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Conserved domains on  [gi|1464255252|gb|AXQ05887|]
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cytochrome b, partial (mitochondrion) [Notomys aquilo]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 575.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPH 267
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 575.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPH 267
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-267 9.98e-104

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 306.72  E-value: 9.98e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIIN---------HSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICR 71
Cdd:COG1290     1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  72 DVNYGWLIRYMHANGASLFFICLFLHVGRGMYYGSYTFTE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYY 224
Cdd:COG1290   161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1464255252 225 TMKDLLGAFMLIMFFMSLVLFFPDllGDPNNYTPANPLNTPPH 267
Cdd:COG1290   241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAH 281
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.89e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.18  E-value: 1.89e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  89 LFFICLFLHVGRGMYYGSY--TFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1464255252 167 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 3.67e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 260.01  E-value: 3.67e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  18 FIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASLFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  98 VGRGMYYG--SYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1464255252 176 TRFFAFHFILPFIITALVIVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 575.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPH 267
CYTB MTH00131
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 509.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00131  161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00131  241 SLALFSPNLLGDPDNFTPANPLVTPPH 267
CYTB MTH00119
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 503.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119    2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00119   82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00119  162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00119  242 TLALFSPNLLGDPENFTPANPLVTPPH 268
CYTB MTH00074
cytochrome b; Provisional
 1-267 8.51e-179

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 496.90  E-value: 8.51e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074    2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00074   82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00074  162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00074  242 LLSLFSPNLLGDPDNFTPANPLVTPPH 268
CYTB MTH00191
cytochrome b; Provisional
 4-267 5.82e-177

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 491.35  E-value: 5.82e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  84 ANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLV 243
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260
                  ....*....|....*....|....
gi 1464255252 244 LFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVH 264
CYTB MTH00156
cytochrome b; Provisional
 11-267 2.94e-175

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 486.98  E-value: 2.94e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  11 MKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASLF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  91 FICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 171 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLVLFFPDLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250
                  ....*....|....*..
gi 1464255252 251 GDPNNYTPANPLNTPPH 267
Cdd:MTH00156  241 GDPENFIPANPLVTPVH 257
CYTB MTH00145
cytochrome b; Provisional
 1-267 5.49e-165

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 461.68  E-value: 5.49e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00145  162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00145  242 FLVLFFPNLLGDPENFIPANPMVTPVH 268
CYTB MTH00034
cytochrome b; Validated
 4-267 1.13e-161

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 453.39  E-value: 1.13e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  84 ANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLV 243
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260
                  ....*....|....*....|....
gi 1464255252 244 LFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPH 267
CYTB MTH00016
cytochrome b; Validated
 1-267 3.44e-158

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 444.51  E-value: 3.44e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00016    2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  81 YMHANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00016   82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFM 240
Cdd:MTH00016  162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                         250       260
                  ....*....|....*....|....*..
gi 1464255252 241 SLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00016  242 SVVLLWPNILGDPENFIPANPLVTPTH 268
CYTB MTH00224
cytochrome b; Provisional
 4-267 9.03e-137

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 390.44  E-value: 9.03e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  84 ANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLV 243
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                         250       260
                  ....*....|....*....|....
gi 1464255252 244 LFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00224  245 LFEPNLFTDPENFLMANPLVTPIH 268
CYTB MTH00022
cytochrome b; Validated
 4-267 2.08e-134

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 384.44  E-value: 2.08e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  84 ANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLV 243
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                         250       260
                  ....*....|....*....|....
gi 1464255252 244 LFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00022  243 YFAPNLLGDPENFIQANSLVTPVH 266
CYTB MTH00053
cytochrome b; Provisional
 4-267 1.67e-129

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 372.12  E-value: 1.67e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  84 ANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLV 243
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260
                  ....*....|....*....|....
gi 1464255252 244 LFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVH 268
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-267 9.98e-104

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 306.72  E-value: 9.98e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   1 MTIIRKTHPLMKIIN---------HSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICR 71
Cdd:COG1290     1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  72 DVNYGWLIRYMHANGASLFFICLFLHVGRGMYYGSYTFTE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYY 224
Cdd:COG1290   161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1464255252 225 TMKDLLGAFMLIMFFMSLVLFFPDllGDPNNYTPANPLNTPPH 267
Cdd:COG1290   241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAH 281
CYTB MTH00033
cytochrome b; Provisional
 4-267 6.52e-100

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 296.85  E-value: 6.52e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   4 IRKTHPLMKIinHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00033    3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  84 ANGASLFFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLV 243
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                         250       260
                  ....*....|....*....|....*.
gi 1464255252 244 L--FFPDLLGDPNNYTPANPLNTPPH 267
Cdd:MTH00033  241 IepRIETLLQDPENFIQANPLVTPVH 266
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.89e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.18  E-value: 1.89e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  89 LFFICLFLHVGRGMYYGSY--TFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1464255252 167 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00086
cytochrome b; Provisional
 12-267 3.64e-93

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 278.75  E-value: 3.64e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  12 KIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASLFF 91
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  92 ICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 171
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 172 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMsLVLFFPDLLG 251
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLG 239

                         250
                  ....*....|....*.
gi 1464255252 252 DPNNYTPANPLNTPPH 267
Cdd:MTH00086  240 DPEMFIEADPMMSPVH 255
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 3.67e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 260.01  E-value: 3.67e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  18 FIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASLFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  98 VGRGMYYG--SYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1464255252 176 TRFFAFHFILPFIITALVIVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 10-265 8.64e-71

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 221.40  E-value: 8.64e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  10 LMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASL 89
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  90 FFICLFLHVGRGMYYGSYTFTETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 170 VDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGL-NSDADKIPFHPYYTMKDLLGAFMLIMFFMSLVLFFPD 248
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250
                  ....*....|....*..
gi 1464255252 249 LLGDPNNYTPANPLNTP 265
Cdd:MTH00046  241 LVLDIEAYLEADPLVTP 257
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 9.67e-49

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 158.94  E-value: 9.67e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  88 SLFFICLFLHVGRGMYYGSYTFTE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 166 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1464255252 245 FFPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 1.40e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 142.16  E-value: 1.40e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  33 FGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASLFFICLFLHVGRGMYYGSYTFTE- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 112 -TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 189
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1464255252 190 TALVIVHLLFLHETGSNNP 208
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 24-208 3.65e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 122.91  E-value: 3.65e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252  24 PSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASLFFICLFLHVGRGMY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464255252 104 YGSYTFTE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 181
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1464255252 182 H-FILPFIITALVIVHLLFLHETGSNNP 208
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-267 3.46e-17

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 76.15  E-value: 3.46e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1464255252 207 NPTGLNSDADKIPFHPYYTMKDLLGAFMLIMFFMSLVLFFPDLLGDPNNYTPANPLNTPPH 267
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLH 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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