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Conserved domains on  [gi|1320655780|gb|AUK48115|]
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cytochrome b, partial (mitochondrion) [Vollenhovia emeryi]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-279 4.33e-152

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 428.82  E-value: 4.33e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00156   52 AFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFW 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00156  132 GATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFH 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00156  212 PYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILIL 291

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00156  292 MILPFTNKSKFrGNQFYPINKILFWIFVNIVILLTWIGAR 331
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-279 4.33e-152

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 428.82  E-value: 4.33e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00156   52 AFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFW 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00156  132 GATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFH 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00156  212 PYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILIL 291

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00156  292 MILPFTNKSKFrGNQFYPINKILFWIFVNIVILLTWIGAR 331
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-279 1.14e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 253.56  E-value: 1.14e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFT----LMhtWLIGVSIFLISMATAFLGYVLPWGQ 76
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQ 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  77 MSFWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILH-LYFLHHTGSSNPLGTNSNLN 155
Cdd:COG1290   149 LSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLhLWLLHRHGHNNPPGPERKKT 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 156 K----IPFHIYFSFKDILGFLLFQSIFLIIILQYPyiFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIP--NKLGG 229
Cdd:COG1290   229 EkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1320655780 230 VIALLSSILILYTLP-LMKLQTLSMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:COG1290   307 VIAMGLAILVLFLLPfLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-145 1.85e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 154.45  E-value: 1.85e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMH--TWLIGVSIFLISMATAFLGYVLPWGQMS 78
Cdd:cd00284    54 AFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMS 133

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1320655780  79 FWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSS 145
Cdd:cd00284   134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-143 1.73e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 144.06  E-value: 1.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMH--TWLIGVSIFLISMATAFLGYVLPWGQMS 78
Cdd:pfam00033  45 AFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMS 124

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1320655780  79 FWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTG 143
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 197-247 1.75e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 1.75e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1320655780 197 PANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILILYTLPLMK 247
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-279 4.33e-152

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 428.82  E-value: 4.33e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00156   52 AFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFW 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00156  132 GATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFH 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00156  212 PYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILIL 291

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00156  292 MILPFTNKSKFrGNQFYPINKILFWIFVNIVILLTWIGAR 331
CYTB MTH00145
cytochrome b; Provisional
 1-279 1.66e-143

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 407.75  E-value: 1.66e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00145   63 AFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00145  143 GATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00145  223 PYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVIL 302

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQT-LSMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00145  303 FFLPLLHVGKfRSLSFYPLNQVLFWIFVGNFFILTWIGAC 342
CYTB MTH00119
cytochrome b; Provisional
 1-279 1.19e-138

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 395.81  E-value: 1.19e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00119   63 AFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00119  143 GATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00119  223 PYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILIL 302

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00119  303 FLMPFLHTSKQrSMTFRPLSQLLFWTLVANLLILTWIGSQ 342
CYTB MTH00191
cytochrome b; Provisional
 1-279 3.84e-137

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 391.20  E-value: 3.84e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00191   59 AFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFW 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00191  139 GATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFH 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00191  219 PYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVL 298

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00191  299 FLLPLLHTSKQrSNTFRPLTQVVFWLWVANFILLTWLGGQ 338
CYTB MTH00016
cytochrome b; Validated
 1-279 1.52e-133

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 382.49  E-value: 1.52e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00016   63 AFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00016  143 GATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00016  223 PYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILIL 302

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00016  303 FFLPFIFKQKFrGLSFYPLNQILFWLLVSNFLLLTWIGGR 342
CYTB MTH00074
cytochrome b; Provisional
 1-279 1.50e-128

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 370.17  E-value: 1.50e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00074   63 AFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00074  143 GATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00074  223 PYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILIL 302

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00074  303 MLIPMLHTSKQrSLMFRPLTQILFWLLVANTLILTWIGGQ 342
CYTB MTH00131
cytochrome b; Provisional
 1-277 8.96e-127

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 365.51  E-value: 8.96e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00131   62 AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFW 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00131  142 GATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFH 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00131  222 PYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVL 301

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLM---KLQTLSmkFYPMTQILFWMFLNNFILLTWAG 277
Cdd:MTH00131  302 MVVPILhtsKQRGLT--FRPLTQFLFWTLVADVLILTWIG 339
CYTB MTH00034
cytochrome b; Validated
 1-279 2.05e-123

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 357.09  E-value: 2.05e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00034   62 AFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFW 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00034  142 AATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFH 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00034  222 TYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVL 301

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00034  302 FLVPILHTSNNqSSTFRPLSQIAFWLLIATFFILTWIGSQ 341
CYTB MTH00100
cytochrome b; Provisional
 1-279 2.79e-122

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 353.94  E-value: 2.79e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00100   62 AFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFW 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00100  142 GATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFH 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00100  222 PYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILIL 301

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00100  302 AIIPLLHTSKQrSMMFRPLSQCLFWLLVADLLTLTWIGGQ 341
CYTB MTH00022
cytochrome b; Validated
 1-280 1.86e-110

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 323.96  E-value: 1.86e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00022   61 AFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFW 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00022  141 GATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFH 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00022  221 VYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILIL 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQV 280
Cdd:MTH00022  301 FFLPLLHTSWLrGLTFRPLGRMAFWFLIVDFILLTWIGSQV 341
CYTB MTH00224
cytochrome b; Provisional
 1-277 1.10e-108

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 319.56  E-value: 1.10e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00224   63 AFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00224  143 GATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00224  223 PYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILIL 302

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1320655780 241 YTLPLM-KLQTLSMKFYPMTQILFWMFLNNFILLTWAG 277
Cdd:MTH00224  303 FILPLTsVMNKRSLPFYPLNQLLFWLLVTSWAILTWIG 340
CYTB MTH00053
cytochrome b; Provisional
 1-279 3.43e-106

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 313.18  E-value: 3.43e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00053   63 AFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00053  143 AATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00053  223 YYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVL 302

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:MTH00053  303 FFLPYLHKSRFrGLSFRPLSKILFWFLVGDFFLLTWIGGQ 342
CYTB MTH00033
cytochrome b; Provisional
 1-278 2.13e-89

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 270.66  E-value: 2.13e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00033   59 AFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFW 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00033  139 AATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFH 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQSIFLIIILQ--YPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSIL 238
Cdd:MTH00033  219 VYFTIKDILGFLILFGVFVIIGIEprIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASIL 298

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1320655780 239 ILYTLPLM-KLQTLSMKFYPMTQILFWMFLNNFILLTWAGA 278
Cdd:MTH00033  299 VLLLMPILdRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGS 339
CYTB MTH00086
cytochrome b; Provisional
 1-280 3.20e-83

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 253.71  E-value: 3.20e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFW 80
Cdd:MTH00086   51 AFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFW 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  81 GATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNKIPFH 160
Cdd:MTH00086  131 AAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFG 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 161 IYFSFKDILGFLLFQsIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILIL 240
Cdd:MTH00086  211 PEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVF 289

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1320655780 241 YTLPLMKLQTLSMKfyPMTQILFWMFLNNFILLTWAGAQV 280
Cdd:MTH00086  290 YFFIFVNNYTSCLN--KLNKFLVFSFIVVNVILSWLGQCL 327
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-279 1.14e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 253.56  E-value: 1.14e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFT----LMhtWLIGVSIFLISMATAFLGYVLPWGQ 76
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQ 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  77 MSFWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILH-LYFLHHTGSSNPLGTNSNLN 155
Cdd:COG1290   149 LSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLhLWLLHRHGHNNPPGPERKKT 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 156 K----IPFHIYFSFKDILGFLLFQSIFLIIILQYPyiFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIP--NKLGG 229
Cdd:COG1290   229 EkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1320655780 230 VIALLSSILILYTLP-LMKLQTLSMKFYPMTQILFWMFLNNFILLTWAGAQ 279
Cdd:COG1290   307 VIAMGLAILVLFLLPfLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357
CYTB MTH00046
cytochrome b; Validated
 16-278 1.44e-57

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 187.88  E-value: 1.44e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  16 WLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFWGATVITNLVSTIPYI 95
Cdd:MTH00046   68 WCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIV 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  96 GNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSSNPLGTNSNLNK-IPFHIYFSFKDILGFLLF 174
Cdd:MTH00046  148 GSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSDvVYFHSYFTVKDLFLFMVV 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 175 QSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILILYtLPLMKlqtLSMK 254
Cdd:MTH00046  228 CSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLW-VPTFN---GSSV 303

                         250       260
                  ....*....|....*....|....
gi 1320655780 255 FYPMTQILFWMFLNNFILLTWAGA 278
Cdd:MTH00046  304 YSVWRQVNFWLIVSLFFSLSYLGG 327
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-145 1.85e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 154.45  E-value: 1.85e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMH--TWLIGVSIFLISMATAFLGYVLPWGQMS 78
Cdd:cd00284    54 AFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMS 133

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1320655780  79 FWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTGSS 145
Cdd:cd00284   134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-143 1.73e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 144.06  E-value: 1.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMH--TWLIGVSIFLISMATAFLGYVLPWGQMS 78
Cdd:pfam00033  45 AFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMS 124

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1320655780  79 FWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLHFILPFIILLLVILHLYFLHHTG 143
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 146-280 2.51e-40

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 137.01  E-value: 2.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 146 NPLGTNSNLNKIPFHIYFSFKDILGFLLFQSIFLIIILQYPYIFSDPDNFTPANPMITPIHIQPEWYFLFAYAILRSIPN 225
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1320655780 226 KLGGVIALLSSILILYTLPLMKLQTLSMKFYPMTQILFWMFLNNFILLTWAGAQV 280
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQP 135
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
27-187 2.01e-31

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 114.65  E-value: 2.01e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780  27 SFFFITMYIHMSRNIYYSSF--TLMHTWLIGVSIFLISMATAFLGYVLPWGQMSFWGATVITNLVSTIPYIGNMIVMWIW 104
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYrkPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 105 GGFSINNATLNRFFSLHFILPFIILLLVILH-LYFLHHTGSSNPLGTNSNLNKIPFHIYFSFKDILGFLLFQSIFLIIIL 183
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLPGLILALIVAhLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....
gi 1320655780 184 QYPY 187
Cdd:pfam13631 161 INPI 164
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
197-280 4.36e-31

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 111.42  E-value: 4.36e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780 197 PANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILILYTLPLMKLQTL-SMKFYPMTQILFWMFLNNFILLTW 275
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVrSIRYRPLFKIFFWLFVVDFVVLGW 80


                  ....*
gi 1320655780 276 AGAQV 280
Cdd:pfam00032  81 LGKQP 85
PRK03735 PRK03735
cytochrome b6; Provisional
 1-121 2.04e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 89.77  E-value: 2.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMH--TWLIGVSIFLISMATAFLGYVLPWGQMS 78
Cdd:PRK03735   73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1320655780  79 FWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLH 121
Cdd:PRK03735  153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIH 195
petB CHL00070
cytochrome b6
 1-121 5.06e-19

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 83.23  E-value: 5.06e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320655780   1 AFSSMIHIMQNINNGWLMHNIHMNGASFFFITMYIHMSRNIYYSSFTLMH--TWLIGVSIFLISMATAFLGYVLPWGQMS 78
Cdd:CHL00070   65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1320655780  79 FWGATVITNLVSTIPYIGNMIVMWIWGGFSINNATLNRFFSLH 121
Cdd:CHL00070  145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLH 187
petD CHL00058
cytochrome b6/f complex subunit IV
 197-244 1.43e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 55.78  E-value: 1.43e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1320655780 197 PANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILILYTLP 244
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVP 112
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 197-247 8.64e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 53.64  E-value: 8.64e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1320655780 197 PANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILILYTLPLMK 247
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 197-247 1.75e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 1.75e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1320655780 197 PANPMITPIHIQPEWYFLFAYAILRSIPNKLGGVIALLSSILILYTLPLMK 247
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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