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Conserved domains on  [gi|1391206851|gb|AWM30308|]
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cytochrome b, partial (mitochondrion) [Danio rerio]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 726.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00131   17 ALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00131   97 HIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00131  177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00131  257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILT 336

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00131  337 WIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWL 372
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 726.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00131   17 ALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00131   97 HIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00131  177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00131  257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILT 336

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00131  337 WIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWL 372
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
6-354 1.55e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 371.05  E-value: 1.55e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   6 PTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIHIARG 85
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  86 LYYGSY-----LyneTWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:COG1290   111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFH-FLLPFIVIAMVILHLLFLHETGSNNPLG----LNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNllG 235
Cdd:COG1290   188 RFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 236 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLV 313
Cdd:COG1290   266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1391206851 314 ADMLVLTWIGGMPVehPYIIIGQMASILYFSLFLVLFPITG 354
Cdd:COG1290   346 VFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILA 384
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-190 4.15e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 4.15e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:cd00284     9 SLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSY--LYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNAT 158
Cdd:cd00284    89 HIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNAT 168

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1391206851 159 LTRFFAFHFLLPFIVIAMVILHLLFLHETGSN 190
Cdd:cd00284   169 LTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-188 2.58e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.15  E-value: 2.58e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYG--SYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATL 159
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1391206851 160 TRFFAFHFLLPFIVIAMVILHLLFLHETG 188
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 242-314 4.81e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 4.81e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAF-RPV--TQFLFWTLVA 314
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 726.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00131   17 ALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00131   97 HIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00131  177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00131  257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILT 336

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00131  337 WIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWL 372
CYTB MTH00119
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 676.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00119   18 SLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00119   98 HIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00119  178 RFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00119  258 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00119  338 WIGSQPVEHPFIIIGQLASILYFTILLILFPLLGAL 373
CYTB MTH00100
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 655.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00100   17 SFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00100   97 HVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00100  177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00100  257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLT 336

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00100  337 WIGGQPVEHPFIIIGQLASILYFLIILILMPIASLI 372
CYTB MTH00074
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 655.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00074   18 SFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00074   98 HIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00074  178 RFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00074  258 TPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILT 337

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00074  338 WIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWL 373
CYTB MTH00191
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 633.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00191   14 SLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00191   94 HIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLT 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00191  174 RFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENF 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00191  254 IPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLT 333

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPI 352
Cdd:MTH00191  334 WLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-350 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 623.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00156    7 SLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00156   87 HIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLT 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00156  167 RFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00156  247 IPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLT 326

                         330       340       350
                  ....*....|....*....|....*....|
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLF 350
Cdd:MTH00156  327 WIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-356 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 590.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00034   17 SLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00034   97 HIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00034  177 RFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00034  257 IPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILT 336

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00034  337 WIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYL 372
CYTB MTH00145
cytochrome b; Provisional
 1-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 586.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00145   18 SLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00145   98 HIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00145  178 RFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00145  258 IPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILT 337

                         330       340
                  ....*....|....*....|....*....
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVL 349
Cdd:MTH00145  338 WIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00016
cytochrome b; Validated
 1-349 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 546.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00016   18 SLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00016   98 HIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00016  178 RFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00016  258 IPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLT 337

                         330       340
                  ....*....|....*....|....*....
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLVL 349
Cdd:MTH00016  338 WIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 2-356 6.78e-180

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 503.46  E-value: 6.78e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:MTH00022   17 LVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIH 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTR 161
Cdd:MTH00022   97 IGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNR 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 162 FFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENFT 241
Cdd:MTH00022  177 FFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFI 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLTW 321
Cdd:MTH00022  257 QANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTW 336

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1391206851 322 IGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00022  337 IGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGEL 371
CYTB MTH00053
cytochrome b; Provisional
 2-356 1.20e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 497.69  E-value: 1.20e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:MTH00053   19 FIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTR 161
Cdd:MTH00053   99 IGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 162 FFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENFT 241
Cdd:MTH00053  179 FYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFK 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLTW 321
Cdd:MTH00053  259 QANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTW 338

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1391206851 322 IGGMPVEHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00053  339 IGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYL 373
CYTB MTH00224
cytochrome b; Provisional
 1-348 3.19e-171

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 481.34  E-value: 3.19e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:MTH00224   18 SLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:MTH00224   98 HVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLN 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00224  178 RFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00224  258 LMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILT 337

                         330       340
                  ....*....|....*....|....*...
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILYFSLFLV 348
Cdd:MTH00224  338 WIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 2-356 2.39e-140

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 403.16  E-value: 2.39e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTR 161
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 162 FFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLAL--FSPNLLGDPEN 239
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPEN 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 240 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVL 319
Cdd:MTH00033  255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1391206851 320 TWIGGMPV-EHPYIIIGQMASILYFSLFLVLFPITGIL 356
Cdd:MTH00033  335 TWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYL 372
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
6-354 1.55e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 371.05  E-value: 1.55e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   6 PTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIHIARG 85
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  86 LYYGSY-----LyneTWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLT 160
Cdd:COG1290   111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 161 RFFAFH-FLLPFIVIAMVILHLLFLHETGSNNPLG----LNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNllG 235
Cdd:COG1290   188 RFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 236 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLV 313
Cdd:COG1290   266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1391206851 314 ADMLVLTWIGGMPVehPYIIIGQMASILYFSLFLVLFPITG 354
Cdd:COG1290   346 VFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILA 384
CYTB MTH00086
cytochrome b; Provisional
 2-350 7.14e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 360.41  E-value: 7.14e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:MTH00086    7 VVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLH 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTR 161
Cdd:MTH00086   87 IFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKF 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 162 FFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGfVIMLFSLSLLALFSPNLLGDPENFT 241
Cdd:MTH00086  167 FFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSkqrGMAFRPVTQFLFWTLVADMLVLTW 321
Cdd:MTH00086  246 EADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSW 322

                         330       340
                  ....*....|....*....|....*....
gi 1391206851 322 IGGMPVEHPYIIIGQMASILYFSLFLVLF 350
Cdd:MTH00086  323 LGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 2-350 2.76e-93

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 282.26  E-value: 2.76e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTR 161
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 162 FFAFHFLLPFIVIAMVILHLLFLHETGSNNPLGLNPNM-DKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENF 240
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 241 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILVLMVVPilhtSKQRGMAFRPVTQFLFWTLVADMLVLT 320
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                         330       340       350
                  ....*....|....*....|....*....|
gi 1391206851 321 WIGGMPVEHPYIIIGQMASILyFSLFLVLF 350
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVL-MVLLLFIF 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-190 4.15e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 4.15e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   1 ALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYI 80
Cdd:cd00284     9 SLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  81 HIARGLYYGSY--LYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNAT 158
Cdd:cd00284    89 HIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNAT 168

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1391206851 159 LTRFFAFHFLLPFIVIAMVILHLLFLHETGSN 190
Cdd:cd00284   169 LTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-188 2.58e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.15  E-value: 2.58e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   2 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIH 81
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  82 IARGLYYG--SYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATL 159
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1391206851 160 TRFFAFHFLLPFIVIAMVILHLLFLHETG 188
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 191-338 8.00e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 166.28  E-value: 8.00e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 191 NPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 270
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1391206851 271 KLGGVLALLFSILVLMVVPILHTSKQRGMaFRPVTQFLFWTLVADMLVLTWIGGMPVEHPYIIIGQMA 338
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
242-342 1.34e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 156.48  E-value: 1.34e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLTW 321
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1391206851 322 IGGMPVEHPYIIIGQMASILY 342
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
72-237 4.91e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.01  E-value: 4.91e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  72 SFFFICLYIHIARGLYYGSYLYNE--TWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIW 149
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851 150 GGFSVDNATLTRFFAFHF-LLPFIVIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLAL 228
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1391206851 229 FSPNLLGDP 237
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 17-193 4.66e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 143.70  E-value: 4.66e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  17 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIHIARGLYYGSYLYNE- 95
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  96 -TWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFIV 173
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1391206851 174 IAMVILHLLFLHETGSNNPL 193
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 8-193 4.61e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 122.14  E-value: 4.61e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851   8 PLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIHIARGLY 87
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391206851  88 YGSYLYNE--TWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAF 165
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1391206851 166 H-FLLPFIVIAMVILHLLFLHETGSNNPL 193
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 242-314 4.33e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.79  E-value: 4.33e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPIL-HTSKQRGMAFRPV--TQFLFWTLVA 314
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVatTVFLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 242-313 1.89e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.04  E-value: 1.89e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFR---PVTQFLFWTLV 313
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRrpvATAVFLFGTLV 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 242-314 4.81e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 4.81e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391206851 242 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAF-RPV--TQFLFWTLVA 314
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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