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Conserved domains on  [gi|1321822278|gb|AUN38237|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Uromastyx macfadyeni]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-228 2.38e-111

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 326.77  E-value: 2.38e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISGP 228
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPtHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-228 2.38e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 326.77  E-value: 2.38e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISGP 228
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPtHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-229 1.51e-43

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 152.54  E-value: 1.51e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQP-TTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:COG1008   245 VLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:COG1008   325 GLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ 404

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1321822278 160 WATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISGPI 229
Cdd:COG1008   405 VNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDlNPRELAVLAPLAALILLLGLYPQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-229 8.52e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 145.08  E-value: 8.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQP-TTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:TIGR01972 239 VILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNEL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:TIGR01972 319 GISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFK 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1321822278 160 WATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP--HTREYLLLTMHLTMTIMLMMNPQLISGPI 229
Cdd:TIGR01972 399 VNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdlNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-172 5.00e-36

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 128.59  E-value: 5.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:pfam00361 118 ALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLA-NIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:pfam00361 198 IQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277

                         170
                  ....*....|...
gi 1321822278 160 WATPTIILTGTMT 172
Cdd:pfam00361 278 ASWIFLVLAGVVG 290
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-228 2.38e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 326.77  E-value: 2.38e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISGP 228
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPtHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-227 3.51e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 282.96  E-value: 3.51e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00068  229 MILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00068  309 FSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDM-MAYPPHTREYLLLTMHLTMTIMLMMNPQLISG 227
Cdd:MTH00068  389 SNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLkTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-230 1.25e-93

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 281.78  E-value: 1.25e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00110  229 MVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00110  309 FMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSW 388

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMA-YPPHTREYLLLTMHLTMTIMLMMNPQLISGPIP 230
Cdd:MTH00110  389 SNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNiKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-227 3.29e-78

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 242.17  E-value: 3.29e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00127  230 MVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWG 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00127  310 FTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNW 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISG 227
Cdd:MTH00127  390 SPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPsHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-225 6.14e-78

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 241.38  E-value: 6.14e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00206  225 MVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWG 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00206  305 FKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSW 384

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPK-DMMAYPPHTREYLLLTMHLTMTIMLMMNPQLI 225
Cdd:MTH00206  385 SNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNhLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-226 8.40e-73

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 228.32  E-value: 8.40e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQ-PTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:MTH00044  230 MILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNW 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:MTH00044  310 GINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIIS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1321822278 160 WATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLIS 226
Cdd:MTH00044  390 WSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPiSSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-227 4.18e-62

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 199.30  E-value: 4.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00150  188 MILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWG 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00150  268 WVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISY 347

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISG 227
Cdd:MTH00150  348 SPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNElKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-225 5.03e-62

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 200.00  E-value: 5.03e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00163  217 MILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWG 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00163  297 LMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISW 376

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPPHT-REYLLLTMHLTMTIMLMMNPQLI 225
Cdd:MTH00163  377 SKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKvREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-225 5.75e-57

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 187.11  E-value: 5.75e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00205  221 MILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWG 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00205  301 MNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSS 380

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAY-PPHTREYLLLTMHLTMTIMLMMNPQLI 225
Cdd:MTH00205  381 SKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFlAISEREYYILILHWFPLNILILKLKIF 446
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-226 4.49e-55

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 182.25  E-value: 4.49e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00014  223 MILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWG 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00014  303 WQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSS 382

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYP-PHTREYLLLTMHLTMTIMLMMNPQLIS 226
Cdd:MTH00014  383 SLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNlFTPRNHTLMTLHLVPLFILILKPDLIT 449
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-229 1.51e-43

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 152.54  E-value: 1.51e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQP-TTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:COG1008   245 VLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:COG1008   325 GLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ 404

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1321822278 160 WATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISGPI 229
Cdd:COG1008   405 VNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDlNPRELAVLAPLAALILLLGLYPQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-229 8.52e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 145.08  E-value: 8.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQP-TTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:TIGR01972 239 VILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNEL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:TIGR01972 319 GISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFK 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1321822278 160 WATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP--HTREYLLLTMHLTMTIMLMMNPQLISGPI 229
Cdd:TIGR01972 399 VNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdlNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-229 9.24e-37

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 134.56  E-value: 9.24e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQP-TTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:PRK05846  247 VLLAGILLKMGAYGLLRFSLPLFPdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQL 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:PRK05846  327 GIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQ 406

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1321822278 160 WATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP-HTREYLLLTMHLTMTIMLMMNPQLISGPI 229
Cdd:PRK05846  407 VNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDlNGRELLILLPLVALLLLLGVYPKPLLDVI 477
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-172 5.00e-36

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 128.59  E-value: 5.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:pfam00361 118 ALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLA-NIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:pfam00361 198 IQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277

                         170
                  ....*....|...
gi 1321822278 160 WATPTIILTGTMT 172
Cdd:pfam00361 278 ASWIFLVLAGVVG 290
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 2-183 6.56e-34

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 126.72  E-value: 6.56e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSILQPTTNDLYYPMIA-LSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00204  246 ILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00204  326 LVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEY 405

                         170       180
                  ....*....|....*....|...
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLF 183
Cdd:MTH00204  406 SLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 2-183 1.95e-30

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 117.08  E-value: 1.95e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSILQPTTNDLYYPMI-ALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00217  243 ILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIqTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQG 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00217  323 LVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEY 402

                         170       180
                  ....*....|....*....|...
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLF 183
Cdd:MTH00217  403 SYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-182 9.95e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 106.93  E-value: 9.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRIS-SILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:MTH00226  266 VLLAGILLKLGGYGLVRLSwPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDII 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:MTH00226  346 GLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFN 425

                         170       180
                  ....*....|....*....|...
gi 1321822278 160 WATPTIILTGTMTLITATYSMHL 182
Cdd:MTH00226  426 WNPIIGVFVCSGVILSAVYSFYF 448
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-224 1.91e-24

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 100.49  E-value: 1.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYP-MIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:PRK12561  221 MILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMI---ITS 156
Cdd:PRK12561  301 GISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVflgITS 380

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278 157 AMNWATP----TIILTGTMTLITATY--SM--HLFKATQQGNLPKDMMAYPPHTREYLLLTMHLTMTIMLMMNPQL 224
Cdd:PRK12561  381 SDVYSSTfrtiTILLAAVGLILTPIYllSMlrRVFYGPRSELLPALAVVEDAKPRELFIALSLLVPIIGIGFYPKL 456
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-196 9.34e-24

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 97.67  E-value: 9.34e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYypmIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00094  187 MLLAGLLLKLGTAGFLRILGSLNFVYNNFW---IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSG 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00094  264 KLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMK 343

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1321822278 161 ATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMM 196
Cdd:MTH00094  344 NKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFN 379
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-174 5.71e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 95.98  E-value: 5.71e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSILQPTTNDLY--YPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:COG0651   242 LLSGLLTKVGVYAILRVLTLLFGADPALFlgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:COG0651   322 GLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALE 401

                         170
                  ....*....|....*....
gi 1321822278 160 ----WATPTIILTGTMTLI 174
Cdd:COG0651   402 agawLLAAVLLLSSLLTLA 420
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-155 3.69e-20

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 88.23  E-value: 3.69e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYP-MIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:PRK02546  249 MLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIIT 155
Cdd:PRK02546  329 GTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFV 404
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-200 9.98e-20

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 87.06  E-value: 9.98e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLIC-LRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:PRK06473  241 VLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGHMGYILLAAAAATPL 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMA---FPPTINLVGELMIITS 156
Cdd:PRK06473  321 SILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLNPERGLPITGSLMILGVMAsagIPGMVGFIAEFLVFRG 400

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1321822278 157 AMNWATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP 200
Cdd:PRK06473  401 SFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPR 444
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-180 7.33e-19

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 84.61  E-value: 7.33e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYP-MIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:CHL00011  247 MLLAGILLKMGAYGLIRINMELLPHAHSIFSPwLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDT 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTM-TMFWLAAiLTNMAFPPTINLVGELM----II 154
Cdd:CHL00011  327 GLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIfTMFSSFS-MASLALPGMSGFVAELIvffgII 405

                         170       180
                  ....*....|....*....|....*....
gi 1321822278 155 TSAMNWATPTIILTGTM---TLITATYSM 180
Cdd:CHL00011  406 TSQKYLLMPKILITFVMaigMILTPIYLL 434
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-200 9.52e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 78.22  E-value: 9.52e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILQPTTNDLYYPmiALSLWGSIMT---GLICLRQTDLKSLIAYSSVGHMASVIIATMIKT 77
Cdd:PRK07363  241 ILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  78 PWSLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMA---FPPTINLVGELMII 154
Cdd:PRK07363  319 QLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMAsagIPGLVGFVAEFIVF 398

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1321822278 155 TSAMNWATPTIILTGTMTLITATYSMHLFKATQQGNLPKDMMAYPP 200
Cdd:PRK07363  399 QGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNKLAYYPK 444
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-220 4.39e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 76.51  E-value: 4.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSIL--QPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPW 79
Cdd:PRK06458  251 LLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  80 SLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:PRK06458  331 GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLA 410

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1321822278 160 ----WATPTIILTGTMTLITATYSMH--LFKATQQGNLPKDMMAypphtreYLLLTMHLTMTIMLMM 220
Cdd:PRK06458  411 rgplLIAILLLLLLTLAFAALVRRVAgmVFGEPPEAVNRGDLGW-------LTTSPMFVHLVLVLVL 470
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-167 1.13e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 72.31  E-value: 1.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRI-------SSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATM 74
Cdd:PRK12667  260 MLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  75 IKTPWSLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMII 154
Cdd:PRK12667  340 IGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLF 419

                         170
                  ....*....|....*
gi 1321822278 155 TSAM--NWATPTIIL 167
Cdd:PRK12667  420 NALLesGFYLPALVL 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-178 4.40e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.52  E-value: 4.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISS----ILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKT 77
Cdd:PRK08375  239 LLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  78 PWSLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSA 157
Cdd:PRK08375  319 PLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398

                         170       180
                  ....*....|....*....|....
gi 1321822278 158 M---NWATPTIILTGtmTLITATY 178
Cdd:PRK08375  399 VeagQWLVLAVLLAS--SLLALLY 420
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 5-173 1.26e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 60.70  E-value: 1.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   5 AILLKLGGYGIMRissiLQPTTNDLYYPMIALSLWGS---IMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSL 81
Cdd:PRK12647  235 ATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGGltmLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAI 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  82 SGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNWA 161
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAP 390

                         170
                  ....*....|..
gi 1321822278 162 TPTIILTGTMTL 173
Cdd:PRK12647  391 LWSLILTVAAVL 402
PRK12650 PRK12650
DUF4040 family protein;
4-179 5.86e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 58.52  E-value: 5.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   4 AAILLKLGGYGIMRISSILQ--PTTNDLyypMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSL 81
Cdd:PRK12650  247 AAAVVKAGIYLLLRFSPVFHdvAVWNWL---LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFAL 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  82 SGAMILMVAHGITSSMMFCLANIAYERTGTRimlSMRGLQSISPTMTM-FWLAAI--LTNMAFPPTINLVGELMIITSAM 158
Cdd:PRK12650  324 TAAVVHTLAHALFKSSLFMLIGVVDHQAGTR---DIRRLGSLWRRMPFtFVSVTIaaLSMAAVPPLFGFVSKEGMLTAFL 400

                         170       180
                  ....*....|....*....|....*..
gi 1321822278 159 -----NWATPTIILTGTMT-LITATYS 179
Cdd:PRK12650  401 eapggNAGVVLLLVGAALGaVFTFAYS 427
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-174 8.28e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.08  E-value: 8.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSILqPTTNDLY------------YPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASV 69
Cdd:PRK08668  233 VLSGQLSKLGAYGFLLVLYVL-PGTKLFSefgtyrgvplfnYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYI 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  70 IIATMIKTPWSLSGAMILMVAHGITSSMMF-CLANIAYeRTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLV 148
Cdd:PRK08668  312 LVGLGLGTSLGFAGGLFHVFNHALFKGLFFlIFAAVIY-RTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFA 390

                         170       180
                  ....*....|....*....|....*.
gi 1321822278 149 GELMIITSAMNWATPtiiLTGTMTLI 174
Cdd:PRK08668  391 SKWLIFEALISKGMP---ITAFMAFF 413
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 4-183 2.54e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 53.62  E-value: 2.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   4 AAILLKLGGYGIMRISSILQPTTnDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKtpwSLSG 83
Cdd:COG1009   250 AATMVKAGVYLLARLSPLFALSP-VWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  84 AMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISP-TMTMFWLAAiLTNMAFPPTINLVGELMIITSAMNWAT 162
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPiTAITFLIGA-LSLAGIPPFAGFFSKEAILEAALEAGG 404

                         170       180
                  ....*....|....*....|....
gi 1321822278 163 PTIILTGTMTL---ITATYSMHLF 183
Cdd:COG1009   405 LGPLLLAVALLgafLTAFYSFRLF 428
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 4-185 7.22e-08

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 52.08  E-value: 7.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   4 AAILLKLGGYGIMRISSILQPTT--NDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSL 81
Cdd:PRK08377  245 SAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGV 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  82 SGAMILMVAHGITSSMMFCLAN-IAYERTGTRIMlSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:PRK08377  325 DAGVFHMINHAIVKALLFLAVGyVGITLGGTEIE-KFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSA 403

                         170       180
                  ....*....|....*....|....*.
gi 1321822278 161 A-TPTIILTGTMTLITATYSMHLFKA 185
Cdd:PRK08377  404 GyTWPVALVLGASVVEAVYYFRLIHT 429
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 2-167 2.26e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 2.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLwGSIMTGLIC---LRQTDLKSLIAYSSVGHMASVIIATMIKTP 78
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLRQSGAAEQFSNVLIGL-GIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTP 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  79 WSLSGAMILMVAHGITSSMMFCLANI---AYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIIT 155
Cdd:PRK08676  322 LALFWMLFHMLAHSLVKSGLFFSAGIlhrQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLG 401

                         170
                  ....*....|..
gi 1321822278 156 SAMNWATPTIIL 167
Cdd:PRK08676  402 GISVWLVLAVLL 413
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
33-182 2.58e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.42  E-value: 2.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  33 MIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSLSGAMILMVAHGITSSMMFCLANIAYERTGTR 112
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTS 348

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1321822278 113 IMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNWATP------TIILTGT-MTLITATYSMHL 182
Cdd:PRK06277  349 NLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPelaiimIIVSIGTfVSMMKAFYLIYL 425
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-159 3.50e-07

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 50.11  E-value: 3.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   9 KLGGYGI-MRISSILQPTTNDLYYPMIA----LSL-WGSIMTglicLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSLS 82
Cdd:COG1007   246 KIAAFAAlLRLLVEAFPGLAADWQLLLAvlavLSMtVGNLAA----LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVS 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  83 GAMILMVAHGITSSMMF-CLANIAYERTGTRIMLSMRGLQSISPtmtmfWLAAILTNMAF-----PPTINLVGELMIITS 156
Cdd:COG1007   322 AALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSP-----LLALAMTIFLLslagiPPTAGFFGKFYVFSA 396


                  ...
gi 1321822278 157 AMN 159
Cdd:COG1007   397 AVE 399
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-159 5.10e-07

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 49.43  E-value: 5.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   9 KLGGYGI-MRISSILQPTTNDLYYPMIALSLWGSIMTG-LICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSLSGAMI 86
Cdd:PRK05777  247 KIAAFAVlLRLLVVAFGGLSEDWQQVLAIIAIASMLVGnLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1321822278  87 LMVAHGITSSMMFCLANIAYERTGTRIMLS-MRGLQSISPtmtmfWLAAILTNMAF-----PPTINLVGELMIITSAMN 159
Cdd:PRK05777  327 YLLAYLFMTLGAFGVISLLRRKGGEAESISdFAGLSKRSP-----LLAAVMTIFMLslagiPPTAGFWGKFYVFEAAVE 400
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-163 2.52e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 47.66  E-value: 2.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMRISSILQPTtNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSL 81
Cdd:PRK12665  246 VFAGLLTKVGVYAIIRTHTLLFPG-GGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  82 SGAmILMVAHGIT-SSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:PRK12665  325 SGA-IYYVAHHITvQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAED 403


                  ...
gi 1321822278 161 ATP 163
Cdd:PRK12665  404 GTW 406
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 4-173 4.90e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 46.51  E-value: 4.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   4 AAILLKLGGYGIMRISSILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIK---TPWS 80
Cdd:PRK06525  246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:PRK06525  326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                         170
                  ....*....|...
gi 1321822278 161 ATPTIILTGTMTL 173
Cdd:PRK06525  406 SVEYWILLPAMVL 418
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-156 5.79e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.65  E-value: 5.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   2 VLAAILLKLGGYGIMR-ISSILQPttnDLYYPMIALSLwGSI--MTGLI-CLRQTDLKSLIAYSSVGHMASVIIATMIKT 77
Cdd:PRK08667  242 LMSGVMLKVAVYGLVRfLMDVLSP---ELWWGVLILLA-GSIsaLLGVIyALKEHDLKGLLAYSSIENIGIILMGIGLYV 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  78 PWSLSG----AMILMVA-------HGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTIN 146
Cdd:PRK08667  318 IFGVYGldtlALLALGGalfhslnHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNG 397

                         170
                  ....*....|
gi 1321822278 147 LVGELMIITS 156
Cdd:PRK08667  398 FASELLLYES 407
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-180 1.07e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   4 AAILLKLGGYGIMRissiLQPTTNDL---YYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:PRK12644  242 AAAMVKAGIYLVAR----LAPGFADVpvwRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDA 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPtmTMFWLAAI-LTNMA-FPPTINLVG-----ELMI 153
Cdd:PRK12644  318 ALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQP--VLAVVAALaAASMAgLPPLLGFVAkeaalEAVL 395

                         170       180
                  ....*....|....*....|....*....
gi 1321822278 154 ITSAMNWATPtIILTGTM--TLITATYSM 180
Cdd:PRK12644  396 HDGALGPAGP-VVLAGIVlgSILTVAYSL 423
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 42-177 1.46e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.11  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  42 IMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGL- 120
Cdd:PRK06589  292 FYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTs 371

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1321822278 121 QSISPTMTMFWLAAiLTNMAFPPTINLVGELMIITSAMNWATPTIILTGTMTLITAT 177
Cdd:PRK06589  372 KSFPLISFIISISS-LSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASS 427
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 33-168 3.26e-04

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 40.92  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  33 MIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASViiaTMIKTPWSLSGAMILMVAHGITSSMMFCLANIAYERTGTR 112
Cdd:MTH00011  150 MTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWM---TMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFN 226

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278 113 IMLSmrglqSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNWATPTIILT 168
Cdd:MTH00011  227 SKIS-----SMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLV 277
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 1-157 8.06e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 39.91  E-value: 8.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   1 MVLAAILLKLGGYGIMRISSILqptTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWS 80
Cdd:MTH00062  201 IFLSGYIMKLGLLGVYRFCGFI---FSGSFLGYLFLCCLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSS 277

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1321822278  81 LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSA 157
Cdd:MTH00062  278 INLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSS 354
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-226 9.14e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 39.70  E-value: 9.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  11 GGYGIMRIS-SILQPTTNDLYYP--MIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIA-----TMIKTPWS-- 80
Cdd:PRK08376  265 GLYALARVLfSIYGPAINLATVGwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGlgvglAALGDPAMas 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  81 -----LSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIIT 155
Cdd:PRK08376  345 ygeiaLAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE 424

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1321822278 156 S--AMNWATPTIILTGTMtLITATYSMHLFKATQQGNLPKDMMAYPPHTReyLLLTMH-LTMTIMLM-MNPQLIS 226
Cdd:PRK08376  425 SsaLFNPILGVIAMIGSV-LTLASFVKVFHTAFFGPPSEKVMNVKEPPKP--MLVPMLiLAIAIIGMgLFPWQIS 496
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 25-160 1.22e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 39.10  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  25 TTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSLSGAMILMVahgITSSMMFCLani 104
Cdd:MTH00144  139 DLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIV---SSGFLFFSL--- 212

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1321822278 105 ayeRTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMNW 160
Cdd:MTH00144  213 ---WSGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMES 265
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 6-143 2.85e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 38.33  E-value: 2.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278   6 ILLKLGGYGIMRIS-SILQPTTNDLYYPMIALSLWGSIMTGLICLRQTDLKSLIAYSSVGHM---------ASVIIATMI 75
Cdd:PRK06521  251 VMLKVAIYGILRVVfDLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIgiifvglglAMVFIAYGM 330

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  76 KTP--WSLSGAMILMVAHGITSSMMFCLANIAYERTGTRIMLSMRGLQSISPTMTMFWLAAILTNMAFPP 143
Cdd:PRK06521  331 PLLaaLALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPP 400
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 41-159 2.87e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 38.09  E-value: 2.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1321822278  41 SIMTGLI-CLRQTDLKSLIAYSSVGHMASVIIATMIKTPWSLSGAMILMVAHGITSSMMFclANIAYERTGTRIMLSMRG 119
Cdd:MTH00196  162 SLFVGAIgALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF--SIILALNVYKNLIIEFSG 239

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1321822278 120 LQSISPTMTMFWLAAILTNMAFPPTINLVGELMIITSAMN 159
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVV 279
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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