|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-253 |
3.59e-144 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 407.63 E-value: 3.59e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00156 26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFL 265
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00156 266 FAYAILRSIPNKL 278
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-251 |
1.65e-90 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 272.43 E-value: 1.65e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNF--KMTW 78
Cdd:COG1290 45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNW 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIIIMF 157
Cdd:COG1290 125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 158 TMIHLFFLHITGSNNPLGI----NSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPylLNDHNNFIMANPMITPNHI 233
Cdd:COG1290 205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHI 282
|
250
....*....|....*...
gi 1233822680 234 QPEWYFLFSYSILRAIPN 251
Cdd:COG1290 283 QPDWYFLPFYGILRAIPG 300
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-171 |
8.66e-65 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 200.29 E-value: 8.66e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFN--FKMTW 78
Cdd:cd00284 28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFT 158
Cdd:cd00284 108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187
|
170
....*....|...
gi 1233822680 159 MIHLFFLHITGSN 171
Cdd:cd00284 188 ILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-169 |
1.33e-59 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 186.82 E-value: 1.33e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFN--FKMTW 78
Cdd:pfam00033 19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFT 158
Cdd:pfam00033 99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178
|
170
....*....|.
gi 1233822680 159 MIHLFFLHITG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
224-253 |
2.50e-04 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 40.55 E-value: 2.50e-04
10 20 30
....*....|....*....|....*....|
gi 1233822680 224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:TIGR01156 66 ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-253 |
3.59e-144 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 407.63 E-value: 3.59e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00156 26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFL 265
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00156 266 FAYAILRSIPNKL 278
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-253 |
3.58e-137 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 390.80 E-value: 3.58e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00119 37 LLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00119 117 GVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLI 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00119 197 HLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFL 276
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00119 277 FAYAILRSIPNKL 289
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-253 |
3.86e-132 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 377.84 E-value: 3.86e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00131 36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00131 196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFL 275
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00131 276 FAYAILRSIPNKL 288
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-253 |
3.11e-128 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 368.08 E-value: 3.11e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00145 37 LLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00145 117 GVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00145 197 HLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFL 276
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00145 277 FAYAILRSIPNKL 289
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-253 |
5.77e-128 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 366.93 E-value: 5.77e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00191 33 LLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00191 113 GVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00191 193 HLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFL 272
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00191 273 FAYAILRSIPNKL 285
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-253 |
1.10e-126 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 363.96 E-value: 1.10e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00100 36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00100 116 GIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMV 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00100 196 HLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFL 275
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00100 276 FAYAILRSIPNKL 288
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-253 |
5.35e-124 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 357.45 E-value: 5.35e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00074 37 LLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00074 117 GVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASII 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00074 197 HLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFL 276
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00074 277 FAYAILRSIPNKL 289
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-253 |
1.05e-119 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 346.31 E-value: 1.05e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00034 36 LLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00034 116 GVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSII 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00034 196 HLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFL 275
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00034 276 FAYAILRSIPNKL 288
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-253 |
1.09e-119 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 346.28 E-value: 1.09e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00016 37 LLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00016 117 GVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMI 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00016 197 HLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFL 276
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00016 277 WAYAILRSIPNKL 289
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-253 |
1.12e-103 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 305.69 E-value: 1.12e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00224 37 LLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00224 117 GVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATIL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00224 197 HIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFL 276
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00224 277 WMYAILRSIPNKL 289
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-253 |
1.19e-103 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 305.48 E-value: 1.19e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00053 37 LLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00053 117 GVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00053 197 HLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFL 276
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00053 277 FAYAILRSIPNKL 289
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-253 |
1.74e-103 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 305.09 E-value: 1.74e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00022 35 LLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00022 115 GVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIV 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00022 195 HLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFL 274
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00022 275 FAYAILRSIPNKL 287
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-251 |
1.65e-90 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 272.43 E-value: 1.65e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNF--KMTW 78
Cdd:COG1290 45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNW 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIIIMF 157
Cdd:COG1290 125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 158 TMIHLFFLHITGSNNPLGI----NSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPylLNDHNNFIMANPMITPNHI 233
Cdd:COG1290 205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHI 282
|
250
....*....|....*...
gi 1233822680 234 QPEWYFLFSYSILRAIPN 251
Cdd:COG1290 283 QPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-253 |
8.46e-89 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 266.81 E-value: 8.46e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00086 25 MLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWIS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00086 105 GLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMwMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00086 185 HLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFL 263
|
250
....*....|...
gi 1233822680 241 FSYSILRAIPNKL 253
Cdd:MTH00086 264 FAYAILRAIPNKV 276
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-253 |
1.52e-84 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 257.17 E-value: 1.52e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLI 80
Cdd:MTH00033 33 LLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 81 GVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMI 160
Cdd:MTH00033 113 GVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 161 HLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTL--IFPYLLNDHNNFIMANPMITPNHIQPEWY 238
Cdd:MTH00033 193 HLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWY 272
|
250
....*....|....*
gi 1233822680 239 FLFSYSILRAIPNKL 253
Cdd:MTH00033 273 FLFAYAILRSIPNKL 287
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-171 |
8.66e-65 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 200.29 E-value: 8.66e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFN--FKMTW 78
Cdd:cd00284 28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFT 158
Cdd:cd00284 108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187
|
170
....*....|...
gi 1233822680 159 MIHLFFLHITGSN 171
Cdd:cd00284 188 ILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
9-253 |
4.03e-64 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 203.68 E-value: 4.03e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 9 QIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFNFKMTWLIGVMLLLLT 88
Cdd:MTH00046 35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 89 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFTMIHLFFLHIT 168
Cdd:MTH00046 115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 169 GSNNPLGINSNF-DKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYSILR 247
Cdd:MTH00046 195 GSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274
|
....*.
gi 1233822680 248 AIPNKL 253
Cdd:MTH00046 275 SINSKI 280
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-169 |
1.33e-59 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 186.82 E-value: 1.33e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFN--FKMTW 78
Cdd:pfam00033 19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIIIMFT 158
Cdd:pfam00033 99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178
|
170
....*....|.
gi 1233822680 159 MIHLFFLHITG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
53-215 |
7.76e-37 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 127.74 E-value: 7.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 53 SMFFIMIYIHISRGIYMNSFNF--KMTWLIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIW 130
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 131 GGFSINNATLTRFFSIHF-ILPFIIIMFTMIHLFFLHITGSNNPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTL 209
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*.
gi 1233822680 210 IFPYLL 215
Cdd:pfam13631 161 INPIWL 166
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-174 |
2.96e-36 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 127.91 E-value: 2.96e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 1 LLMICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRGIYMNSFN--FKMTW 78
Cdd:PRK03735 47 LTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRELNW 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIIIMF 157
Cdd:PRK03735 127 VVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVL 206
|
170
....*....|....*..
gi 1233822680 158 TMIHLFFLHITGSNNPL 174
Cdd:PRK03735 207 MLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-174 |
6.03e-34 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 121.75 E-value: 6.03e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 3 MICLMNQIFTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMIYIHISRgIYMNSfNFK----MTW 78
Cdd:CHL00070 41 LTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VYLTG-GFKkpreLTW 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 79 LIGVMLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIIIMF 157
Cdd:CHL00070 119 VTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVF 198
|
170
....*....|....*..
gi 1233822680 158 TMIHLFFLHITGSNNPL 174
Cdd:CHL00070 199 MLMHFLMIRKQGISGPL 215
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
172-253 |
2.10e-21 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 86.93 E-value: 2.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233822680 172 NPLGINSNFDKILFSPYFIIKDLIGLILFMWMFFILTLIFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYSILRAIPN 251
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 1233822680 252 KL 253
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
223-253 |
8.40e-12 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 60.18 E-value: 8.40e-12
10 20 30
....*....|....*....|....*....|.
gi 1233822680 223 MANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKL 31
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
224-253 |
3.15e-05 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 43.07 E-value: 3.15e-05
10 20 30
....*....|....*....|....*....|
gi 1233822680 224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:CHL00058 66 ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
224-253 |
3.29e-05 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 42.86 E-value: 3.29e-05
10 20 30
....*....|....*....|....*....|
gi 1233822680 224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:COG5679 67 ADPFATPLEILPEWYLYPVFQILRVVPNKL 96
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
224-253 |
2.50e-04 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 40.55 E-value: 2.50e-04
10 20 30
....*....|....*....|....*....|
gi 1233822680 224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:TIGR01156 66 ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
|