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Conserved domains on  [gi|1275874073|gb|ATU74709|]
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cytochrome b (mitochondrion) [Plasmodium sp. vivax/simium]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 13-354 4.55e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 300.55  E-value: 4.55e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVL----VIWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLgtdlVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFnnIFILFLLQSIFGIIP--LSHPDN 245
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGF--IIMLMLLILLTLINPylLGDPEN 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 246 AILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAG-----LLIVLASLQLLFLLAEQRSLTTIIQFKMtfgareysvpMI 320
Cdd:MTH00156  246 FIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGvialvMSILILMILPFTNKSKFRGNQFYPINKI----------LF 315

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1275874073 321 WFMCSFYALL-WIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00156  316 WIFVNIVILLtWIGARPVEEPYILTGQILTILYFL 350
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-354 4.55e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 300.55  E-value: 4.55e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVL----VIWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLgtdlVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFnnIFILFLLQSIFGIIP--LSHPDN 245
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGF--IIMLMLLILLTLINPylLGDPEN 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 246 AILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAG-----LLIVLASLQLLFLLAEQRSLTTIIQFKMtfgareysvpMI 320
Cdd:MTH00156  246 FIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGvialvMSILILMILPFTNKSKFRGNQFYPINKI----------LF 315

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1275874073 321 WFMCSFYALL-WIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00156  316 WIFVNIVILLtWIGARPVEEPYILTGQILTILYFL 350
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-283 2.16e-79

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 248.94  E-value: 2.16e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  12 HLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYL 91
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDP 164
Cdd:COG1290   106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFNNIFILFLLqsIFGII 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGFFVFLGVFAL--LAFFF 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1275874073 239 PLSHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIP--SKTAGLLI 283
Cdd:COG1290   263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIA 309
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 12-197 4.70e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 192.58  E-value: 4.70e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  12 HLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYL 91
Cdd:cd00284     9 SLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  92 HILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPT 165
Cdd:cd00284    89 HIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVigitLVEWLWGGFSVDNAT 168

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1275874073 166 IKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284   169 LTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 6.34e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 168.71  E-value: 6.34e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVIWLC----GGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVewiwGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1275874073 167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-354 4.55e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 300.55  E-value: 4.55e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVL----VIWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLgtdlVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFnnIFILFLLQSIFGIIP--LSHPDN 245
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGF--IIMLMLLILLTLINPylLGDPEN 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 246 AILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAG-----LLIVLASLQLLFLLAEQRSLTTIIQFKMtfgareysvpMI 320
Cdd:MTH00156  246 FIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGvialvMSILILMILPFTNKSKFRGNQFYPINKI----------LF 315

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1275874073 321 WFMCSFYALL-WIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00156  316 WIFVNIVILLtWIGARPVEEPYILTGQILTILYFL 350
CYTB MTH00145
cytochrome b; Provisional
 13-355 1.16e-95

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 289.88  E-value: 1.16e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00145   19 LYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTIK 167
Cdd:MTH00145   99 IGRGLYYgSYLMQH-TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYvgkmLVEWVWGGFSVGNATLK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNA 246
Cdd:MTH00145  178 RFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 247 ILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTIIQFKMTFgareysvpmiW 321
Cdd:MTH00145  258 IPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIalvmsIVILFFLPLLHVGKFRSLSFYPLNQVLF----------W 327

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1275874073 322 FMCSFYALL-WIGCQLPQDIFILYGRLFIISFFSS 355
Cdd:MTH00145  328 IFVGNFFILtWIGACPVEEPYETIGQVFTVLYFLF 362
CYTB MTH00191
cytochrome b; Provisional
 17-361 2.33e-95

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 288.74  E-value: 2.33e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  17 PCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRG 96
Cdd:MTH00191   19 PSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRG 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  97 LNY-SYLYLpLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTIKRFFV 171
Cdd:MTH00191   99 LYYgSYLNK-ETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYigddLVQWLWGGFSVDNATLTRFFT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 172 LHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNAILVN 250
Cdd:MTH00191  178 FHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPAN 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 251 TYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTIIQFKMTFgareysvpmiWFM-C 324
Cdd:MTH00191  258 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLalvmsILVLFLLPLLHTSKQRSNTFRPLTQVVF----------WLWvA 327

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1275874073 325 SFYALLWIGCQLPQDIFILYGRLFIISFFSSGLFALV 361
Cdd:MTH00191  328 NFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00119
cytochrome b; Provisional
 13-360 1.87e-91

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 279.48  E-value: 1.87e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00119   19 LIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----VLVIWLCGGYTVSDPTIK 167
Cdd:MTH00119   99 IGRGLYYgSYLYKE-TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGFSVDNPTLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNA 246
Cdd:MTH00119  178 RFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 247 ILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSlttiiqfkMTFgaREYSVPMIW 321
Cdd:MTH00119  258 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLalaasILILFLMPFLHTSKQRS--------MTF--RPLSQLLFW 327

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1275874073 322 FMCS-FYALLWIGCQLPQDIFILYGRLFIISFFSSGLFAL 360
Cdd:MTH00119  328 TLVAnLLILTWIGSQPVEHPFIIIGQLASILYFTILLILF 367
CYTB MTH00016
cytochrome b; Validated
 13-354 8.24e-88

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 270.01  E-value: 8.24e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00016   19 LVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----VLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00016   99 IGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGFSVDNATLTR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNAI 247
Cdd:MTH00016  179 FFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFI 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 248 LVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLASLQLLFLlaeqrsLTTIIQFKMTfGAREYSVPMI--WFMCS 325
Cdd:MTH00016  259 PANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFF------LPFIFKQKFR-GLSFYPLNQIlfWLLVS 331

                         330       340       350
                  ....*....|....*....|....*....|
gi 1275874073 326 FYALL-WIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00016  332 NFLLLtWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00100
cytochrome b; Provisional
 13-354 1.72e-86

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 266.50  E-value: 1.72e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00100   18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTIK 167
Cdd:MTH00100   98 VGRGLYYgSYLFLE-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYigttLVEWIWGGFSVDKATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNA 246
Cdd:MTH00100  177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 247 ILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSlttiiqfkMTFgaREYSVPMIW 321
Cdd:MTH00100  257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLalllsILILAIIPLLHTSKQRS--------MMF--RPLSQCLFW 326

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1275874073 322 FMCS-FYALLWIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00100  327 LLVAdLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00131
cytochrome b; Provisional
 13-354 3.71e-86

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 265.75  E-value: 3.71e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00131   18 LVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----VLVIWLCGGYTVSDPTIK 167
Cdd:MTH00131   98 IGRGLYYgSYLYKE-TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNA 246
Cdd:MTH00131  177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSdADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 247 ILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTiiqfkmtfgaREYSVPMIW 321
Cdd:MTH00131  257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLallfsILVLMVVPILHTSKQRGLTF----------RPLTQFLFW 326

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1275874073 322 FMCSFYALL-WIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00131  327 TLVADVLILtWIGGMPVEHPFIIIGQVASVLYFS 360
CYTB MTH00074
cytochrome b; Provisional
 17-353 4.89e-84

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 260.38  E-value: 4.89e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  17 PCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRG 96
Cdd:MTH00074   23 PTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRG 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  97 LNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----VLVIWLCGGYTVSDPTIKRFFV 171
Cdd:MTH00074  103 LYYgSYMYKE-TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFSVDKATLTRFFA 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 172 LHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNAILVN 250
Cdd:MTH00074  182 FHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPdKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 251 TYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTiiqfkmtfgaREYSVPMIWFMCS 325
Cdd:MTH00074  262 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLallasILILMLIPMLHTSKQRSLMF----------RPLTQILFWLLVA 331

                         330       340
                  ....*....|....*....|....*....
gi 1275874073 326 FYALL-WIGCQLPQDIFILYGRLFIISFF 353
Cdd:MTH00074  332 NTLILtWIGGQPVEDPFIEIGQAASILYF 360
CYTB MTH00034
cytochrome b; Validated
 13-360 6.47e-80

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 249.62  E-value: 6.47e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00034   18 LIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----VLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00034   98 IGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGFSVDNATLTR 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNAI 247
Cdd:MTH00034  178 FFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFI 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 248 LVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTiiqfkmtfgaREYSVPMIWF 322
Cdd:MTH00034  258 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIalvaaILVLFLVPILHTSNNQSSTF----------RPLSQIAFWL 327

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1275874073 323 MCS-FYALLWIGCQLPQDIFILYGRLFIISFFSSGLFAL 360
Cdd:MTH00034  328 LIAtFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFF 366
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-283 2.16e-79

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 248.94  E-value: 2.16e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  12 HLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYL 91
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDP 164
Cdd:COG1290   106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFNNIFILFLLqsIFGII 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGFFVFLGVFAL--LAFFF 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1275874073 239 PLSHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIP--SKTAGLLI 283
Cdd:COG1290   263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIA 309
CYTB MTH00224
cytochrome b; Provisional
 6-354 6.16e-79

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 247.14  E-value: 6.16e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073   6 INLAKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00224   12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  86 FLLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTV 161
Cdd:MTH00224   92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYigkdLVEWIWGGFAV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPL 240
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 241 SHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTIIQFKMTFgarey 315
Cdd:MTH00224  252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVValfaaILILFILPLTSVMNKRSLPFYPLNQLLF----- 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1275874073 316 svpmiW-FMCSFYALLWIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00224  327 -----WlLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00022
cytochrome b; Validated
 13-354 3.62e-77

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 242.68  E-value: 3.62e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00022   17 LVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIH 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNY-SYLYLPLsWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTIK 167
Cdd:MTH00022   97 IGRGLYYgGYLKFHV-WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYvgtdIVQWVWGGFSVSNATLN 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNA 246
Cdd:MTH00022  176 RFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 247 ILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTIIQFKMTFgareysvpmiW 321
Cdd:MTH00022  256 IQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVamffsILILFFLPLLHTSWLRGLTFRPLGRMAF----------W 325

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1275874073 322 FMCSFYALL-WIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00022  326 FLIVDFILLtWIGSQVVEEPFILIGQLLSFFYFF 359
CYTB MTH00053
cytochrome b; Provisional
 6-354 5.45e-75

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 237.30  E-value: 5.45e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073   6 INLAKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00053   12 ISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  86 FLLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTV 161
Cdd:MTH00053   92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYvgddIVRWVWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGfnNIFILFLLQSIFGIIP- 239
Cdd:MTH00053  172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIdKIPFHYYYVLKDLYG--AVILLIILSIIVFLFPy 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 240 -LSHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLASLQLLFLLaeqrSLTTIIQFK-MTFgaREYSV 317
Cdd:MTH00053  250 sLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFL----PYLHKSRFRgLSF--RPLSK 323

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1275874073 318 PMIWFMCS-FYALLWIGCQLPQDIFILYGRLFIISFFS 354
Cdd:MTH00053  324 ILFWFLVGdFFLLTWIGGQPVEEPYILIGQIASIFYFA 361
CYTB MTH00086
cytochrome b; Provisional
 17-283 2.33e-72

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 229.44  E-value: 2.33e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  17 PCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRG 96
Cdd:MTH00086   11 PSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  97 LNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTIKRFFVL 172
Cdd:MTH00086   91 LFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIwgpsIVMWIWGGFGVSSATLKFFFVL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 173 HFILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLSLDvkGFNNIFIL-FLLQSIFGIIPLSHPDNAILVN 250
Cdd:MTH00086  171 HFLLPWGLLVLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYWNKD--AYNIIFWLvFIIFSLFYPFNLGDPEMFIEAD 248

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1275874073 251 TYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLI 283
Cdd:MTH00086  249 PMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIA 281
CYTB MTH00033
cytochrome b; Provisional
 13-353 1.56e-65

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 212.88  E-value: 1.56e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----VLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGY-DTALKIPFYPNLLSLDVKGFnniFILFLLQSIFGIIP-----LSH 242
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEPrietlLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 243 PDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRSLTTIIQFKMTFgareysv 317
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLalfasILVLLLMPILDRSKIRSLTFNPTGKFFF------- 324

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1275874073 318 pmiWFMC-SFYALLWIG-CQLPQDIFILYGRLFIISFF 353
Cdd:MTH00033  325 ---WFIVgDFIILTWIGsAPAGADPYVLIGRIATIFYF 359
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 12-197 4.70e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 192.58  E-value: 4.70e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  12 HLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYL 91
Cdd:cd00284     9 SLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  92 HILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPT 165
Cdd:cd00284    89 HIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVigitLVEWLWGGFSVDNAT 168

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1275874073 166 IKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284   169 LTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 6.34e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 168.71  E-value: 6.34e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVIWLC----GGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVewiwGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1275874073 167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 6-284 3.36e-49

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 169.39  E-value: 3.36e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073   6 INLAKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  86 FLLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTV 161
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIvgslVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLgydtalkipFYPNLLSlDVKGFN------NIFILFLLQSIF 235
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL---------FSSNGYS-DVVYFHsyftvkDLFLFMVVCSLL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1275874073 236 GIIPLSHPDNAILVNTY------VTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIV 284
Cdd:MTH00046  232 VFWLFVSPDLVLDIEAYleadplVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLV 286
PRK03735 PRK03735
cytochrome b6; Provisional
 24-200 1.16e-27

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 108.65  E-value: 1.16e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  24 FLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRGLNYSYLY 103
Cdd:PRK03735   40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 104 LP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTIKRFFVLH-FIL 176
Cdd:PRK03735  120 KPreLNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVigdfIKTLLRGGEIVGAQTLTRFFAIHvFFL 199

                         170       180
                  ....*....|....*....|....
gi 1275874073 177 PFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:PRK03735  200 PWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
90-243 1.02e-22

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 93.46  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  90 YLHILRGLNY-SYLYLP-LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSD 163
Cdd:pfam13631   8 YVHMLRIFFTgAYRKPReLNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVvgtwLVWLLFGGPFPGT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 164 PTIKRFFVLHF-ILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLS 241
Cdd:pfam13631  88 ATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGtEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLG 167


                  ..
gi 1275874073 242 HP 243
Cdd:pfam13631 168 GP 169
petB CHL00070
cytochrome b6
 19-200 4.11e-22

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 93.25  E-value: 4.11e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  19 PLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRgln 98
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073  99 ysyLYLP--------LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPV----LVIWLCGGYTVSDPTI 166
Cdd:CHL00070  104 ---VYLTggfkkpreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVigspLVELLRGSVSVGQSTL 180

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1275874073 167 KRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:CHL00070  181 TRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
250-352 9.01e-16

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.13  E-value: 9.01e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 250 NTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLASLQLLFLLAE-QRSLTTIIQFKMTFGAreysvpMIW-FMCSFY 327
Cdd:pfam00032   3 NPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWlDRSPVRSIRYRPLFKI------FFWlFVVDFV 76

                          90       100
                  ....*....|....*....|....*
gi 1275874073 328 ALLWIGCQLPQDIFILYGRLFIISF 352
Cdd:pfam00032  77 VLGWLGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-348 7.35e-14

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 68.44  E-value: 7.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874073 207 KIPFYPNLLSLDVKGFNNIFILFLLQSIFGIIPLSHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLA 286
Cdd:cd00290    11 KISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAA 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1275874073 287 SLQLLFLLAEQRSLTTIIQFKMTfgareYSVPMIWFMCSFYALLWIGCQLPQDIFILYGRLF 348
Cdd:cd00290    91 SILSLFLVPFLENSNKRSQFRPL-----RPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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