NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1154744545|gb|AQY14633|]
View 

cytochrome b, partial (mitochondrion) [Liobagrus anguillicauda]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 781.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00131   11 LKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00131   91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00131  251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVA 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00131  331 DVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 781.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00131   11 LKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00131   91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00131  251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVA 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00131  331 DVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
8-363 2.89e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 370.66  E-value: 2.89e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   8 LIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 87
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  88 IGRGLYYGSylYKE----TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNA 163
Cdd:COG1290   107 MFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 164 TLTRFFAFH-FLLPFAIIAATLLHALFLHETGSNNPLG----LNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPN 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 239 llGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFW 316
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 317 TLVADVFILTWIGGMPVehPFIIIGQIASVLYFSLFLIINPLIGWLE 363
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-196 5.04e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 5.04e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:cd00284     3 LIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSY--LYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGF 158
Cdd:cd00284    83 FLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGF 162

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1154744545 159 SVDNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSN 196
Cdd:cd00284   163 SVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
8-194 1.79e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 254.23  E-value: 1.79e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   8 LIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 87
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  88 IGRGLYYG--SYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATL 165
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1154744545 166 TRFFAFHFLLPFAIIAATLLHALFLHETG 194
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 226-320 7.64e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 7.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 226 ITALTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHT-SKQQG 304
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|....*...
gi 1154744545 305 LTFRPL--TQLLFWTLVA 320
Cdd:TIGR01156 123 PFRRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 781.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00131   11 LKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00131   91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00131  251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVA 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00131  331 DVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
CYTB MTH00119
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 722.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00119   12 LKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00119   92 FICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00119  172 DNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00119  252 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVA 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00119  332 NLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
CYTB MTH00074
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 694.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00074   12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00074   92 FICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00074  172 DKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00074  252 GDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVA 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00074  332 NTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
CYTB MTH00100
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 682.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00100   11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00100   91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00100  171 DKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00100  251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVA 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00100  331 DLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00191
cytochrome b; Provisional
 1-358 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 657.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00191    8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00191   88 FICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00191  168 DNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLL 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00191  248 GDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVA 327

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPL 358
Cdd:MTH00191  328 NFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 643.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLII 355
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 1-368 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 613.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00034   11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00034   91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00034  171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00034  251 NDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIA 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLLI 368
Cdd:MTH00034  331 TFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 2-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 608.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   2 KIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFF 81
Cdd:MTH00145   13 KVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  82 ICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVD 161
Cdd:MTH00145   93 ICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVG 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 162 NATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLLG 241
Cdd:MTH00145  173 NATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLG 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 242 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVAD 321
Cdd:MTH00145  253 DPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGN 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1154744545 322 VFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIInPLIGWLENKLL 367
Cdd:MTH00145  333 FFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-367 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 562.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00016   12 IKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00016   92 FICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00016  172 DNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNIL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00016  252 GDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVS 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFlIINPLIGWLENKLL 367
Cdd:MTH00016  332 NFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYF-MINPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 2-367 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 525.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   2 KIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFF 81
Cdd:MTH00022   11 SIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  82 ICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVD 161
Cdd:MTH00022   91 LCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 162 NATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLLG 241
Cdd:MTH00022  171 NATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLG 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 242 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVAD 321
Cdd:MTH00022  251 DPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVD 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1154744545 322 VFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00022  331 FILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 1-367 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 516.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:MTH00053   12 ISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSV 160
Cdd:MTH00053   92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 161 DNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00053  172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00053  252 GDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVG 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIINPLIGWLENKLL 367
Cdd:MTH00053  332 DFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
CYTB MTH00224
cytochrome b; Provisional
 2-368 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 509.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   2 KIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFF 81
Cdd:MTH00224   13 KILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  82 ICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVD 161
Cdd:MTH00224   93 LFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVD 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 162 NATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLLG 241
Cdd:MTH00224  173 NATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFT 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 242 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVAD 321
Cdd:MTH00224  253 DPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTS 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 322 VFILTWIGGMPVEHPFIIIGQIASVLYFSLFlIINPLIGWLENKLLI 368
Cdd:MTH00224  333 WAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 6-364 7.92e-142

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 407.79  E-value: 7.92e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   6 DALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 85
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  86 LHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATL 165
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 166 TRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFS--PNLLGDP 243
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 244 ENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVADVF 323
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1154744545 324 ILTWIGGMPV-EHPFIIIGQIASVLYFSLFLIINPLIGWLEN 364
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
8-363 2.89e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 370.66  E-value: 2.89e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   8 LIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 87
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  88 IGRGLYYGSylYKE----TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNA 163
Cdd:COG1290   107 MFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 164 TLTRFFAFH-FLLPFAIIAATLLHALFLHETGSNNPLG----LNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPN 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 239 llGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFW 316
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1154744545 317 TLVADVFILTWIGGMPVehPFIIIGQIASVLYFSLFLIINPLIGWLE 363
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 2-355 2.18e-125

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 364.65  E-value: 2.18e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   2 KIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFF 81
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  82 ICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVD 161
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 162 NATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITaLTSLALFSPNLLG 241
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 242 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQqglTFRPLTQLLFWTLVAD 321
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1154744545 322 VFILTWIGGMPVEHPFIIIGQIASVLYFSLFLII 355
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-196 5.04e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 5.04e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   1 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFF 80
Cdd:cd00284     3 LIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  81 FICIYLHIGRGLYYGSY--LYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGF 158
Cdd:cd00284    83 FLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGF 162

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1154744545 159 SVDNATLTRFFAFHFLLPFAIIAATLLHALFLHETGSN 196
Cdd:cd00284   163 SVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-354 7.81e-92

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 279.18  E-value: 7.81e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   2 KIVNDALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFF 81
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  82 ICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVD 161
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 162 NATLTRFFAFHFLLPFAIIAATLLHALFLHETGSNNPLGL-NSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLL 240
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 241 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILILMVVPllhtSKQQGLTFRPLTQLLFWTLVA 320
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVS 317

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1154744545 321 DVFILTWIGGMPVEHPFIIIGQIASVLYFSLFLI 354
Cdd:MTH00046  318 LFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
8-194 1.79e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 254.23  E-value: 1.79e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545   8 LIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 87
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  88 IGRGLYYG--SYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATL 165
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1154744545 166 TRFFAFHFLLPFAIIAATLLHALFLHETG 194
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 197-344 6.24e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 169.36  E-value: 6.24e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 197 NPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 276
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1154744545 277 KLGGVLALLFSILILMVVPLLHTSKQQGlTFRPLTQLLFWTLVADVFILTWIGGMPVEHPFIIIGQIA 344
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
78-243 1.60e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 161.64  E-value: 1.60e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  78 SFFFICIYLHIGRGLYYGSYLYKE--TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIW 155
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 156 GGFSVDNATLTRFFAFHF-LLPFAIIAATLLHALFLHETGSNNPLGLNSNADKISFHPYFSYKDLLGFIMLITALTSLAL 234
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1154744545 235 FSPNLLGDP 243
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
248-348 2.04e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 153.40  E-value: 2.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 248 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHTSKQQGLTFRPLTQLLFWTLVADVFILTW 327
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1154744545 328 IGGMPVEHPFIIIGQIASVLY 348
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-199 7.99e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 140.62  E-value: 7.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  23 FGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 101
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 102 -TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFAI 179
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1154744545 180 IAATLLHALFLHETGSNNPL 199
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 14-199 8.34e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 121.75  E-value: 8.34e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  14 PSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLHIGRGLY 93
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545  94 YGSYLYKE--TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAF 171
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1154744545 172 H-FLLPFAIIAATLLHALFLHETGSNNPL 199
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 226-320 6.11e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.10  E-value: 6.11e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 226 ITALTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLL-HTSKQQG 304
Cdd:CHL00058   48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                          90
                  ....*....|....*...
gi 1154744545 305 LTFRP--LTQLLFWTLVA 320
Cdd:CHL00058  123 PFRRPvaTTVFLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 219-319 3.27e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.96  E-value: 3.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 219 LLGFIMLITALtslALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLH 298
Cdd:COG5679    45 ILGTIALCIGL---AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                          90       100
                  ....*....|....*....|....
gi 1154744545 299 T-SKQQGLTFRPL--TQLLFWTLV 319
Cdd:COG5679   117 NvNKFQNPFRRPVatAVFLFGTLV 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 226-320 7.64e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 7.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1154744545 226 ITALTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMVVPLLHT-SKQQG 304
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|....*...
gi 1154744545 305 LTFRPL--TQLLFWTLVA 320
Cdd:TIGR01156 123 PFRRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH