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Conserved domains on  [gi|1194717304|gb|ARS01574|]
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maturase K, partial (chloroplast) [Ormosia velutina]

Protein Classification

maturase K( domain architecture ID 11413986)

maturase K probably assists in splicing its own and other chloroplast group II introns

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
matK CHL00002
maturase K
1-343 0e+00

maturase K


:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 626.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304   1 LRYWVKDAPFFHLLRFVLYEYCNWNTFITPKKSISTFSKSNPRFFLFLYNFYVFEYESILLFLHNKSSHLRLISFSILFE 80
Cdd:CHL00002  163 LRYWIKDASSLHLLRFFLHEYCNWNSLITSKKSISFFSKENQRLFLFLYNSYVCEYESIFVFLRKQSSHLRSTSSGVFLE 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304  81 RIYFYAKIEHLVEVFAKDFSSTLSFFKDPFIHYVRYRGKSILVSKNVPLLMNKWKYYLIDLWQCHFDVWSQPGTIHINQL 160
Cdd:CHL00002  243 RIHFYGKIEHLVEVFRNDFQKTLWLFKDPFIHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFHLWSQPGRIHINQL 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 161 FEHSFHFLGYFSNVRLNLSVVRSQMLENSFLIEIVMKKLDTIVPIIPIIRLLAKAKFCNVLGHPISKPIRADSSDFDIID 240
Cdd:CHL00002  323 SNHSFDFLGYLSSVRLNPSVVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWTDLSDSDIID 402
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 241 RFLRICRNLSHYYNGSSKKKSLYRIKYILRLSCIKTLARKHKSTVRAFLKRLGSEkLLEEFFTEEEEILSLIFPRASSTF 320
Cdd:CHL00002  403 RFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSE-LLEEFFTEEEQVLSLIFPRTSSTS 481
                         330       340
                  ....*....|....*....|...
gi 1194717304 321 QRLYRGRIWYLDIIFSNDLVNHE 343
Cdd:CHL00002  482 RRLYRERIWYLDIICINDLVNHE 504
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
1-343 0e+00

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 626.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304   1 LRYWVKDAPFFHLLRFVLYEYCNWNTFITPKKSISTFSKSNPRFFLFLYNFYVFEYESILLFLHNKSSHLRLISFSILFE 80
Cdd:CHL00002  163 LRYWIKDASSLHLLRFFLHEYCNWNSLITSKKSISFFSKENQRLFLFLYNSYVCEYESIFVFLRKQSSHLRSTSSGVFLE 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304  81 RIYFYAKIEHLVEVFAKDFSSTLSFFKDPFIHYVRYRGKSILVSKNVPLLMNKWKYYLIDLWQCHFDVWSQPGTIHINQL 160
Cdd:CHL00002  243 RIHFYGKIEHLVEVFRNDFQKTLWLFKDPFIHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFHLWSQPGRIHINQL 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 161 FEHSFHFLGYFSNVRLNLSVVRSQMLENSFLIEIVMKKLDTIVPIIPIIRLLAKAKFCNVLGHPISKPIRADSSDFDIID 240
Cdd:CHL00002  323 SNHSFDFLGYLSSVRLNPSVVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWTDLSDSDIID 402
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 241 RFLRICRNLSHYYNGSSKKKSLYRIKYILRLSCIKTLARKHKSTVRAFLKRLGSEkLLEEFFTEEEEILSLIFPRASSTF 320
Cdd:CHL00002  403 RFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSE-LLEEFFTEEEQVLSLIFPRTSSTS 481
                         330       340
                  ....*....|....*....|...
gi 1194717304 321 QRLYRGRIWYLDIIFSNDLVNHE 343
Cdd:CHL00002  482 RRLYRERIWYLDIICINDLVNHE 504
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
1-169 2.20e-84

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 258.55  E-value: 2.20e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304   1 LRYWVKDAPFFHLLRFVLYEYCNWNTFITPKKSISTFSKSNPRFFLFLYNFYVFEYESILLFLHNKSSHLRLISFSILFE 80
Cdd:pfam01824 163 LRYWIKDASSLHLLRFFLHEYSNWNSFITSKKSISFFSKENPRLFLFLYNSYVYEYESFFVFLRKQSSHLRSTSYGVFLE 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304  81 RIYFYAKIEHLVEVFAKDFSSTLSFFKDPFIHYVRYRGKSILVSKNVPLLMNKWKYYLIDLWQCHFDVWSQPGTIHINQL 160
Cdd:pfam01824 243 RIYFYGKIEHFVEVFANDFQIILWLFKDPFMHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFYVWFQPGRIHINQL 322

                  ....*....
gi 1194717304 161 FEHSFHFLG 169
Cdd:pfam01824 323 SKHSFDFLG 331
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
1-343 0e+00

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 626.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304   1 LRYWVKDAPFFHLLRFVLYEYCNWNTFITPKKSISTFSKSNPRFFLFLYNFYVFEYESILLFLHNKSSHLRLISFSILFE 80
Cdd:CHL00002  163 LRYWIKDASSLHLLRFFLHEYCNWNSLITSKKSISFFSKENQRLFLFLYNSYVCEYESIFVFLRKQSSHLRSTSSGVFLE 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304  81 RIYFYAKIEHLVEVFAKDFSSTLSFFKDPFIHYVRYRGKSILVSKNVPLLMNKWKYYLIDLWQCHFDVWSQPGTIHINQL 160
Cdd:CHL00002  243 RIHFYGKIEHLVEVFRNDFQKTLWLFKDPFIHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFHLWSQPGRIHINQL 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 161 FEHSFHFLGYFSNVRLNLSVVRSQMLENSFLIEIVMKKLDTIVPIIPIIRLLAKAKFCNVLGHPISKPIRADSSDFDIID 240
Cdd:CHL00002  323 SNHSFDFLGYLSSVRLNPSVVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWTDLSDSDIID 402
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 241 RFLRICRNLSHYYNGSSKKKSLYRIKYILRLSCIKTLARKHKSTVRAFLKRLGSEkLLEEFFTEEEEILSLIFPRASSTF 320
Cdd:CHL00002  403 RFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSE-LLEEFFTEEEQVLSLIFPRTSSTS 481
                         330       340
                  ....*....|....*....|...
gi 1194717304 321 QRLYRGRIWYLDIIFSNDLVNHE 343
Cdd:CHL00002  482 RRLYRERIWYLDIICINDLVNHE 504
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
1-169 2.20e-84

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 258.55  E-value: 2.20e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304   1 LRYWVKDAPFFHLLRFVLYEYCNWNTFITPKKSISTFSKSNPRFFLFLYNFYVFEYESILLFLHNKSSHLRLISFSILFE 80
Cdd:pfam01824 163 LRYWIKDASSLHLLRFFLHEYSNWNSFITSKKSISFFSKENPRLFLFLYNSYVYEYESFFVFLRKQSSHLRSTSYGVFLE 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304  81 RIYFYAKIEHLVEVFAKDFSSTLSFFKDPFIHYVRYRGKSILVSKNVPLLMNKWKYYLIDLWQCHFDVWSQPGTIHINQL 160
Cdd:pfam01824 243 RIYFYGKIEHFVEVFANDFQIILWLFKDPFMHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFYVWFQPGRIHINQL 322

                  ....*....
gi 1194717304 161 FEHSFHFLG 169
Cdd:pfam01824 323 SKHSFDFLG 331
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
196-293 1.85e-28

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 107.56  E-value: 1.85e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194717304 196 MKKLDTIVPIIPIIRLLAKAKFCNV---LGHPISKPIRADSSDFDIIDRFLRICRNLSHYYNGSSKKKSLY-RIKYILRL 271
Cdd:pfam01348   1 TTRLVLNAPIRDIINKLAKAGFCKHyteKGKPRSVGRWTDLDDRDILLRYNAIIRGILNYYSFADNKKRLYtRIYYILRL 80
                          90       100
                  ....*....|....*....|...
gi 1194717304 272 SCIKTLARKHKS-TVRAFLKRLG 293
Cdd:pfam01348  81 SCAKTLARKLKLgTVRKVIKKFG 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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