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Conserved domains on  [gi|1180566858|gb|ARI46694|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Hypophthalmichthys nobilis x Hypophthalmichthys molitrix]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.78e-78

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 226.34  E-value: 1.78e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1180566858  81 QLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.78e-78

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 226.34  E-value: 1.78e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1180566858  81 QLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 1.51e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 106.74  E-value: 1.51e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858  20 IVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQL-HNPTGTFFWATTVLIL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 1180566858  99 LTLGLIYEWTQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 8.02e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.88  E-value: 8.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   8 LTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLHNPTG 87
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGW 89

                          90       100
                  ....*....|....*....|....*...
gi 1180566858  88 TFFWATTV-LILLTLGLIYEWTQGGLEW 114
Cdd:COG0838    90 FGLIEMLVfIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.78e-78

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 226.34  E-value: 1.78e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1180566858  81 QLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 2.20e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 188.28  E-value: 2.20e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   3 LIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82
Cdd:MTH00069    1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1180566858  83 HNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 1.80e-56

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 170.45  E-value: 1.80e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   2 NLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1180566858  82 LHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 1.90e-53

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 163.19  E-value: 1.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTiLTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00106    1 MNLMLT-LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1180566858  81 QLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 1.37e-45

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 143.20  E-value: 1.37e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1180566858  81 QLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 6.72e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 138.88  E-value: 6.72e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1180566858  81 QLHNPtgTFFWATTVLILLTLGLIYEWTQGGLEW 114
Cdd:MTH00203   81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 4.18e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 109.18  E-value: 4.18e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGA-EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1180566858  80 DQLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 9.55e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 107.94  E-value: 9.55e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   3 LIMTILTITVALSSILAIVSFWL-PQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQ 81
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1180566858  82 LHNPTGTFFWATTVLILLTLGLIYEWTQGGLEW 114
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 1.51e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 106.74  E-value: 1.51e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858  20 IVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQL-HNPTGTFFWATTVLIL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 1180566858  99 LTLGLIYEWTQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-114 1.86e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 102.48  E-value: 1.86e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   4 IMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLH 83
Cdd:MTH00055    8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYN 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1180566858  84 NPTGTFFWATTV-LILLTLGLIYEWTQGGLEW 114
Cdd:MTH00055   86 QIGLFGFWVMYLfLIILTIGLIYEWVKGGLEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 2.79e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 99.30  E-value: 2.79e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLP-QMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSfRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1180566858  80 DQLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-115 3.52e-27

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 96.47  E-value: 3.52e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   8 LTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLHNPTG 87
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGW 92

                          90       100
                  ....*....|....*....|....*....
gi 1180566858  88 TFFWATTVLIL-LTLGLIYEWTQGGLEWA 115
Cdd:PRK06602   93 LGFVEAMIFILvLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-114 4.18e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 93.59  E-value: 4.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   4 IMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLH 83
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1180566858  84 NPTGtfFWATTV-LILLTLGLIYEWTQGGLEW 114
Cdd:MTH00018   83 APFG--FWTMVGfLFILTLGLIYEWIKGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 8.02e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.88  E-value: 8.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   8 LTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLHNPTG 87
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGW 89

                          90       100
                  ....*....|....*....|....*...
gi 1180566858  88 TFFWATTV-LILLTLGLIYEWTQGGLEW 114
Cdd:COG0838    90 FGLIEMLVfIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 1.43e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 84.91  E-value: 1.43e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLP-QMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAaRSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1180566858  80 DQLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 30-114 4.90e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 76.12  E-value: 4.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858  30 PGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLHNPTGTFFWAT-TVLILLTLGLIYEWT 108
Cdd:MTH00030   39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFSFWIVyTFLIVLAIGLAYEWI 116


                  ....*.
gi 1180566858 109 QGGLEW 114
Cdd:MTH00030  117 KGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 14-114 1.65e-13

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 61.54  E-value: 1.65e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858  14 LSSILAIVSFWLPQM----NPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWG---DQLHNPt 86
Cdd:CHL00022   16 ISSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAmsfDVLGVS- 92

                          90       100
                  ....*....|....*....|....*...
gi 1180566858  87 gTFFWATTVLILLTLGLIYEWTQGGLEW 114
Cdd:CHL00022   93 -AFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 1-114 2.68e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.83  E-value: 2.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILtITVALSSILAIVSFWLPQM----NPGAEKLSPYECGFDPLGSARLP--FSLRFFLVAILFLLFDLEIALLL 74
Cdd:PRK07928    1 MNVYIPIL-VLGALAAAFAVVSVVVASLvgpkRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1180566858  75 PlpWGDQLhNPTGTFFWATTVLILLTLGL--IYEWTQGGLEW 114
Cdd:PRK07928   80 P--WAVSF-DALGVFGLVEMALFMLTVFVayAYVWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
3-114 2.39e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.90  E-value: 2.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   3 LIMTILTITVALSsilaiVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPlpWGdQL 82
Cdd:PRK07756   16 LLLGILLPVVALT-----LGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WA-VA 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1180566858  83 HNPTGTFFWATTVL--ILLTLGLIYEWTQGGLEW 114
Cdd:PRK07756   88 YDKLGLFALIEMLIfvVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-114 5.00e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 50.44  E-value: 5.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   3 LIMTILTITVALSSIlaiVSFWLPQMNPGAEKLSPYECGFDPLGSARlPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82
Cdd:PRK08489   19 LTFVAFFLTTRLARF---ISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKL 94

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1180566858  83 hnpTGTFFWATTVL--ILLTLGLIYEWTQGGLEW 114
Cdd:PRK08489   95 ---LGLFGLIEMLLfiVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 2.32e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 45.66  E-value: 2.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180566858   1 MNLIMTILTITVALSSILAIVSFWLPQMNPGAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgd 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1180566858  81 qLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEW 114
Cdd:MTH00092   77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-114 7.62e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 44.12  E-value: 7.62e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1180566858  36 SPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLHNptgTFFWATTVLILLTLGLIYEWTQGGLEW 114
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFY---NFWYYYFFLLLLFLGFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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