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Conserved domains on  [gi|1196390830|gb|ARS73076|]
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cytochrome b, partial (mitochondrion) [Remiz pendulinus menzbieri]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-281 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 524.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00119   61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00119  141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119  221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00119  301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGS 341
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-281 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 524.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00119   61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00119  141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119  221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00119  301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGS 341
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-281 1.50e-92

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 278.98  E-value: 1.50e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSY-----LNketWNIGVILLLALMA*AFVGYVLP 75
Cdd:COG1290    69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLP 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  76 WGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLTFLHETGSNNPLGI-- 152
Cdd:COG1290   146 WDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPer 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 153 --PS*CDKIPFHPYYSTKDILGFVLMLALLVALALFSPNllGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIP--NK 228
Cdd:COG1290   226 kkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAK 303

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1196390830 229 LGGVLALAASVLVLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:COG1290   304 LGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGA 356
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-147 1.86e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 208.38  E-value: 1.86e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLN--KETWNIGVILLLALMA*AFVGYVLPWGQ 78
Cdd:cd00284    52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQ 131

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1196390830  79 MSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSN 147
Cdd:cd00284   132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-145 5.37e-59

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 186.43  E-value: 5.37e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYG--SYLNKETWNIGVILLLALMA*AFVGYVLPWGQ 78
Cdd:pfam00033  43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1196390830  79 MSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-281 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 524.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00119   61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00119  141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119  221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00119  301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGS 341
CYTB MTH00131
cytochrome b; Provisional
 1-280 1.39e-173

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 484.16  E-value: 1.39e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00131   60 STAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00131  140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00131  220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIL 299

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVG 280
Cdd:MTH00131  300 VLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIG 339
CYTB MTH00100
cytochrome b; Provisional
 1-281 5.54e-172

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 480.29  E-value: 5.54e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00100   60 TTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00100  140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00100  220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00100  300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG 340
CYTB MTH00074
cytochrome b; Provisional
 1-281 2.27e-166

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 466.08  E-value: 2.27e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00074   61 SSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00074  141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00074  221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIL 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00074  301 ILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGG 341
CYTB MTH00191
cytochrome b; Provisional
 1-280 1.16e-162

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 455.91  E-value: 1.16e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00191   57 SLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMS 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00191  137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00191  217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSIL 296

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVG 280
Cdd:MTH00191  297 VLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLG 336
CYTB MTH00156
cytochrome b; Provisional
 1-281 1.40e-161

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 452.70  E-value: 1.40e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00156   50 ELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00156  130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00156  210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIL 289

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00156  290 ILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGA 330
CYTB MTH00145
cytochrome b; Provisional
 1-281 7.04e-157

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 442.04  E-value: 7.04e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00145   61 DLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00145  141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00145  221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIV 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00145  301 ILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGA 341
CYTB MTH00034
cytochrome b; Validated
 1-281 8.59e-153

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 431.44  E-value: 8.59e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00034   60 SLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00034  140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00034  220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAIL 299

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00034  300 VLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGS 340
CYTB MTH00016
cytochrome b; Validated
 2-281 5.23e-151

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 426.79  E-value: 5.23e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   2 LAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMSF 81
Cdd:MTH00016   62 LAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  82 WGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIPF 161
Cdd:MTH00016  142 WGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 162 HPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVLV 241
Cdd:MTH00016  222 HPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILI 301

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1196390830 242 LFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00016  302 LFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGG 341
CYTB MTH00022
cytochrome b; Validated
 1-281 1.74e-129

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 372.50  E-value: 1.74e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00022   59 SLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00022  139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00022  219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSIL 298

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00022  299 ILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGS 339
CYTB MTH00053
cytochrome b; Provisional
 1-280 3.47e-127

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 366.72  E-value: 3.47e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00053   61 NLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00053  141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00053  221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSIL 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1196390830 241 VLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVG 280
Cdd:MTH00053  301 VLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIG 340
CYTB MTH00224
cytochrome b; Provisional
 2-280 5.00e-125

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 361.16  E-value: 5.00e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   2 LAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMSF 81
Cdd:MTH00224   62 MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  82 WGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIPF 161
Cdd:MTH00224  142 WGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 162 HPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVLV 241
Cdd:MTH00224  222 HPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILI 301

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1196390830 242 LFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVG 280
Cdd:MTH00224  302 LFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIG 340
CYTB MTH00033
cytochrome b; Provisional
 1-281 1.57e-100

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 299.16  E-value: 1.57e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00033   57 SLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00033  137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 161 FHPYYSTKDILGFVLMLALLVALALFS--PNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAAS 238
Cdd:MTH00033  217 FHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFAS 296

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1196390830 239 VLVLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00033  297 ILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGS 339
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-281 1.50e-92

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 278.98  E-value: 1.50e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSY-----LNketWNIGVILLLALMA*AFVGYVLP 75
Cdd:COG1290    69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLP 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  76 WGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLTFLHETGSNNPLGI-- 152
Cdd:COG1290   146 WDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPer 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 153 --PS*CDKIPFHPYYSTKDILGFVLMLALLVALALFSPNllGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIP--NK 228
Cdd:COG1290   226 kkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAK 303

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1196390830 229 LGGVLALAASVLVLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:COG1290   304 LGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGA 356
CYTB MTH00086
cytochrome b; Provisional
 1-238 1.26e-81

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 249.86  E-value: 1.26e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:MTH00086   49 SMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIP 160
Cdd:MTH00086  129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1196390830 161 FHPYYSTKDILGFvLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAAS 238
Cdd:MTH00086  209 FGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMS 285
CYTB MTH00046
cytochrome b; Validated
 16-281 9.26e-69

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 216.77  E-value: 9.26e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  16 FGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKETWNIGVILLLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIP 95
Cdd:MTH00046   66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVP 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  96 YIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSNNPLGIP-S*CDKIPFHPYYSTKDILGFV 174
Cdd:MTH00046  146 IVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSnGYSDVVYFHSYFTVKDLFLFM 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 175 LMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGvLALAASVLVLFLVPLLHTSKLR 254
Cdd:MTH00046  226 VVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVY 304

                         250       260
                  ....*....|....*....|....*..
gi 1196390830 255 SMtfrpLSQILFWALVANLLVLTWVGS 281
Cdd:MTH00046  305 SV----WRQVNFWLIVSLFFSLSYLGG 327
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-147 1.86e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 208.38  E-value: 1.86e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLN--KETWNIGVILLLALMA*AFVGYVLPWGQ 78
Cdd:cd00284    52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQ 131

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1196390830  79 MSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETGSN 147
Cdd:cd00284   132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-145 5.37e-59

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 186.43  E-value: 5.37e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   1 SLAFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYG--SYLNKETWNIGVILLLALMA*AFVGYVLPWGQ 78
Cdd:pfam00033  43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1196390830  79 MSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHETG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 148-281 4.60e-42

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 141.24  E-value: 4.60e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 148 NPLGIPS*CDKIPFHPYYSTKDILGFVLMLALLVALALFSPNLLGDPENFTPANPLSTPPHIKPE*YFLFAYAILRSIPN 227
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1196390830 228 KLGGVLALAASVLVLFLVPLLHTSKLRSmTFRPLSQILFWALVANLLVLTWVGS 281
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGI 133
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
29-194 8.98e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 133.52  E-value: 8.98e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830  29 SFFFICVYFHIGRGLYYGSYLNKE--TWNIGVILLLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMW 106
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 107 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPS*CDKIPFHPYYSTKDILGFVLMLALLVALAL 185
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1196390830 186 FSPNLLGDP 194
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
199-281 1.31e-31

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 112.96  E-value: 1.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830 199 PANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAASVLVLFLVPLLHTSKLRSMTFRPLSQILFWALVANLLVLTW 278
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80


                  ...
gi 1196390830 279 VGS 281
Cdd:pfam00032  81 LGK 83
PRK03735 PRK03735
cytochrome b6; Provisional
 3-150 9.19e-28

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 106.72  E-value: 9.19e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   3 AFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKE--TWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:PRK03735   73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLTFLHETGSNNPL 150
Cdd:PRK03735  153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 3-150 7.45e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.03  E-value: 7.45e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196390830   3 AFASVSHTC*NVQFGWLIRNLHANGASFFFICVYFHIGRGLYYGSYLNKE--TWNIGVILLLALMA*AFVGYVLPWGQMS 80
Cdd:CHL00070   65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1196390830  81 FWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLTFLHETGSNNPL 150
Cdd:CHL00070  145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 199-237 6.38e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 6.38e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1196390830 199 PANPLSTPPHIKPE*YFLFAYAILRSIPNKLGGVLALAA 237
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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