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Conserved domains on  [gi|1240212093|gb|ASX98317|]
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cytochrome b, partial (mitochondrion) [Pleurodeles waltl]

Protein Classification

cytochrome b( domain architecture ID 1000033)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31791
cytochrome b; Provisional
 1-132 2.47e-101

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00074:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 294.28  E-value: 2.47e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   1 IMRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNI 80
Cdd:MTH00074    4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1240212093  81 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00074   84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-132 2.47e-101

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 294.28  E-value: 2.47e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   1 IMRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNI 80
Cdd:MTH00074    4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1240212093  81 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00074   84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-132 2.56e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.70  E-value: 2.56e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   7 PLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1240212093  87 FFFICIYMHIGRGLYYGSYM--FKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-132 1.23e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.08  E-value: 1.23e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093  16 FIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFFFICIYMH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1240212093  96 IGRGLYYG--SYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-132 2.51e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.10  E-value: 2.51e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   9 LKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFF 88
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1240212093  89 FICIYMHIGRGLYYGSYmfKE----TWNIGVVLLFLVMATAFVGYVLP 132
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-132 2.47e-101

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 294.28  E-value: 2.47e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   1 IMRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNI 80
Cdd:MTH00074    4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1240212093  81 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00074   84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00131
cytochrome b; Provisional
 2-132 6.66e-96

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 280.77  E-value: 6.66e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00119
cytochrome b; Provisional
 1-132 9.27e-95

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 277.55  E-value: 9.27e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   1 IMRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNI 80
Cdd:MTH00119    4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1240212093  81 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00119   84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00100
cytochrome b; Provisional
 2-132 1.29e-94

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 277.29  E-value: 1.29e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00100    4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00100   84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00191
cytochrome b; Provisional
 2-132 3.54e-90

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 265.63  E-value: 3.54e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00156
cytochrome b; Provisional
 9-132 1.13e-83

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 248.54  E-value: 1.13e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   9 LKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFF 88
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1240212093  89 FICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00034
cytochrome b; Validated
 2-132 5.87e-83

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 247.70  E-value: 5.87e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 2-132 7.89e-81

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 242.12  E-value: 7.89e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00145    5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00145   85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 2-132 1.77e-78

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 236.11  E-value: 1.77e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 2-132 6.05e-66

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 204.38  E-value: 6.05e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 2-132 2.06e-64

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 200.31  E-value: 2.06e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 2-132 3.84e-61

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 191.84  E-value: 3.84e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-132 2.56e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.70  E-value: 2.56e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   7 PLLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1240212093  87 FFFICIYMHIGRGLYYGSYM--FKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLP 128
CYTB MTH00033
cytochrome b; Provisional
 2-132 1.69e-49

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 162.03  E-value: 1.69e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   2 MRKTHPLLKIinNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIH 81
Cdd:MTH00033    3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1240212093  82 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-132 1.23e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.08  E-value: 1.23e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093  16 FIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFFFICIYMH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1240212093  96 IGRGLYYG--SYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-132 2.51e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.10  E-value: 2.51e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   9 LKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFF 88
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1240212093  89 FICIYMHIGRGLYYGSYmfKE----TWNIGVVLLFLVMATAFVGYVLP 132
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 10-132 4.67e-41

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 139.30  E-value: 4.67e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093  10 KIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFFF 89
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1240212093  90 ICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 8-132 3.73e-29

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 108.15  E-value: 3.73e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093   8 LLKIINNSFIDLPTPSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASF 87
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1240212093  88 FFICIYMHIGRGLYYGSYMFKETWNIGVVLLFLVMATAFVGYVLP 132
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 31-132 2.79e-20

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 82.45  E-value: 2.79e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093  31 FGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFFFICIYMHIGRGLYYGSYMFKE- 109
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100
                  ....*....|....*....|....
gi 1240212093 110 -TWNIGVVLLFLVMATAFVGYVLP 132
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 22-132 1.33e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 64.36  E-value: 1.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1240212093  22 PSNISYWWNFGSLLGICLITQIMTGLFLAMHYTADTCSAFSSVAHICRDVNYGWLVRNIHANGASFFFICIYMHIGRGLY 101
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1240212093 102 YGSymFKE----TWNIGVVLLFLVMATAFVGYVLP 132
Cdd:CHL00070  107 TGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-132 2.68e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 54.94  E-value: 2.68e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1240212093  86 SFFFICIYMHIGRGLYYGSYMFKE--TWNIGVVLLFLVMATAFVGYVLP 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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