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Conserved domains on  [gi|1373463810|gb|AVT56420|]
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cytochrome b, partial (mitochondrion) [Etrumeus micropus]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 776.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALKWS 375
Cdd:MTH00131  326 WTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 776.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALKWS 375
Cdd:MTH00131  326 WTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-368 1.66e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 356.79  E-value: 1.66e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  17 PAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRG 96
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  97 LYYGSY-----LymeTWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATLT 171
Cdd:COG1290   111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 172 RFFAF-HFLFPFVIAGATILHLLFLHETGSNNPAG----LNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFSPNllG 246
Cdd:COG1290   188 RFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 247 DPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFWTLV 324
Cdd:COG1290   266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1373463810 325 ADVIILTWIGGMPVehPYVIIGQIASVLYFSLFLVLLPFAGWAE 368
Cdd:COG1290   346 VFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-201 2.99e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 265.00  E-value: 2.99e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   4 PLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 83
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  84 FFFICIYAHIGRGLYYGSY--LYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWG 161
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1373463810 162 GFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSN 201
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-199 3.58e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 246.52  E-value: 3.58e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  13 LVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  93 IGRGLYYGSYLYM--ETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATL 170
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1373463810 171 TRFFAFHFLFPFVIAGATILHLLFLHETG 199
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-325 6.76e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.20  E-value: 6.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 238 ALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTF-RPI- 315
Cdd:TIGR01156  55 AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVa 129

                          90
                  ....*....|.
gi 1373463810 316 -TQFLFWTLVA 325
Cdd:TIGR01156 130 tTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 776.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALKWS 375
Cdd:MTH00131  326 WTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
CYTB MTH00119
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 689.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00119    7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00119   87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALKW 374
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 680.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00074  167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00074  247 SPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALKW 374
Cdd:MTH00074  327 WLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 676.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALKW 374
Cdd:MTH00100  326 WLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 1-363 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 645.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00191    3 KTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHAN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00191   83 GASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00191  163 GGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLF 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00191  243 SPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVF 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPF 363
Cdd:MTH00191  323 WLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 6-360 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   6 LKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFF 85
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  86 FICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSV 165
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 166 DNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFSPNLL 245
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 246 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFWTLVA 325
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1373463810 326 DVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVL 360
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 1-370 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 597.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00034    6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00034   86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00034  166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00034  246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENK 370
Cdd:MTH00034  326 WLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375
CYTB MTH00145
cytochrome b; Provisional
 1-372 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 586.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00145    7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00145   87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00145  167 GGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00145  247 FPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVlLPFAGWAENKAL 372
Cdd:MTH00145  327 WIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-360 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 557.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00016    7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00016   87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00016  167 GGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00016  247 WPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILF 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVL 360
Cdd:MTH00016  327 WLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-373 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 518.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00022    5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00022   85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00022  165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00022  245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALK 373
Cdd:MTH00022  325 WFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-373 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 508.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   1 KTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHAN 80
Cdd:MTH00053    7 KENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  81 GASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:MTH00053   87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALF 240
Cdd:MTH00053  167 GGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 241 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLF 320
Cdd:MTH00053  247 FPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1373463810 321 WTLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLVLLPFAGWAENKALK 373
Cdd:MTH00053  327 WFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 2-359 4.92e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 489.82  E-value: 4.92e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   2 THPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANG 81
Cdd:MTH00224    8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  82 ASFFFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWG 161
Cdd:MTH00224   88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 162 GFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFS 241
Cdd:MTH00224  168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 242 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFW 321
Cdd:MTH00224  248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFW 327

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1373463810 322 TLVADVIILTWIGGMPVEHPYVIIGQIASVLYFSLFLV 359
Cdd:MTH00224  328 LLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 5-369 7.88e-139

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 400.47  E-value: 7.88e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   5 LLKIANDaLVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASF 84
Cdd:MTH00033    8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  85 FFICIYAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFS 164
Cdd:MTH00033   87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 165 VDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFS--P 242
Cdd:MTH00033  167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 243 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFWT 322
Cdd:MTH00033  247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1373463810 323 LVADVIILTWIGGMPV-EHPYVIIGQIASVLYFSLFLVLLPFAGWAEN 369
Cdd:MTH00033  327 IVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-368 1.66e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 356.79  E-value: 1.66e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  17 PAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRG 96
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  97 LYYGSY-----LymeTWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATLT 171
Cdd:COG1290   111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 172 RFFAF-HFLFPFVIAGATILHLLFLHETGSNNPAG----LNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFSPNllG 246
Cdd:COG1290   188 RFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 247 DPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFWTLV 324
Cdd:COG1290   266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1373463810 325 ADVIILTWIGGMPVehPYVIIGQIASVLYFSLFLVLLPFAGWAE 368
Cdd:COG1290   346 VFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 10-361 1.51e-118

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 347.70  E-value: 1.51e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  10 NDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICI 89
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  90 YAHIGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNAT 169
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 170 LTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDlLGFLLMLLGLTSLALFSPNLLGDPD 249
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 250 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQrglTFRPITQFLFWTLVADVII 329
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1373463810 330 LTWIGGMPVEHPYVIIGQIASVLYFSLFLVLL 361
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-201 2.99e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 265.00  E-value: 2.99e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810   4 PLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 83
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  84 FFFICIYAHIGRGLYYGSY--LYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWG 161
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1373463810 162 GFSVDNATLTRFFAFHFLFPFVIAGATILHLLFLHETGSN 201
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-359 2.78e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 268.00  E-value: 2.78e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  13 LVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAH 92
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  93 IGRGLYYGSYLYMETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATLTR 172
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 173 FFAFHFLFPFVIAGATILHLLFLHETGSNNPAGL-NSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFSPNLLGDPDNF 251
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 252 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILVLMVVPilhtSKQRGLTFRPITQFLFWTLVADVIILT 331
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                         330       340
                  ....*....|....*....|....*...
gi 1373463810 332 WIGGMPVEHPYVIIGQIASVLYFSLFLV 359
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-199 3.58e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 246.52  E-value: 3.58e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  13 LVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  93 IGRGLYYGSYLYM--ETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATL 170
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1373463810 171 TRFFAFHFLFPFVIAGATILHLLFLHETG 199
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 202-349 4.46e-53

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 172.83  E-value: 4.46e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 202 NPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 281
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1373463810 282 KLGGVLALLFSILVLMVVPILHTSKQRGlTFRPITQFLFWTLVADVIILTWIGGMPVEHPYVIIGQIA 349
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
253-353 3.04e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 161.11  E-value: 3.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 253 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFWTLVADVIILTW 332
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1373463810 333 IGGMPVEHPYVIIGQIASVLY 353
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
83-248 1.01e-37

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 133.52  E-value: 1.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  83 SFFFICIYAHIGRGLYYGSYLYME--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIW 160
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 161 GGFSVDNATLTRFFAFHFLFPFVIAGATI-LHLLFLHETGSNNPAGLNSDADKISFHPYFTYKDLLGFLLMLLGLTSLAL 239
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLPGLILALIvAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1373463810 240 FSPNLLGDP 248
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 28-172 1.82e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 118.66  E-value: 1.82e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  28 FGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRGLYYGSYLYME- 106
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1373463810 107 -TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATLTR 172
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
petB CHL00070
cytochrome b6
 19-203 7.60e-25

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 100.57  E-value: 7.60e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  19 PSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRGLY 98
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810  99 YGSYLYME--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGELVQWIWGGFSVDNATLTRFFAF 176
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1373463810 177 HFLFPFVIAGATIL-HLLFLHETGSNNP 203
Cdd:CHL00070  187 HTFVLPLLTAVFMLmHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 238-324 8.18e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.89  E-value: 8.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 238 ALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFR---P 314
Cdd:COG5679    56 AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRrpvA 130

                          90
                  ....*....|
gi 1373463810 315 ITQFLFWTLV 324
Cdd:COG5679   131 TAVFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 238-325 1.68e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.94  E-value: 1.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 238 ALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPIL-HTSKQRGLTFRPI- 315
Cdd:CHL00058   55 AVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVa 129

                          90
                  ....*....|.
gi 1373463810 316 -TQFLFWTLVA 325
Cdd:CHL00058  130 tTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-325 6.76e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.20  E-value: 6.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373463810 238 ALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTF-RPI- 315
Cdd:TIGR01156  55 AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVa 129

                          90
                  ....*....|.
gi 1373463810 316 -TQFLFWTLVA 325
Cdd:TIGR01156 130 tTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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