSDSKTsdDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYN 313
Cdd:COG3866   157 -----YDGLLDIKRGSDNVTVSWNIFAegkgDHGKGMLIGSSDSDT--TGKLRVTFHHNLFANNDSRNPRVRFGQVHVYN 229

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 314 NYYEGSTSsssypfSYAWGIGKSSKIYAQNNV-IDVPGLSAAKTISVFSGGTALYDSGTLLngtqINASAANGLSSSVGW 392
Cdd:COG3866   230 NYFYNWGN------NYGIGSGGGAQVLVENNYfENVKGPLATSDGSSLLDPGYLYARGNVF----DNSTGTAPAGSGTVF 299

                         410       420
                  ....*....|....*....|....*..
gi 1057716965 393 TPSLHGSIDASANVKSNVINQAGAGNL 419
Cdd:COG3866   300 TPPYSYTLDPASDVKTLVLAGAGAGKL 326
 
Name Accession Description Interval E-value
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
3-419 6.48e-85

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 262.23  E-value: 6.48e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965   3 KVMLATALFLGLTPAGVNAA----DLGHQTLGSNDGWGAYSTGTTGGAKASssnVYTVSNRNQLVSALgkeTNTTPKIIY 78
Cdd:COG3866     2 KLLLVLLLALAASAATAGAAtavpDAAAAAAPAPEGFASVNGGTTGGAGGT---VVTVTTLADLRAAL---EASGPRIIV 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  79 IKGTIDMNvddnlkplglndykdpeydldkylkaydpstwgkkepsgtqeeararsqknqkaRVMVDIPANTTIVGSGTN 158
Cdd:COG3866    76 VSGTIDLS------------------------------------------------------KSPLKVNSNKTIAGQGDG 101

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 159 AKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDptdgssgnwnsqyDNITINGGTHIWIDHCTFNDGsrpdstspkyyg 237
Cdd:COG3866   102 ATITGGGLNIKgASNVIIRNLRFRNGDDGGGSGG-------------DAIGIEGAHNVWIDHCTFSWG------------ 156

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 238 rkyqhHDGQTDASNGANYITMSYNYYH----DHDKSSIFGSSDSKTsdDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYN 313
Cdd:COG3866   157 -----YDGLLDIKRGSDNVTVSWNIFAegkgDHGKGMLIGSSDSDT--TGKLRVTFHHNLFANNDSRNPRVRFGQVHVYN 229

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 314 NYYEGSTSsssypfSYAWGIGKSSKIYAQNNV-IDVPGLSAAKTISVFSGGTALYDSGTLLngtqINASAANGLSSSVGW 392
Cdd:COG3866   230 NYFYNWGN------NYGIGSGGGAQVLVENNYfENVKGPLATSDGSSLLDPGYLYARGNVF----DNSTGTAPAGSGTVF 299

                         410       420
                  ....*....|....*....|....*..
gi 1057716965 393 TPSLHGSIDASANVKSNVINQAGAGNL 419
Cdd:COG3866   300 TPPYSYTLDPASDVKTLVLAGAGAGKL 326
Amb_all smart00656
Amb_all domain;
144-350 4.35e-63

Amb_all domain;


Pssm-ID: 214765  Cd Length: 190  Bit Score: 201.35  E-value: 4.35e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYfpqwdptdgssgnWNSQYDNITINGGTHIWIDHCTF 222
Cdd:smart00656  12 IIINSNKTIDGRGSKVEIKGGGLTIKsVSNVIIRNLTIHDPKPV-------------YGSDGDAISIDGSSNVWIDHVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  223 NDGsrpdstspKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDgKLKITLHHNRYKNIVQRAP 302
Cdd:smart00656  79 SGC--------TVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG-KMRVTIAHNYFGNLRQRAP 149

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1057716965  303 RVRFGQVHVYNNYYEGSTssssypfSYAWGIGKSSKIYAQNNVIDVPG 350
Cdd:smart00656 150 RVRFGYVHVYNNYYTGWT-------SYAIGGRMGATILSEGNYFEAPI 190
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
 130-345 2.25e-40

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


Pssm-ID: 366158  Cd Length: 211  Bit Score: 143.12  E-value: 2.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 130 ARARSQKNQKARVMVDIPANTTIVGS-GTNAKVVGGNFQI--KSDNVIIRNIEFQDaydyfpqwdpTDGssgnWNSQYDN 206
Cdd:pfam00544  16 AAYANFCDQKARSQIGVPSNTTIIGIiGTNGKFTNFGSLIikGSSNVIVRNLYIGT----------PDG----WNKDWDA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 207 ITINGGTHIWIDHCTFNDGSRPDSTSPKyygrKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTS-DDGKL 285
Cdd:pfam00544  82 IRIDNSPNVWVDHVTISDGSFTDDGYTT----KYVQHDGALDIKKGSDYVTISYSLFHGHKKTGLIGHSDDNNSqDTGKL 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 286 KITLHHNRYKNIVQRAPRVRFGQVHVYNNYYegstsssSYPFSYAWGIGKSSKIYAQNNV 345
Cdd:pfam00544 158 RVTYHHNVYNRVTERAPLVRYGSIHAYNNVY-------VNIYLYSFGVGQNGSVLSESNS 210
 
Name Accession Description Interval E-value
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
3-419 6.48e-85

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 262.23  E-value: 6.48e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965   3 KVMLATALFLGLTPAGVNAA----DLGHQTLGSNDGWGAYSTGTTGGAKASssnVYTVSNRNQLVSALgkeTNTTPKIIY 78
Cdd:COG3866     2 KLLLVLLLALAASAATAGAAtavpDAAAAAAPAPEGFASVNGGTTGGAGGT---VVTVTTLADLRAAL---EASGPRIIV 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  79 IKGTIDMNvddnlkplglndykdpeydldkylkaydpstwgkkepsgtqeeararsqknqkaRVMVDIPANTTIVGSGTN 158
Cdd:COG3866    76 VSGTIDLS------------------------------------------------------KSPLKVNSNKTIAGQGDG 101

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 159 AKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDptdgssgnwnsqyDNITINGGTHIWIDHCTFNDGsrpdstspkyyg 237
Cdd:COG3866   102 ATITGGGLNIKgASNVIIRNLRFRNGDDGGGSGG-------------DAIGIEGAHNVWIDHCTFSWG------------ 156

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 238 rkyqhHDGQTDASNGANYITMSYNYYH----DHDKSSIFGSSDSKTsdDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYN 313
Cdd:COG3866   157 -----YDGLLDIKRGSDNVTVSWNIFAegkgDHGKGMLIGSSDSDT--TGKLRVTFHHNLFANNDSRNPRVRFGQVHVYN 229

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 314 NYYEGSTSsssypfSYAWGIGKSSKIYAQNNV-IDVPGLSAAKTISVFSGGTALYDSGTLLngtqINASAANGLSSSVGW 392
Cdd:COG3866   230 NYFYNWGN------NYGIGSGGGAQVLVENNYfENVKGPLATSDGSSLLDPGYLYARGNVF----DNSTGTAPAGSGTVF 299

                         410       420
                  ....*....|....*....|....*..
gi 1057716965 393 TPSLHGSIDASANVKSNVINQAGAGNL 419
Cdd:COG3866   300 TPPYSYTLDPASDVKTLVLAGAGAGKL 326
Amb_all smart00656
Amb_all domain;
144-350 4.35e-63

Amb_all domain;


Pssm-ID: 214765  Cd Length: 190  Bit Score: 201.35  E-value: 4.35e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYfpqwdptdgssgnWNSQYDNITINGGTHIWIDHCTF 222
Cdd:smart00656  12 IIINSNKTIDGRGSKVEIKGGGLTIKsVSNVIIRNLTIHDPKPV-------------YGSDGDAISIDGSSNVWIDHVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965  223 NDGsrpdstspKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDgKLKITLHHNRYKNIVQRAP 302
Cdd:smart00656  79 SGC--------TVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG-KMRVTIAHNYFGNLRQRAP 149

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1057716965  303 RVRFGQVHVYNNYYEGSTssssypfSYAWGIGKSSKIYAQNNVIDVPG 350
Cdd:smart00656 150 RVRFGYVHVYNNYYTGWT-------SYAIGGRMGATILSEGNYFEAPI 190
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
 130-345 2.25e-40

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


Pssm-ID: 366158  Cd Length: 211  Bit Score: 143.12  E-value: 2.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 130 ARARSQKNQKARVMVDIPANTTIVGS-GTNAKVVGGNFQI--KSDNVIIRNIEFQDaydyfpqwdpTDGssgnWNSQYDN 206
Cdd:pfam00544  16 AAYANFCDQKARSQIGVPSNTTIIGIiGTNGKFTNFGSLIikGSSNVIVRNLYIGT----------PDG----WNKDWDA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 207 ITINGGTHIWIDHCTFNDGSRPDSTSPKyygrKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTS-DDGKL 285
Cdd:pfam00544  82 IRIDNSPNVWVDHVTISDGSFTDDGYTT----KYVQHDGALDIKKGSDYVTISYSLFHGHKKTGLIGHSDDNNSqDTGKL 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057716965 286 KITLHHNRYKNIVQRAPRVRFGQVHVYNNYYegstsssSYPFSYAWGIGKSSKIYAQNNV 345
Cdd:pfam00544 158 RVTYHHNVYNRVTERAPLVRYGSIHAYNNVY-------VNIYLYSFGVGQNGSVLSESNS 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH