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Conserved domains on  [gi|1078191061|gb|AOV83552|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Crocuta crocuta]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.11e-64

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 191.31  E-value: 1.11e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078191061  81 TNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.11e-64

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 191.31  E-value: 1.11e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078191061  81 TNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-112 4.37e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 4.37e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061  19 LIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNDLSTM-LTMALLLISL 97
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 1078191061  98 LAASLAYEWTQKGLE 112
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-78 1.19e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.08  E-value: 1.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQL----NVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLP 76
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSRLlgpkRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FP 79


                  ..
gi 1078191061  77 WA 78
Cdd:COG0838    80 WA 81
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.11e-64

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 191.31  E-value: 1.11e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078191061  81 TNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.75e-48

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 150.45  E-value: 1.75e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMA-LLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136    1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1078191061  80 QTNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 6.19e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 146.29  E-value: 6.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   3 MMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1078191061  83 DLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 1.13e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 133.08  E-value: 1.13e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1078191061  81 TNDLSTMLTMALLLISLLAASLAYEWTQKGLEWA 114
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 3.55e-37

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 122.01  E-value: 3.55e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078191061  81 TNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 3.81e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 111.53  E-value: 3.81e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   3 MMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1078191061  83 DLSTMLTMalLLISLLAASLAYEWTQKGLEW 113
Cdd:MTH00203   84 SLSLLLAF--LFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-112 4.37e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 4.37e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061  19 LIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNDLSTM-LTMALLLISL 97
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 1078191061  98 LAASLAYEWTQKGLE 112
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 2.43e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 89.15  E-value: 2.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYA-EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1078191061  80 QTNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 2.05e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 86.75  E-value: 2.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   2 NMMMALLINTALSTLLALIAFWL-PQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1078191061  81 TNDLSTMLTMALLLISLLAASLAYEWTQKGLEW 113
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-115 8.13e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 82.73  E-value: 8.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYA--EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMdrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1078191061  79 SQTNDLSTMLTMALLLISLLAASLAYEWTQKGLEWAE 115
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-113 5.04e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 78.21  E-value: 5.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00055    6 LGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1078191061  81 TNDLSTMLTMaLLLISLLAASLAYEWTQKGLEW 113
Cdd:MTH00055   86 QIGLFGFWVM-YLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 9.17e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.59  E-value: 9.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYA--EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTAdrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1078191061  79 SQTNDLSTMLTMALLLISLLAASLAYEWTQKGLEWA 114
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-78 1.19e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.08  E-value: 1.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQL----NVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLP 76
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSRLlgpkRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FP 79


                  ..
gi 1078191061  77 WA 78
Cdd:COG0838    80 WA 81
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 1.68e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 69.32  E-value: 1.68e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQ 80
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1078191061  81 TNDLSTM-LTMALLLISLLAASLAYEWTQKGLEW 113
Cdd:MTH00018   79 YNQIAPFgFWTMVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 4.39e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 68.35  E-value: 4.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061   7 LLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNDLS- 85
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGw 92

                          90       100
                  ....*....|....*....|....*....
gi 1078191061  86 TMLTMALLLISLLAASLAYEWTQKGLEWA 114
Cdd:PRK06602   93 LGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 6.54e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 63.03  E-value: 6.54e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061  31 AEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNDLSTM-LTMALLLISLLAASLAYEWTQK 109
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFsFWIVYTFLIVLAIGLAYEWIKG 118


                  ....
gi 1078191061 110 GLEW 113
Cdd:MTH00030  119 GLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 1.48e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 48.90  E-value: 1.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061  33 KASPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWASQTNDLSTM-LTMALLLISLLAASLAYEWTQK 109
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFgLVEMALFMLTVFVAYAYVWRRG 114


                  ....
gi 1078191061 110 GLEW 113
Cdd:PRK07928  115 GLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 13-84 9.67e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 46.52  E-value: 9.67e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1078191061  13 LSTLLALIAFWLPQL----NVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNDL 84
Cdd:CHL00022   16 ISSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVL 89
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 1.25e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 46.04  E-value: 1.25e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1078191061   1 MNMMMALLINTALSTLLALIAFWLPQLNVYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
31-113 4.26e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 42.42  E-value: 4.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061  31 AEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWASQTNDLSTM-LTMALLLISLLAASLAYEWTQK 109
Cdd:PRK07756   40 AAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFaLIEMLIFVVMLLVGLAYAWKKK 117


                  ....
gi 1078191061 110 GLEW 113
Cdd:PRK07756  118 VLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 2.89e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.88  E-value: 2.89e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1078191061  35 SPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 1.74e-03

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 35.41  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078191061  33 KASPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNDLSTM-LTMALLLISLLAASLAYEWTQKGL 111
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGAL 123


                  ..
gi 1078191061 112 EW 113
Cdd:PRK08489  124 EW 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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