NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1237940379|gb|ASV65198|]
View 

cytochrome b, partial (mitochondrion) [Zapus princeps]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 745.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00100   10 LMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00100   90 FFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00100  170 VDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00100  250 LGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLV 329

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLKW 370
Cdd:MTH00100  330 ADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 745.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00100   10 LMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00100   90 FFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00100  170 VDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00100  250 LGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLV 329

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLKW 370
Cdd:MTH00100  330 ADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-364 1.11e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 379.52  E-value: 1.11e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   9 FIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 88
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  89 VGRGLYYGSYTFIE--TWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATL 166
Cdd:COG1290   107 MFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATL 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 167 TRFFAFH-FILPFIIAAMAIVHLLFLHETGSNNPLG----LVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDll 241
Cdd:COG1290   187 NRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI-- 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 242 GDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWAL 319
Cdd:COG1290   265 NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1237940379 320 VADLMTLTWIGGQPvePPFIMIGQVASILYFSIILIFLPLASSLE 364
Cdd:COG1290   345 IVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-197 2.44e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.04  E-value: 2.44e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:cd00284     2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSY--TFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGG 158
Cdd:cd00284    82 FFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1237940379 159 FSVDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSN 197
Cdd:cd00284   162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
9-195 6.75e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 268.10  E-value: 6.75e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   9 FIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 88
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  89 VGRGLYYG--SYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATL 166
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1237940379 167 TRFFAFHFILPFIIAAMAIVHLLFLHETG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 249-330 2.04e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 2.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 249 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIF-RPISQCLYwaLVADLMTLt 327
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 1237940379 328 WIG 330
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 745.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00100   10 LMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00100   90 FFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00100  170 VDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00100  250 LGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLV 329

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLKW 370
Cdd:MTH00100  330 ADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 684.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00119   11 LLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASM 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00119   91 FFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00119  171 VDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00119  251 LGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLV 330

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLKW 370
Cdd:MTH00119  331 ANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 663.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00131   10 LLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00131   90 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00131  170 VDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00131  250 LGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLV 329

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLKW 370
Cdd:MTH00131  330 ADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 661.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00074   11 LLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00074   91 FFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00074  171 VDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00074  251 LGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLV 330

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLKW 370
Cdd:MTH00074  331 ANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-359 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 626.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00191    7 LLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00191   87 FFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00191  167 VDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00191  247 LGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWV 326

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPL 359
Cdd:MTH00191  327 ANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 2-356 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 616.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   2 MKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMF 81
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  82 FICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSV 161
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 162 DKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDLL 241
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 242 GDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALVA 321
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1237940379 322 DLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIF 356
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 591.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00145   11 VLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00145   91 FFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00145  171 VGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00145  251 LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIfLPLASSLENKLL 368
Cdd:MTH00145  331 GNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-368 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 591.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00034   10 LFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00034   90 FFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00034  170 VDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTA 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00034  250 LNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLI 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLL 368
Cdd:MTH00034  330 ATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-369 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 555.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00016   11 LIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00016   91 FFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00016  171 VDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNI 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00016  251 LGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSiILIFLPLASSLENKLLK 369
Cdd:MTH00016  331 SNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-369 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 510.02  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00053   11 VISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASM 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00053   91 FFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00053  171 VSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00053  251 LGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLK 369
Cdd:MTH00053  331 GDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-369 1.42e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 503.08  E-value: 1.42e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00022    9 LLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00022   89 FFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00022  169 VSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00022  249 LGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLI 328

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFLPLASSLENKLLK 369
Cdd:MTH00022  329 VDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-369 1.23e-175

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 493.28  E-value: 1.23e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00224   11 AIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASM 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00224   91 FFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDL 240
Cdd:MTH00224  171 VDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 241 LGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALV 320
Cdd:MTH00224  251 FTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1237940379 321 ADLMTLTWIGGQPVEPPFIMIGQVASILYFSiILIFLPLASSLENKLLK 369
Cdd:MTH00224  331 TSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 10-365 1.16e-137

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 397.00  E-value: 1.16e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  10 IDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 89
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  90 GRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRF 169
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 170 FAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKD--ALGVLLMLLFLLSLVLFSPDLLGDPDNY 247
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDilGFLILFGVFVIIGIEPRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 248 TPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALVADLMTLT 327
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1237940379 328 WIGGQPV-EPPFIMIGQVASILYFSIILIFLPLASSLEN 365
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-364 1.11e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 379.52  E-value: 1.11e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   9 FIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 88
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  89 VGRGLYYGSYTFIE--TWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATL 166
Cdd:COG1290   107 MFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATL 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 167 TRFFAFH-FILPFIIAAMAIVHLLFLHETGSNNPLG----LVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDll 241
Cdd:COG1290   187 NRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI-- 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 242 GDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWAL 319
Cdd:COG1290   265 NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1237940379 320 VADLMTLTWIGGQPvePPFIMIGQVASILYFSIILIFLPLASSLE 364
Cdd:COG1290   345 IVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 3-357 1.61e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 360.02  E-value: 1.61e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   3 KIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFF 82
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  83 ICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVD 162
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 163 KATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDAlGVLLMLLFLLSLVLFSPDLLG 242
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA-YNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 243 DPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANqrsMIFRPISQCLYWALVAD 322
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYT---SCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1237940379 323 LMTLTWIGGQPVEPPFIMIGQVASILYFSIILIFL 357
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-197 2.44e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.04  E-value: 2.44e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:cd00284     2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSY--TFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGG 158
Cdd:cd00284    82 FFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1237940379 159 FSVDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSN 197
Cdd:cd00284   162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 1-356 3.41e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 287.65  E-value: 3.41e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   1 LMKIINESFIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASM 80
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  81 FFICLFLHVGRGLYYGSYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 160
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 161 VDKATLTRFFAFHFILPFIIAAMAIVHLLFLHETGSNNPLGLVSD-ADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPD 239
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 240 LLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIaLVLSILVLAIVPllhnANQRSMIFRPISQCLYWAL 319
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1237940379 320 VADLMTLTWIGGQPVEPPFIMIGQVASILYFSIILIF 356
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
9-195 6.75e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 268.10  E-value: 6.75e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379   9 FIDLPTPSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 88
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  89 VGRGLYYG--SYTFIETWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATL 166
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1237940379 167 TRFFAFHFILPFIIAAMAIVHLLFLHETG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 198-345 7.13e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 166.67  E-value: 7.13e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 198 NPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVLFSPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPN 277
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1237940379 278 KLGGVIALVLSILVLAIVPLLHNANQRSMiFRPISQCLYWALVADLMTLTWIGGQPVEPPFIMIGQVA 345
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
249-349 2.71e-45

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 150.71  E-value: 2.71e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 249 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIFRPISQCLYWALVADLMTLTW 328
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1237940379 329 IGGQPVEPPFIMIGQVASILY 349
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 24-200 6.64e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 146.01  E-value: 6.64e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  24 FGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYTFIE- 102
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 103 -TWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 180
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1237940379 181 AAMAIVHLLFLHETGSNNPL 200
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
79-244 3.23e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 140.07  E-value: 3.23e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  79 SMFFICLFLHVGRGLYYGSYTFIE--TWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIW 156
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 157 GGFSVDKATLTRFFAFHF-ILPFIIAAMAIVHLLFLHETGSNNPLGLVSDADKIPFHPYYTVKDALGVLLMLLFLLSLVL 235
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1237940379 236 FSPDLLGDP 244
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 15-200 3.00e-36

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 131.00  E-value: 3.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  15 PSNISAWWNFGSLLGACLIIQIITGLFLAMHYTSDTSSAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLY 94
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379  95 YGSYTFIE--TWNIGILLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAF 172
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1237940379 173 H-FILPFIIAAMAIVHLLFLHETGSNNPL 200
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 249-330 6.07e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.27  E-value: 6.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 249 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIF-RPISQCLYwaLVADLMTLt 327
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF--LFGTLVTL- 142


                  ...
gi 1237940379 328 WIG 330
Cdd:COG5679   143 WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 249-312 1.30e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.33  E-value: 1.30e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1237940379 249 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQ-RSMIFRPIS 312
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKfQNPFRRPVA 129
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 249-330 2.04e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 2.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940379 249 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLAIVPLLHNANQRSMIF-RPISQCLYwaLVADLMTLt 327
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 1237940379 328 WIG 330
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH