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Conserved domains on  [gi|1214146029|gb|ASH96852|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Macrhybopsis sp. B AAE-2017]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 564.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTlDPLLLSVLGLT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1214146029 321 QNSLPLALSTVMALGLLPITPSMLMLV 347
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALL 346
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 564.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTlDPLLLSVLGLT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1214146029 321 QNSLPLALSTVMALGLLPITPSMLMLV 347
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALL 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-300 1.38e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.38e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLttLLFSLgLGTTLTFASSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILF--------AG 74
Cdd:COG1007   105 YAL--LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  75 TTN----AWTTGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLD 150
Cdd:COG1007   182 SLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 151 P-------LLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVL----QYAPQLTLLALMTYVLMTTTAFLTL 219
Cdd:COG1007   262 PglaadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 220 -----KFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYL 294
Cdd:COG1007   342 lllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....*.
gi 1214146029 295 RLCYTM 300
Cdd:COG1007   422 RVVKAM 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.72e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.22  E-value: 5.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  23 SSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMTNMSDPAATT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  97 ------MILAALALKIGLAPMHFWMPEVLQGLDLLTGLIL-STWQKLAPMALI-----IQTAQTLDPLLLSVLGLTSTFV 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 165 GGWGGLNQTQLRKILAYSSIAHMGWMIIVL----QYAPQLTLLALMTYVLMTTTAFL-----TLKFSSATKINTLATIWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1214146029 236 KSPVLTATTALVLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-345 5.56e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.39  E-value: 5.56e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLgLGTTLTFASSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILF--------AGTTN-- 77
Cdd:TIGR01770 108 LLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfe 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  78 ----AWTTGGWDMTNMSdpAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQ-------TA 146
Cdd:TIGR01770 187 dlllFLSNGMLNISLLL--LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRlflyilfGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 147 QTLDPLLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVL----QYAPQLTLLALMTYVLMTTTAFLTLKFS 222
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 223 SATK------INTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRL 296
Cdd:TIGR01770 345 RSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1214146029 297 CYTMTLtispNTSTSTAPWRTQTTQNSLPLALSTvMALGLLPITPSMLM 345
Cdd:TIGR01770 425 VKVMYF----DKPERRIPSNPQSKAQSLLLSISA-LFILFLGLFPSLIL 468
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 564.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTlDPLLLSVLGLT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1214146029 321 QNSLPLALSTVMALGLLPITPSMLMLV 347
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 2.30e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 429.34  E-value: 2.30e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLGLT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRtQTT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR-FKN 319

                         330       340
                  ....*....|....*....|....*.
gi 1214146029 321 QNSLPLALSTVMALGLLPITPSMLML 346
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-347 2.62e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 376.09  E-value: 2.62e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLGLT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*..
gi 1214146029 321 QNSLpLALSTVMALGLLPITPSMLMLV 347
Cdd:MTH00112  321 KNTL-TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.27e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 360.70  E-value: 3.27e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLGLT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*.
gi 1214146029 321 QNSLPLALSTVMALGLLPITPSMLML 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.47e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 333.47  E-value: 1.47e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLGLT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1214146029 321 QNsLPLALSTVMALGLLPITPSMLML 346
Cdd:MTH00200  321 SN-LLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-344 1.09e-92

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 280.28  E-value: 1.09e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLGLT 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWRTQTT 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1214146029 321 QNSLPLALS-----TVMALGLLPITPSML 344
Cdd:MTH00041  321 ITVYGVILSilssiSILGLLLIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-348 8.44e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 192.73  E-value: 8.44e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   1 MNPYVLTtLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT 80
Cdd:MTH00160    3 MNSSKLL-FLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSdpaattMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLdplLLSVLGLT 160
Cdd:MTH00160   82 LMLFNNISSM------LINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN---FIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 241 TATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTStstapWRTQTT 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK-----WNLKKK 307

                         330       340
                  ....*....|....*....|....*...
gi 1214146029 321 QNSLPLALSTVMALGLLPITPSMLMLVI 348
Cdd:MTH00160  308 KNKFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-344 2.81e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.05  E-value: 2.81e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  10 LFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMTnm 89
Cdd:MTH00144   10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM-- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  90 sdpaatTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPL-LLSVLGLTSTFVGGWG 168
Cdd:MTH00144   88 ------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALVGSIG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 169 GLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTtaFLTLKFSSATKINTLATIWSKSPVLTATTALVL 248
Cdd:MTH00144  162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSG--FLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 249 LSLGG-LPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTStapwrtqtTQNSLPLA 327
Cdd:MTH00144  240 LLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSN--------SSKVLNSS 311

                         330
                  ....*....|....*..
gi 1214146029 328 LSTVMALGLLPITPSML 344
Cdd:MTH00144  312 IISLNLLGGLLFLLLYL 328
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-338 2.06e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.02  E-value: 2.06e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  12 SLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAgttnawTTGGWDMTNMSD 91
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  92 PAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLGLTSTFVGGWGGLN 171
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 172 QTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVLTATTALVLLSL 251
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 252 GGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTSTAPWrtqTTQNSLPLALSTV 331
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPY---EPKTKILISMCTL 324


                  ....*..
gi 1214146029 332 MaLGLLP 338
Cdd:MTH00011  325 S-LGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-299 1.44e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 155.60  E-value: 1.44e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMTN 88
Cdd:MTH00197    3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLSV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  89 MsdpaattMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPmaLIIQTAQTLDPLLLSVLGLTSTFVGGWG 168
Cdd:MTH00197   83 V-------LVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 169 GLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSSATKINTLATIWSKSPVLTATTALVL 248
Cdd:MTH00197  154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1214146029 249 LSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYT 299
Cdd:MTH00197  234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-300 1.38e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.38e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLttLLFSLgLGTTLTFASSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILF--------AG 74
Cdd:COG1007   105 YAL--LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  75 TTN----AWTTGGWDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLD 150
Cdd:COG1007   182 SLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 151 P-------LLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVL----QYAPQLTLLALMTYVLMTTTAFLTL 219
Cdd:COG1007   262 PglaadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 220 -----KFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYL 294
Cdd:COG1007   342 lllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....*.
gi 1214146029 295 RLCYTM 300
Cdd:COG1007   422 RVVKAM 427
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 7.06e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.66  E-value: 7.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  15 LGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHP-RAVEATTKYFLTQATAAAVILFAGTTNAWTTGG---------- 83
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGlhlsyinlvl 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  84 ---WDMTNMSDPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLlsVLGLT 160
Cdd:MTH00196   84 nsgQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILL--IGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAP----QLTLLALMTYVLMTTTAFLTLKFSSATK--INTLATIW 234
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1214146029 235 SKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRL 296
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-338 1.69e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.22  E-value: 1.69e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLttLLFSLgLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQH-HHPRAVEATTKYFLTQATAAAVILF--------AG 74
Cdd:PRK05777  106 YLL--VLFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTG 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  75 TTNAWTTGGWDMTNMSDP----AATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLD 150
Cdd:PRK05777  183 SLSFAGIAKALADGSGNSllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAF 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 151 P-------LLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALM----TYVLMTTTAF--- 216
Cdd:PRK05777  263 GglsedwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLfyllAYLFMTLGAFgvi 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 217 --LTLKFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYL 294
Cdd:PRK05777  343 slLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1214146029 295 RLCYTMTLtiSPNTSTSTAPWRTQTTQNSLPLALSTVMALGLLP 338
Cdd:PRK05777  423 RVIKLMYF--DEPPRDAPVNWPLSAGGAVLSVSALLVLVLGIFP 464
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 9.90e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 104.33  E-value: 9.90e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  13 LGLGTTLTFASSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILF--------AGTT-----NA 78
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFgcallyglTGETsiqgiNS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  79 WTTGGWdmtnmsdpaATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDPLLLSVLg 158
Cdd:MTH00199  186 ILTGDV---------GKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAV- 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 159 lTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAP----QLTLLALMTYVLMTTTAF---LTLKFSSATkINTLA 231
Cdd:MTH00199  256 -LSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVS 333

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1214146029 232 TIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRL 296
Cdd:MTH00199  334 GLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-300 2.23e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 94.44  E-value: 2.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   8 TLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMT 87
Cdd:COG0651   111 PLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  88 NMSDPAAT----------TMILAALALKIGLAPMHFWMPE-----------VLQGLDLLTGL--ILSTWQKLAPMALIIQ 144
Cdd:COG0651   191 DLAARLAEldpglllaafALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALF 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 145 TAqtldpLLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYV----LMTTTAFLT-- 218
Cdd:COG0651   271 LG-----TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAag 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 219 --LKFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRL 296
Cdd:COG0651   346 aiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425


                  ....
gi 1214146029 297 CYTM 300
Cdd:COG0651   426 FGRA 429
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.72e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.22  E-value: 5.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  23 SSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMTNMSDPAATT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  97 ------MILAALALKIGLAPMHFWMPEVLQGLDLLTGLIL-STWQKLAPMALI-----IQTAQTLDPLLLSVLGLTSTFV 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 165 GGWGGLNQTQLRKILAYSSIAHMGWMIIVL----QYAPQLTLLALMTYVLMTTTAFL-----TLKFSSATKINTLATIWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1214146029 236 KSPVLTATTALVLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-345 5.56e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.39  E-value: 5.56e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLgLGTTLTFASSNWLLAWMGLEINTLAIVPLMA-QHHHPRAVEATTKYFLTQATAAAVILF--------AGTTN-- 77
Cdd:TIGR01770 108 LLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfe 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  78 ----AWTTGGWDMTNMSdpAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQ-------TA 146
Cdd:TIGR01770 187 dlllFLSNGMLNISLLL--LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRlflyilfGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 147 QTLDPLLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVL----QYAPQLTLLALMTYVLMTTTAFLTLKFS 222
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 223 SATK------INTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRL 296
Cdd:TIGR01770 345 RSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1214146029 297 CYTMTLtispNTSTSTAPWRTQTTQNSLPLALSTvMALGLLPITPSMLM 345
Cdd:TIGR01770 425 VKVMYF----DKPERRIPSNPQSKAQSLLLSISA-LFILFLGLFPSLIL 468
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-300 2.32e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.21  E-value: 2.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAV---------EATTKYFLTQATAAAVILFAGTTNAW 79
Cdd:MTH00198  193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  80 TTGGWDM--TNMSDPAATT------------MILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQT 145
Cdd:MTH00198  273 FTGNEGMlgTILSATLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 146 AQTlDPLLLSVlGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMtttaFLTLKFSSAT 225
Cdd:MTH00198  353 VIT-SKLLLSV-AIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVT----YLVSALASFT 426

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 226 KINTLA----------------------------TIWSKS-PVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLP 276
Cdd:MTH00198  427 VICTLEefgtrtptsrqrdgsfgnynlvrrlvdlTILSRGqPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFS 506

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1214146029 277 LTATVMALAAL-------ISLYFYLRLCYTM 300
Cdd:MTH00198  507 SSLSIYYLVALfaiictcISAFYYIRIVATI 537
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-300 2.65e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.38  E-value: 2.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  50 PRAVEATTKYFLTQATAAAVILF---------AGTTNAWTTGGWDMTNMSDPAATTMI--LAALALKIGLAPMHFWMPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPSLGLALALVfvIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 119 LQGLDLLTGLILSTWQKLAPMALIIQTAQTLDP-------LLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMI 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 192 IVLQYAPQ----LTLLALMTYVLMTTTAFL-TLKFSSAT---KINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPK 263
Cdd:PRK02504  317 IGLVAGTEagyaSMVFYLLAYLFMNLGAFAcVILFSLRTgtdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1214146029 264 WLILQELAKQGLPLTATVMALAALISLYFYLRLCYTM 300
Cdd:PRK02504  397 IYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIKMM 433
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 3.56e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.95  E-value: 3.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  51 RAVEATTKYFLTQATAAAVILFA---------GTTNAWT-TGGWDMTNMSDPAAT----TMILAALALKIGLAPMHFWMP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGfswlyglsgGEIELQEiVNGLINTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 117 EVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLDP-------LLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 190 MIIVL-------QYAPQLTLLalMTYVLMTTTAF--LTLkFSSAT---KINTLATIWSKSPVLTATTALVLLSLGGLPPL 257
Cdd:CHL00049  319 VIIGIivgdsndGYASMITYM--LFYIFMNLGTFacIVL-FGLRTgtdNIRDYAGLYTKDPFLALSLALCLLSLGGIPPL 395

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1214146029 258 TGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRL 296
Cdd:CHL00049  396 AGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-300 9.09e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 65.76  E-value: 9.09e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVplMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGG 83
Cdd:PRK12667  116 YTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLV--AYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGT 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  84 WDMTNMS----------------DPAATTMILAALAL-----KIGLAPMHFWMPEV-----------LQGLDLLTG---- 127
Cdd:PRK12667  194 LNMADLSakirglsfpltgglagNPPLALGVALALALwaftiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayai 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 128 -----LILSTWQKLAPMALIIQtaqtldpLLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTL 202
Cdd:PRK12667  274 irflyTIFGISPSLIDFRAALS-------PILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGL 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 203 LALMTYVLMTTTA----FLT----LKFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQG 274
Cdd:PRK12667  347 AAALFHIINHAIAksllFLAsgvfIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESG 426

                         330       340
                  ....*....|....*....|....*.
gi 1214146029 275 LPLTATVMALAALISLYFYLRLCYTM 300
Cdd:PRK12667  427 FYLPALVLLIASAISLVGYFRAWYSL 452
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 9.13e-12

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 59.19  E-value: 9.13e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1214146029 291 YFYLRLCYTMTLTISPNTSTSTAPWRTQTTQNSLPLALSTVMALGLLPITP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-336 5.46e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 63.36  E-value: 5.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  33 LEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFA--------GTTNAWTTGGWDMTNMSDPAATTMILAALAL 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllygvtGTLNMADLAGALAENPTVVTAFGFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 105 KIGLAPMHFWMPEVLQGL-DLLTGLILSTWQKLAPMALIIQTAQTLDP---------LLLSVLGLTSTFVGGWGGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 175 LRKILAYSSIAHMGWMIIVLQYAPQLTLLA----LMTYVLMTTTAFLTL----KFSSATKINTLATIWSKSPVLTATTAL 246
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAgllhLLHHALMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 247 VLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTLTISPNTSTST---APWRTqttqnS 323
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPkqeAPLGM-----L 449

                         330
                  ....*....|...
gi 1214146029 324 LPLALSTVMALGL 336
Cdd:PRK08375  450 APSLALALLSLLL 462
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 4-298 8.34e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.87  E-value: 8.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLTTLLFSLGLGTtltFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFA----GTTNAW 79
Cdd:TIGR01972 109 YALLLLLEAGVIGV---FLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  80 TTGGWDMTNMSDPAATTMIL-----AALALKIGLAPMHFWMPEV-----LQGLDLLTGLILstwqKLAPMALII------ 143
Cdd:TIGR01972 186 TFDLLELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLRfnlplf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 144 -QTAQTLDPLLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLM--TTTAFLTL- 219
Cdd:TIGR01972 262 pDASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMIShgLITAALFLl 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 220 -----KFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLT---ATVMALAALISLY 291
Cdd:TIGR01972 341 vgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAflaALGIVLAAAYMLT 420


                  ....*..
gi 1214146029 292 FYLRLCY 298
Cdd:TIGR01972 421 LYKRVFF 427
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-295 1.99e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 1.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  17 TTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATA------AAVILFAGTTNAWTTGGWDMTNMS 90
Cdd:PRK08676  115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELA 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  91 DPA----------ATTMILAALALKIGLAPMHFWMPEVLQGLD-----LLTGLILST--WQKLAPMALIIQT--AQTLDP 151
Cdd:PRK08676  195 AHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsaLLSGTVLNIgiYGILRLSALLRQSgaAEQFSN 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 152 LLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLMTTTAFLTLKFSS-------- 223
Cdd:PRK08676  275 VLI-GLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAgilhrqyr 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1214146029 224 ATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVM---ALAALISLYFYLR 295
Cdd:PRK08676  354 SDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLlllLLAASSFAIFLLK 428
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 2.10e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 52.39  E-value: 2.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  49 HPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGW-----DMTNMSDPAATTMIL-----AALALKIGLAPMHFWMPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAQLLLflaffIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 119 LQ-----GLDLLTGLILstwqKLAPMALI-------IQTAQTLDPLLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:COG1008   236 HVeaptaGSVLLAGVLL----KMGGYGLLrfalplfPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310


                  ....*.
gi 1214146029 187 MGWMII 192
Cdd:COG1008   311 MGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-192 4.67e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.25  E-value: 4.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  33 LEINTLAIVPLMAQHHH-PRAVEATTKYFLTQATAAAVILFA-----GTTNAWTTGGWDMTNMSDPAATTMI-----LAA 101
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGiallyGQYGTLNMAYLAVKMSENPTVVAKIalalfIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 102 LALKIGLAPMHFWMP----EVLQGLDLLtgLILSTWQKLAPMALIIQT--AQTLDPL----LLSVLGLTSTFVGGWGGLN 171
Cdd:PRK08376  230 LAMKSGAVPVHMWLPdaypAAPSSISAM--LLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVV 307

                         170       180
                  ....*....|....*....|.
gi 1214146029 172 QTQLRKILAYSSIAHMGWMII 192
Cdd:PRK08376  308 QKDVKRLLAYHSVSQIGYMLL 328
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 19-190 1.44e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.93  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  19 LTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFL------TQATAAAVILFAGTTNAWTTGGWDM--TNMS 90
Cdd:PRK06458  123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEMAIlwTELL 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  91 DPAA----TTMILA-ALAL-----KIGLAPMHFWMPE-----------VLQGLDLLTGL-ILSTWQKLAPMALIIQTAQT 148
Cdd:PRK06458  203 KHASlldpTLMKLAfVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIGSDFPGR 282

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1214146029 149 LdpllLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06458  283 L----LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-287 1.39e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.48  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYfLTQATAAAVILFAGTTNA-WTTG 82
Cdd:PRK07234   94 RFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRY-LFYSNVAMLFYLIGAVLVyQANG 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  83 GWDMTNMS--DPAATTMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQ------KLAPMALIIQTaqtLDPLLl 154
Cdd:PRK07234  173 TFAFSGLAtaDPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVvkagvfPLVRCALDVPG---LDLIV- 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 155 SVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIvlqyAPQLTLLALMTYVLMTTTAFL---TLKFSSATK-INTL 230
Cdd:PRK07234  249 RIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA----APLVGGLYALAHGLVKSTLFLcagALPSRNFTElISQM 324

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1214146029 231 ATIWSKSPVLTATTALVLLSLGGlppltGFMPKWLILqelaKQGLPLTATVMALAAL 287
Cdd:PRK07234  325 LGIGKWIPLTMASFSIAGFPLLA-----GFVSKVLTL----KNLLPWQAIALNLAAV 372
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
9-204 2.20e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.23  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWD--- 85
Cdd:PRK06473  112 LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSfdy 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  86 --MTNMSDPAATTM-----ILAALALKIGLAPMHFWMPE-----------VLQG--LDLLT--------GLILSTWQKLA 137
Cdd:PRK06473  192 epLRSHTLPLSTQLlllapILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLA 271

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1214146029 138 PMaliiqtaqtldpllLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLA 204
Cdd:PRK06473  272 PW--------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 153-302 3.77e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 45.37  E-value: 3.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 153 LLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYVLmTTTAFLTLKFSSA-------- 224
Cdd:PRK08668  274 ILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVF-NHALFKGLFFLIFaaviyrtg 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 225 -TKINTLATIWSKSPVlTATTALVLLSLGGLPPLT-GFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTMTL 302
Cdd:PRK08668  353 tTKISEMGGLIEKMPF-TFAMYLVAIISLAGIPPMsGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVFL 431
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-288 5.55e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.91  E-value: 5.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  80 TTGGWDMTNM-SDPAATTMILAALAL-------KIGLAPMHFWMPE-----------------VLQGLDLLTglilstwq 134
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYLVA-------- 254

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 135 KLAPMALIIQTAQtldPLLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLA----LMTYVL 210
Cdd:PRK12644  255 RLAPGFADVPVWR---PTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAglamLLAHAL 330

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 211 MTTTAFLT---LKFSSATK-INTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAA 286
Cdd:PRK12644  331 FKAALFLVvgiIDHSTGTRdIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAG 410


                  ..
gi 1214146029 287 LI 288
Cdd:PRK12644  411 IV 412
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 9-300 7.12e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 44.37  E-value: 7.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMTN 88
Cdd:PRK08377  113 LFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAH 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  89 MSDPAAT----------TMILAALALKIGLAPMHFWMPEVLQGLDLLTGLILSTW---QKLAPMALIIQTAQTLDPL--- 152
Cdd:PRK08377  193 IAQLAGTidptvaqvglALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFvvkAGLYAMARILYLMQNANGWssv 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 153 --LLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLA----LMTYVLMTTTAFLTLKF----S 222
Cdd:PRK08377  273 lkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAgvfhMINHAIVKALLFLAVGYvgitL 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1214146029 223 SATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISLYFYLRLCYTM 300
Cdd:PRK08377  353 GGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTM 430
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
3-203 9.11e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.93  E-value: 9.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   3 PYVLTTLLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTG 82
Cdd:PRK07363  106 PRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLGIVWLSG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  83 G--WDMTNMSDPAAT--------TMILAALALKIGLAPMHFWMP----EVLQGLDLLTGLILStwqKLAPMALI------ 142
Cdd:PRK07363  186 StsFDYDAISTQNLSlntqlillTGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLA---KLGTYGLLrfglql 262

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1214146029 143 -IQTAQTLDPLLlSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLL 203
Cdd:PRK07363  263 fPQTWSLVAPGL-AIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 4-192 1.17e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   4 YVLTTLLFSLGLGTtltFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGG 83
Cdd:PRK12561   90 YFLMLVLYSAQIGV---FLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDT 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  84 --WDMTN--MSDPAATTMILAALALKIGLA------PMHFWMPEV-----LQGLDLLTGLILstwqKLAPMALIIQTAQT 148
Cdd:PRK12561  167 ftFDLAElgAKSYPLALELLLYAGFLIAFGvklpifPLHTWLPDAhgeasAPVSMILAGVLL----KMGGYALIRFNVQM 242

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1214146029 149 LD-------PLLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMII 192
Cdd:PRK12561  243 LPdahvyfaPALA-ILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-194 1.38e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 43.76  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  98 ILAALALKIGLAPMHFWMPEV-----LQGLDLLTGLILstwqKLAPMALIIQT-------AQTLDPLLLSvLGLTSTFVG 165
Cdd:MTH00226  236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSwpilplgAQNLAPAVIA-MGIVGIVYG 310

                          90       100
                  ....*....|....*....|....*....
gi 1214146029 166 GWGGLNQTQLRKILAYSSIAHMGWMIIVL 194
Cdd:MTH00226  311 SFATCRQIDVKRLVAYSSVAHMGLVSITL 339
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-194 1.03e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 111 MHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQT-----AQTLDPLLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIA 185
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323


                  ....*....
gi 1214146029 186 HMGWMIIVL 194
Cdd:MTH00032  324 QLGYMVLII 332
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.50e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.19  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  50 PRAVEATTKYFL-TQATAA---AVILFAGTTNAWTTGGWDM-----TNMSDPAATTMILA---ALALKIGLAPMHFWMPE 117
Cdd:PRK05846  157 KNRIYAATKFFLyTLLGSLlmlVAIIYLVVVYYNATGTFDIadllnLPLPPGVQYWLFLAffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 118 VLQ-----GLDLLTGLILstwqKLAPMALI-------IQTAQTLDPLLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIA 185
Cdd:PRK05846  237 AHVqaptaGSVLLAGILL----KMGAYGLLrfslplfPDASHEFAPIII-TLGVIAIIYGALVALAQTDIKKLIAYSSIS 311


                  ....*..
gi 1214146029 186 HMGWMII 192
Cdd:PRK05846  312 HMGFVTL 318
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 9-192 1.65e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.08  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   9 LLFSLGLGTTLTFASSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTG--GWDM 86
Cdd:PRK02546  120 LMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYGDtpTFDM 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  87 TNMSDPAATTM--------ILAALALKIGLAPMHFWMPEVLQGLD-----LLTGLILstwqKLAPMALIIQTAQTLD--- 150
Cdd:PRK02546  200 TALAAKDFGLGfqllcyagLLIAYGVKLPIVPLHTWLPDAHGEATapvhmLLAGILL----KMGGYALLRMNAGMLPdah 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1214146029 151 ----PLLLsVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMII 192
Cdd:PRK02546  276 aqfaPLLI-VLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLI 320
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-290 2.04e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.95  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  97 MILAALALKIGLAPMHFWMPE-----------VLQGLdlLTglilstwqKLAPMALI-----IQTAQTLDPLLLsVLGLT 160
Cdd:PRK12665  214 VLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGL--LT--------KVGVYAIIrthtlLFPGGGLDTLLM-VVALL 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 161 STFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYV----LMTTTAFLTL----KFSSATKINTLAT 232
Cdd:PRK12665  283 TMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVglieRQAGSSSLRRLGG 362

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1214146029 233 IWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALISL 290
Cdd:PRK12665  363 LAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVAGGVVTSL 420
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 101-188 2.62e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 39.65  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 101 ALALKIGLAPMHFWMPEV-----LQGLDLLTGLILS---------TWqKLAPMAliiqtAQTLDPLLLSvLGLTSTFVGG 166
Cdd:MTH00217  215 SLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLLKlggygfirfSW-PLLPEA-----SEYFSPLIQT-LSLLAIIYGS 287

                          90       100
                  ....*....|....*....|..
gi 1214146029 167 WGGLNQTQLRKILAYSSIAHMG 188
Cdd:MTH00217  288 LTTCRQVDLKRIIAYSSVAHMG 309
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-227 2.66e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.68  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 111 MHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQTLD--PLLL---SVLGLTSTFVGGWGGLNQTQLRKILAYSSIA 185
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEqaPLALiivTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1214146029 186 HMGWMIIvlqyAPQLTLLALMTYVLMTTTAFLTLKFSSATKI 227
Cdd:MTH00020  309 QLGYMVV----ACGLSHYSISLFHLMNHAFFKALLFLSAGSV 346
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 4.34e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 4.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  33 LEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWTTGGWDMTNMSD-----------PAATTMILAA 101
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLiiqdlptnraiQIGVLFIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 102 LALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPMALIIQTAQT-------LDPLLLS----VLGLTSTFVGGWGGL 170
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanfvFTTLPFNnvfmILAALAIVFGSVLAI 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 171 NQTQLRKILAYSSIAHMGWMIIVLQYAPQLTLLALMTYV---------LMTTTAFLTLKFSSaTKINTLATIWSKSPVLT 241
Cdd:PRK12662  299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsivksaLFMVSGSISYHFGT-TKLEDCLNLWKSMPKIT 377

                         250       260
                  ....*....|....*....|....*.
gi 1214146029 242 ATTALVLLSLGGLPPLTGFMPKWLIL 267
Cdd:PRK12662  378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 152-194 4.75e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.59  E-value: 4.75e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1214146029 152 LLLSVLGLTSTFVGGWGGLNQTQLRKILAYSSIAHMGWMIIVL 194
Cdd:COG1009   276 TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-315 7.04e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.26  E-value: 7.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029   2 NPYVLTTLLFSLGLGTTLTFaSSNWLLAWMGLEINTLAIVPLMAQHHHPRAVEATTKYFLTQATAAAVILFAGTTNAWT- 80
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIAL-SSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTk 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029  81 TGGWDMTNMSDPAATTMILAALALKIGLA-----PMHFWMPE-----------------VLQGLDLLTGLILSTWqKLAP 138
Cdd:PRK06589  194 TGNLDFVSGGLFSKNQSIILLLMFIYGIAktaifPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSY 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 139 MALIIQTAQTLdPLLLSVLGLTSTFVGgwggLNQTQLRKILAYSSIAHMGWMI----IVLQYAPQLTLLALMTYVLMTTT 214
Cdd:PRK06589  273 LQRIFAEFNWL-IFIPIVSIFYSSLKA----LKTDNIKKILAYSTISQLSLALlsafILTPKALGAAILHLVSHSFAKIC 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214146029 215 AFLTL----KFSSATKINTLATIWSKSPVLTATTALVLLSLGGLPPLTGFMPKWLILQELAKQGLPLTATVMALAALIS- 289
Cdd:PRK06589  348 LFYSMgsiySLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASs 427

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1214146029 290 ----LYFYLRLCYTMTLTISPNTS-TSTAPW 315
Cdd:PRK06589  428 ilsaLYLLKILSSIYKPSLSENSFiTKSLPY 458
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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