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Conserved domains on  [gi|1236769352|gb|ASV49800|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Alophoixus ochraceus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.63e-174

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 486.25  E-value: 8.63e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1236769352 321 IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.63e-174

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 486.25  E-value: 8.63e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1236769352 321 IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 1.08e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.77  E-value: 1.08e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  15 LGTFITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLF--------SSTTN----AWHT 81
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  82 GQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMVLLLMTA-HSLNP---TLL 154
Cdd:COG1007   193 AAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IISYSPK-LTLLNFYL--YTMMTAAVFLTL-----NSTKVL 225
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlllsrKGGEAE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236769352 226 KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:COG1007   353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 4.02e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 111.19  E-value: 4.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  15 LGTFITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPA 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  94 SCLILT------------SAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMVLLLMTA----HSLNPTLL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FYL--YTMMTAAVFLTLNSTKVLK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236769352 227 --LSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.05e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  23 SNHWAMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  91 HPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK------FPPMVLLLMTAHSLNPTLLTSMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIIS----YSPKLTLLNFYLYTMMTAAVFLTLNS-----TKVLKLSVLMTTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1236769352 236 KAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.63e-174

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 486.25  E-value: 8.63e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1236769352 321 IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 3.84e-140

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 401.11  E-value: 3.84e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSlNPTLLTSMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1236769352 321 -IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00135  320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 1.26e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 399.68  E-value: 1.26e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1236769352 321 IHCSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 1.99e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 361.09  E-value: 1.99e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1236769352 319 KPIHCSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 7.74e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 298.42  E-value: 7.74e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*
gi 1236769352 321 IHCSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-345 4.55e-89

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 271.03  E-value: 4.55e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1236769352 321 IHCSIAILTVVSSM----LLPISPLLSSL 345
Cdd:MTH00041  321 ITVYGVILSILSSIsilgLLLIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 3.81e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 206.60  E-value: 3.81e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   1 MNPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  81 tgqwdITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTahsLNPTLLTSMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCAtITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....*
gi 1236769352 321 IHcSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00160  312 SL-ILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 2.06e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 170.73  E-value: 2.06e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   7 LIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTnawhtgQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  87 TQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTSMAILSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 167 WMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMTTWSKAPSLNAMLML 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYcATITLPPHTTNhmkqwHTNKPIHCSIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                         330
                  ....*....|....
gi 1236769352 327 ILTVVSSMLLPISP 340
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.64e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 168.53  E-value: 1.64e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   5 AKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  85 DITqlthpascLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNP-TLLTSMAILSTA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 164 LGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLmtTWSKAPSLNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 244 L-MLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATI 302
Cdd:MTH00144  235 SiISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 6.25e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.97  E-value: 6.25e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   8 IFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  88 qLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHslNPTLLTSMAILSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 168 MGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVlMTTWSKAPSLNAM-LML 246
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVfLGL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236769352 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 1.08e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.77  E-value: 1.08e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  15 LGTFITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLF--------SSTTN----AWHT 81
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  82 GQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMVLLLMTA-HSLNP---TLL 154
Cdd:COG1007   193 AAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IISYSPK-LTLLNFYL--YTMMTAAVFLTL-----NSTKVL 225
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlllsrKGGEAE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236769352 226 KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:COG1007   353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 3.08e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 118.21  E-value: 3.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  15 LGTFITISSNHWAMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDI------- 86
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvl 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  87 ------TQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPpmVLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00196   84 nsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG--IFSILVSIGLNVNILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISY----SPKLTLLNFYLYTMMTAAVFLTLNSTKVLK-LSVLMTTWS 235
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnLIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236769352 236 K-APSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRL 296
Cdd:MTH00196  242 RrLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 2.58e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 114.34  E-value: 2.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   8 IFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  87 ----TQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTsmAILST 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 163 ALGGWMGLNQTQTRKILAFSSISHLGW----MAIIISYSPKLTLLNFYLYTMMTAAVF---LTLNSTKVLKLSVLMTTwS 235
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-R 337

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1236769352 236 KAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 4.02e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 111.19  E-value: 4.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  15 LGTFITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPA 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  94 SCLILT------------SAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMVLLLMTA----HSLNPTLL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FYL--YTMMTAAVFLTLNSTKVLK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236769352 227 --LSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 3.43e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 108.37  E-value: 3.43e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   9 FTLSLM--LGTFITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVL-------------- 71
Cdd:PRK05777  106 YLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  72 FSSTTNAWHTGQWDITQLThpASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLL----MTAH 147
Cdd:PRK05777  186 FAGIAKALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvVAFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 148 SLNPT---LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM--AIIISYSPKLTLLNFYL--YTMMTAAVF--LT 218
Cdd:PRK05777  264 GLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFgvIS 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 219 LNSTK---VLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLR 295
Cdd:PRK05777  344 LLRRKggeAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423


                  .
gi 1236769352 296 L 296
Cdd:PRK05777  424 V 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.05e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  23 SNHWAMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  91 HPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK------FPPMVLLLMTAHSLNPTLLTSMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIIS----YSPKLTLLNFYLYTMMTAAVFLTLNS-----TKVLKLSVLMTTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1236769352 236 KAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 1.72e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 98.39  E-value: 1.72e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   3 PQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  74 STTNAWHTGQWDITQLTHPASC--------------LILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFppM 139
Cdd:MTH00198  267 CALYFGFTGNEGMLGTILSATLettnielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 140 VLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLY-------TMMT 212
Cdd:MTH00198  345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALAS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236769352 213 AAVFLTL------------------NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-282 4.22e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.51  E-value: 4.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   9 FTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQ 88
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  89 LTHPAS----------CLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIM---------KFPPMVLLLMTAHSL 149
Cdd:COG0651   192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRVLTLLFGADPALFL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 150 NPTLLTsMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLY----TMMTAAVFLT----LNS 221
Cdd:COG0651   272 GTLLLV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERA 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236769352 222 TKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTI 282
Cdd:COG0651   351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 3.13e-17

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 82.41  E-value: 3.13e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  50 PRSIEAATKYFLTQAAASALVLF-SSTTNAWHTGQwdiTQLTHPASCLI-------------LTSAIAIKLGLAPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 116 PEVLQGSPLTTGLLLSTIMK---FPPMVLLLMTAHSLNPT----LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 189 WMAIII------SYSPKLTLLNFYLYTMMTAAVFLTLNS--TKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGF 260
Cdd:PRK02504  314 FVMIGLvagteaGYASMVFYLLAYLFMNLGAFACVILFSlrTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393


                  ...
gi 1236769352 261 LPK 263
Cdd:PRK02504  394 FGK 396
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 1.57e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 77.35  E-value: 1.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   7 LIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHP-RSIEAATKYFLTQAAASALVL--FSST--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  82 GQWDI------TQLTHPASCLI----LTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNP 151
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 152 T-------LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IIS------YSPKLTLLNFYLYTMMTAAVFL 217
Cdd:CHL00049  274 FssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVgdsndgYASMITYMLFYIFMNLGTFACI 353

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236769352 218 TLNSTK-----VLKLSVLMTtwsKAPSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  354 VLFGLRtgtdnIRDYAGLYT---KDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-279 1.05e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.41  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  49 HPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQW--DITQLTH-----PASCLILTS---AIAIKLGLAPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 119 LQGSPLTTGLLLSTIMK-----------FPpmvLLLMTAHSLNPTLLTsMAILSTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHM 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 188 GWMAI-IISYSPklTLLNFYLYTM-----MTAAVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPL 257
Cdd:COG1008   312 GFVLLgIFALNP--LGLQGAVLQMvshglITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGT 389

                         250       260
                  ....*....|....*....|..
gi 1236769352 258 TGFLPKWLIIQELTKQDMVLAA 279
Cdd:COG1008   390 SGFVGEFLVLLGAFQVNPWLAI 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 4.41e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.66  E-value: 4.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTH--PASCLILT------SAIAI 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 105 KLGLAPFHFWFPEVLQG-SPLTTGLLLSTIMKFPPMVLLLMTAHSLNP---------TLLTSMAILSTALGGWMGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 175 TRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYT-----------MMTAAVFLTLNSTKVLKLSVLMttwSKAPSLNAM 243
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLG---RRMPLTAAA 371

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1236769352 244 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 4.92e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.50  E-value: 4.92e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  33 LEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSttnAWHTGQWDITQLTHPASCL-------------IL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  99 TSAIAIKLGLAPFHFWFPEVLQGSP--LTTGLLLSTIMKFPPMVLLLMTAHSLNPTLLTS------MAILSTALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 171 NQTQTRKILAFSSISHLGWM------AIIISYSPKLT----------LLNFYLYTMMTAAVFLT----LNSTKVLKLSVL 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1236769352 231 MTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-280 6.72e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 6.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   2 NPQAKLIFTLSLMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHpRSIEAATKYFLTQAAASALVLFSSTTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  82 GQWDIT-------QLTHPASCLI----LTSAIAIKLGLAPFHFWFPEVLQGSPLT-TGLLLSTIMKFPPMVLLLMTA--- 146
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSfSAVLSGQLSKLGAYGFLLVLYvlp 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 147 -------------HSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGW----MAIIISYSPKLTLLNFYLYT 209
Cdd:PRK08668  255 gtklfsefgtyrgVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYilvgLGLGTSLGFAGGLFHVFNHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236769352 210 MMTAAVFLTLNS----TKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAM 280
Cdd:PRK08668  335 LFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAF 409
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-279 1.19e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.09  E-value: 1.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  13 LMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSS------------------ 74
Cdd:PRK06458  117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvmgdgemai 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  75 --TTNAWHTGQWDiTQLTHPASCLILTsAIAIKLGLAPFHFWFPEVLQGSP-----LTTGLLLST----IMKFppMVLLL 143
Cdd:PRK06458  197 lwTELLKHASLLD-PTLMKLAFVFLLI-GFGTKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRY--YILID 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 144 MTAHSLNP-TLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMM-----TAAVFL 217
Cdd:PRK06458  273 AAIGSDFPgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltkSAIFFA 352

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236769352 218 TLNSTKVL---KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAA 279
Cdd:PRK06458  353 SGNVLQKYgtrDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIA 417
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.36e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.10  E-value: 1.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  50 PRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQW----DITQLTHPASC-----LILTSAIAIKLGLAPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 119 ---LQGSPLTTGLLLST----IMKFppMVLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMA 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF--NLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 192 IIIsYSPKLTLLNFYLYTMM-----TAAVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLP 262
Cdd:TIGR01972 310 LGI-FSFNELGISGAVFQMIshgliTAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388


                  ....*.
gi 1236769352 263 KWLIIQ 268
Cdd:TIGR01972 389 EFLILL 394
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.18e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.64  E-value: 1.18e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236769352 291 FFYLRLAYCATITLPPHTTNHMKQWHTNKPIHC-SIAILTVVSSMLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 1.30e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 53.11  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  34 EINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQ-----LTHPASCLILTSAIAIKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 109 A------PFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNP--------TLLTSMAILSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 175 TRKILAFSSISHLGWMAIIISYSPKLTL-------LNFYLYTmmtAAVFL----TLNSTKVLKLSVLMTTWSKAPSLNAM 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1236769352 244 LMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.15e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.31  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  96 LILTSAIAiKLGLAPFHFWFPEVLQGSPLTTGLLLSTIM---------KFPPMVlllmtAHSL--NPTLLTsMAILSTAL 164
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPGF-----ADVPvwRPTVLV-LGLATMLL 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPK------LTLLnfYLYTMMTAAVFLTL----NSTKVLKLSVLMTTW 234
Cdd:PRK12644  281 GGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLG 358

                         170       180
                  ....*....|....*....|....*....
gi 1236769352 235 SKAPSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  359 RRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 1.46e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  13 LMLGTFITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAA------SALVLFSSTTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  87 TQLTHPA----------SCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPT---- 152
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236769352 153 ----LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTMMTAAVFLTL 219
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-270 1.84e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.38  E-value: 1.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   7 LIFTLSlMLGtfITISSNHWAMaWAGLEINTLAILPLISKSHH-PRSIEAATKYFLTQAA------ASALVLFssttnaW 79
Cdd:COG1009   118 LLFMAA-MLG--LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVgdlgllLGILLLG------A 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  80 HTGQWDITQLTHPASCLI---LTSAIAI--------KLGLAPFHFWFPEVLQG-SPLTTgLLLSTIMK----FppMVLLL 143
Cdd:COG1009   188 IAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVkagvY--LLARL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 144 MTAHSLNPTLLTSMAI--LSTAL-GGWMGLNQTQTRKILAFSSISHLGWMAIII---SYSPKLtllnFYLYT-------- 209
Cdd:COG1009   265 SPLFALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgAYVAAL----FHLLThaffkall 340

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236769352 210 -MMTAAVFLTLNSTKVLKLSVLmttWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1009   341 fLGAGSVIHATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 8.42e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.61  E-value: 8.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 110 PFHFWFPEVLQG-SPLTTGLLLSTIMKfpPMVLLLMtahSLNP---------TLLTSMAILSTALGGWMGLNQTQTRKIL 179
Cdd:PRK12647  213 PFHFWLPNAMEApTPVSAYLHSATMVK--AGIYLLA---RLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLIL 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 180 AFSSISHLGWMAIIISYSPKLTLLNFYLY----TMMTAAVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSL 251
Cdd:PRK12647  288 AYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAgiidHETGTRDITKLGGLRRAMPITAAAALLAALSM 367

                         170
                  ....*....|....*
gi 1236769352 252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647  368 AGLPPLFGFLAKELI 382
PRK12650 PRK12650
DUF4040 family protein;
98-263 1.04e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 47.35  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  98 LTSAIAIKLGLA--------PFHFWFPEVLQG-SPLTTGLLLSTIMKFPPMVLLLMTA-HSLNPT---LLTSMAILSTAL 164
Cdd:PRK12650  206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLRFSPvFHDVAVwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLlnfylytmmTAAVFLTLnSTKVLKLSVLMTT----------- 233
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFAL---------TAAVVHTL-AHALFKSSLFMLIgvvdhqagtrd 355

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1236769352 234 -------WSKAPSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  356 irrlgslWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 1.23e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.88  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 105 KLGLapfHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLL-----LMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 180 AFSSISHLGWMAIIISY--SPKLTLLNFYLYTMMTAAVFL---------TLNSTKVLKLSVLMTTwskAPSLNAMLMLTL 248
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|
gi 1236769352 249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLILE 414
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-282 1.93e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.10  E-value: 1.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  34 EINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFS--------STTNAWHTGQwDITQLTHPASCLILTS----A 101
Cdd:PRK12663  138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGigllygtfGTLNMAHIAM-RLNDMGDTATLTTIALlfllA 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 102 IAIKLGLAPFhFWFPEVLQGSPLTTGLLLSTIMK-------FPPMVLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQ 174
Cdd:PRK12663  217 FGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKD 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 175 TRKILAFSSISHLGWMAIIISYSPKLTLLN--FYLYTMMT--AAVFLTLNSTKVL----KLSVLMTTWSKAPSLNAMLML 246
Cdd:PRK12663  296 IRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLI 375

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1236769352 247 TLLSLAGLPPLTGFLPKWLIIQ-ELTKQDMVLAAMTI 282
Cdd:PRK12663  376 LIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALML 412
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.33e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.33  E-value: 3.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTH--PASCLILTSAIAIKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 111 FHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPT--LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 189 WMAIIISYSPKLTLLnfylYTMMTAAVFLTLNSTKVLKLSVLMTTwSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07234  283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFTELISQ-MLGIGKWIPLTMASFSIAGFPLLAGFVSKVLTLK 357


                  ...
gi 1236769352 269 ELT 271
Cdd:PRK07234  358 NLL 360
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 4.57e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 45.09  E-value: 4.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  55 AATKYFLTQAAASALVLFSSTTNAWHTGQWD------ITQLTHPASCLILTSAI----AIKLGLAPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 124 LTTGLLLSTIMKFPPMVLLLM-------TAHSLNPTLLTSMAIlSTALGGWMGLNQTQTRKILAFSSISHLGW------- 189
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaa 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 190 ---------MAIIISYSPKLTLLnFYLYTMMTAAVfltlnSTKVL-KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTG 259
Cdd:PRK07363  317 gtqlsllgaVAQMISHGLILALL-FHLVGIVERKV-----GTRDLdVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVG 390


                  ....*....
gi 1236769352 260 FLPKWLIIQ 268
Cdd:PRK07363  391 FVAEFIVFQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 4.58e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.11  E-value: 4.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  55 AATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPA-----SCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 130 LSTIM-KFPPMVLLLMTAHSLNPTLLTSMAIL-----STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLL 203
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 204 NFYLYTMMT--AAVFLTLNSTkVLKLSVLMTTWS------------------KAPSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK08667  323 GLDTLALLAlgGALFHSLNHA-LFKSLLFLTAGSvvhatgtrniekmgglvkLMPYTSALFLVGAVSIAALPPFNGFASE 401


                  ....*..
gi 1236769352 264 WLIIQEL 270
Cdd:PRK08667  402 LLLYESF 408
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 6.64e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.34  E-value: 6.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  96 LILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLS------TIMKFPPMVLLLMTAHSLNPTL-----LTSMAILSTAL 164
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstkvMIYLIIRIVYDVFKANFVFTTLpfnnvFMILAALAIVF 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLY----TMMTAAVFLTLNSTK----VLKLSVLMTTWSK 236
Cdd:PRK12662  293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKS 372

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1236769352 237 APSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 7.40e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.43  E-value: 7.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  48 HHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPASC--------LILTSAIAIKLGLA------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 114 WFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPT-----LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 189 WMAIIISYSPK------LTLLNFYLYTMMT--AAVFLTLN-------STKVLKLSVLMttwSKAPSLNAMLMLTLLSLAG 253
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLLNHATfkACLFLVAGivaheaaTRDIRKLGGLR---KEMPITFIVASIAALAMAG 392

                         250
                  ....*....|
gi 1236769352 254 LPPLTGFLPK 263
Cdd:PRK12649  393 IPPLNGFLSK 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-276 1.42e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 43.65  E-value: 1.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352   2 NPQAKLIFTLSLMLGTFITISSNHWAMaWAGLEINTLAILPLISKSHHPRSIEAATKYFLTqAAASALVLF--------S 73
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpaviliyT 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  74 STTNAWHTGQWDITQLTHPASCLILTSAIAiKLGLAPFHFWFPEVLQGSPLTTGLLLSTIM----KFPPMVLLLMTAHSL 149
Cdd:PRK06589  193 KTGNLDFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLS 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 150 NPTLLTSM-------AILSTALGGWMGLNQTQTRKILAFSSISHLGWM----AIIISYSPKLTLLNFYLYTMMTAAVFLT 218
Cdd:PRK06589  272 YLQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAllsaFILTPKALGAAILHLVSHSFAKICLFYS 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236769352 219 LNSTKVLK----LSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMV 276
Cdd:PRK06589  352 MGSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP 413
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 1.46e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  55 AATKYFLTQAAASALVLFSSTTNAWHTGQWDI---TQLTHP---ASCLILTSAI----AIKLGLAPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTlplSTQLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 124 LTTGLLLSTIMKFPPMVLL------LMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYS 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 198 PKLTLLNFYL----YTMMTAAVFLTL-------NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473  318 TPLSILAAVFqmisHGLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 1.87e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.99  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 101 AIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTI-----------MKFPpmvLLLMTAHSLNPTLLtSMAILSTALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIllklggyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 170 LNQTQTRKILAFSSISHLGWMAIIIsYSPKLTLLNFYLYTMMTAAVFLTL-----------NSTKVLK----LSVLMTTW 234
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITL-VTHDIIGLTGSIFIMLAHGIVSSLlfilvtilydrHHTRLIKyyrgLSITMPIW 393

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1236769352 235 SkapslnAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226  394 G------TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-267 3.58e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.11  E-value: 3.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  50 PRSIEAATKYFLTQAAASALVLFS----STTNAWHTGQWDITQL------THPASCLILT--SAIAIKLGLAPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlplpPGVQYWLFLAffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 118 VLQGSPLTTGLLLSTImkfppmvlLLMTA----------------HSLNPTLLTsMAILSTALGGWMGLNQTQTRKILAF 181
Cdd:PRK05846  237 AHVQAPTAGSVLLAGI--------LLKMGaygllrfslplfpdasHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAY 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 182 SSISHLGW--MAIIISYSPKLTLLNFYL--YTMMTAAVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAG 253
Cdd:PRK05846  308 SSISHMGFvtLGIFAGNQLGIQGAIFQMisHGLSSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLG 387

                         250
                  ....*....|....
gi 1236769352 254 LPPLTGFLPKWLII 267
Cdd:PRK05846  388 LPGTSGFVGEFLIL 401
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 3.73e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.33  E-value: 3.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  55 AATKYFLTQAAASALVLFSSTTNAWHTGQ--WDITQLTH---PASCLILTS-----AIAIKLGLAPFHFWFPEV-----L 119
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 120 QGSPLTTGLLLST----IMKFPpmVLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIIS 195
Cdd:PRK12561  218 PVSMILAGVLLKMggyaLIRFN--VQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-280 4.72e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.08  E-value: 4.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  15 LGTFITISSNHWAMAWAGLEINTLA---ILPLISKSHHPRSIEAATKYFLTqaaasALVLFSSTTNAWHTGQWDITQLTH 91
Cdd:PRK06459   83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGELST-----VLILAGFAWAFIISGTTNFSYLPS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  92 PASCLILTSAIAIKLGLAPFHF--WFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTAHSLNPT-------LLTSMAILST 162
Cdd:PRK06459  158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIpigyfglTILAIGAFSI 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 163 ALGGWMGLNQTQTRKILAFSSISHLGWM-----AIIISYSPKLTLLNFYLYTMMTAAVFLTLNSTKVLKLSVLMT----T 233
Cdd:PRK06459  238 LFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLSSGLQEkqsiT 317

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1236769352 234 WSKAPSLNAM---LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAM 280
Cdd:PRK06459  318 YSKKIRNRWIelgLTLLASSLSGLLPNIGGVASWLLLESLFMFAYVLHNV 367
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 5.57e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.49  E-value: 5.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  96 LILTSAIAIKLGLAPFHFWFPEVLQG--SPLTT---GLLlsTIMKFPPMV---LLLMTAHSLNpTLLTSMAILSTALGGW 167
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTapAPVTAvfaGLL--TKVGVYAIIrthTLLFPGGGLD-TLLMVVALLTMVVGIL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 168 MGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYT----MMTAAVFLTLN-------STKVLKLSVLMTTwsk 236
Cdd:PRK12665  290 GAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGlierqagSSSLRRLGGLAKA--- 366

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1236769352 237 APSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-268 5.99e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.47  E-value: 5.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 103 AIKLGLAPFHFWFPEVLQGSP---------LTTGLLLSTIMKfppmVLLLMTAHSLNPT--LLTSMAILSTALGGWMGLN 171
Cdd:PRK07691  220 ATKAGLFPLYFWLPGSYYAPPiaiaalfgaLLTKVGVYAIAR----TFTLFFSHDTSFThyLILILALLTIIFGVIGAVA 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 172 QTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTM----MTAAVFLTL-------NSTKVLKLSVLMTTWskaPSL 240
Cdd:PRK07691  296 YFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIhdmiVKAALFLLIgimikitGTTDLKKMGGLIKRY---PVL 372

                         170       180
                  ....*....|....*....|....*...
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07691  373 GWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK12646 PRK12646
DUF4040 family protein;
110-272 2.14e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.12  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 110 PFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLL-----LMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSI 184
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 185 SHLGW-MAII-----ISYSPKLTLLNFY-------LYTMMTAAVF---------LTLNSTKVLKLSVLMTTWSKAPSLNA 242
Cdd:PRK12646  308 SQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcalfmgvgIIDHEAGTRDIRILSGMRQLFPKMNL 387

                         170       180       190
                  ....*....|....*....|....*....|
gi 1236769352 243 MLMLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646  388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-316 3.11e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.29  E-value: 3.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352  95 CLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMVLLLMTA--HSLNPTLLTSMAI---LSTALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplFEQAPLALIIVTIvgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 170 LNQTQTRKILAFSSISHLGWMAIIISYSP-KLTLLNFYLYTMMTAAVFLTLNST--------KVLKLSVLMttwSKAPSL 240
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACGLSHySISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLI---SFLPLT 369

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236769352 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFY-LRLAYCATITLPPHTTNHMKQWH 316
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYsIRLIYLTFLSNTNLKKAVFFHLH 446
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 157-267 3.91e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 38.80  E-value: 3.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236769352 157 MAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYS---PKLTLLN--FYLYT--------MMTAAVF-LTLNST 222
Cdd:PRK06525  278 MAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGsiAYIFNhafakslfFLVAGALsYSCGTR 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1236769352 223 KVLKLSVLMttwSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK06525  358 LLPRLRGVL---KKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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