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Conserved domains on  [gi|1471148045|gb|AXU39935|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lerista allanae]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-231 2.94e-133

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 382.62  E-value: 2.94e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 231
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 3-231 2.94e-133

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 382.62  E-value: 2.94e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 231
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-232 2.07e-45

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 157.55  E-value: 2.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:COG1008   245 VLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:COG1008   325 GLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ 404

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 232
Cdd:COG1008   405 VNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 3-232 5.70e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 140.46  E-value: 5.70e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:TIGR01972 239 VILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNEL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:TIGR01972 319 GISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFK 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLP-THITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 232
Cdd:TIGR01972 399 VNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-174 6.63e-39

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 136.29  E-value: 6.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:pfam00361 118 ALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:pfam00361 198 IQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277

                         170
                  ....*....|...
gi 1471148045 162 WSNLTITMTGLGT 174
Cdd:pfam00361 278 ASWIFLVLAGVVG 290
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 3-231 2.94e-133

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 382.62  E-value: 2.94e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 231
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 3-232 1.63e-125

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 363.08  E-value: 1.63e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00068  229 MILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00068  309 FSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNW 388

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 232
Cdd:MTH00068  389 SNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 3-231 1.15e-119

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 348.42  E-value: 1.15e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00110  229 MVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00110  309 FMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 231
Cdd:MTH00110  389 SNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 3-230 1.61e-98

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 294.56  E-value: 1.61e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00127  230 MVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWG 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00127  310 FTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNW 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMG 230
Cdd:MTH00127  390 SPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 3-228 6.84e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 277.21  E-value: 6.84e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00206  225 MVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWG 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00206  305 FKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSW 384

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLI 228
Cdd:MTH00206  385 SNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 3-229 2.19e-77

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 240.26  E-value: 2.19e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLN-PLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:MTH00044  230 MILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNW 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:MTH00044  310 GINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIIS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 229
Cdd:MTH00044  390 WSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 3-229 7.02e-68

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 215.40  E-value: 7.02e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00163  217 MILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWG 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00163  297 LMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISW 376

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 229
Cdd:MTH00163  377 SKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 3-230 5.38e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 207.00  E-value: 5.38e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00150  188 MILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWG 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00150  268 WVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISY 347

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMG 230
Cdd:MTH00150  348 SPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 3-229 8.27e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 189.42  E-value: 8.27e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00205  221 MILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWG 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00205  301 MNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSS 380

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 229
Cdd:MTH00205  381 SKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 3-228 5.24e-56

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 184.94  E-value: 5.24e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00014  223 MILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWG 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00014  303 WQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSS 382

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLI 228
Cdd:MTH00014  383 SLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-232 2.07e-45

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 157.55  E-value: 2.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:COG1008   245 VLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:COG1008   325 GLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ 404

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 232
Cdd:COG1008   405 VNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 3-232 5.70e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 140.46  E-value: 5.70e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:TIGR01972 239 VILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNEL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:TIGR01972 319 GISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFK 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLP-THITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 232
Cdd:TIGR01972 399 VNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-174 6.63e-39

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 136.29  E-value: 6.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:pfam00361 118 ALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:pfam00361 198 IQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277

                         170
                  ....*....|...
gi 1471148045 162 WSNLTITMTGLGT 174
Cdd:pfam00361 278 ASWIFLVLAGVVG 290
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 3-233 2.53e-38

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 138.80  E-value: 2.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:PRK05846  247 VLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQL 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:PRK05846  327 GIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQ 406

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPFS 233
Cdd:PRK05846  407 VNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPLLDVIH 478
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 4-231 2.60e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 135.96  E-value: 2.60e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFI-MLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00204  246 ILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00204  326 LVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEY 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 231
Cdd:MTH00204  406 SLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIIDL 474
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 4-185 1.29e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 134.02  E-value: 1.29e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00217  243 ILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQG 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00217  323 LVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEY 402

                         170       180
                  ....*....|....*....|...
gi 1471148045 163 SNLTITMTGLGTLLTATYSLYMF 185
Cdd:MTH00217  403 SYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 3-229 3.62e-34

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 127.73  E-value: 3.62e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRIT-PMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:MTH00226  266 VLLAGILLKLGGYGLVRLSwPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDII 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:MTH00226  346 GLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFN 425

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148045 162 WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 229
Cdd:MTH00226  426 WNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFIL 493
ndhD CHL00011
NADH dehydrogenase subunit 4
 3-184 2.49e-22

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 94.63  E-value: 2.49e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIML-AMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:CHL00011  247 MLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIvGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDT 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERThsRTLLLAR--GLQLILPLMTTWWLMANLMNMALPPTINITGELL----I 155
Cdd:CHL00011  327 GLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgI 404

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1471148045 156 MASTFNWSNLTITMT---GLGTLLTATYSLYM 184
Cdd:CHL00011  405 ITSQKYLLMPKILITfvmAIGMILTPIYLLSM 436
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-229 1.10e-21

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 92.79  E-value: 1.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYP-FIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:PRK12561  221 MILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHsrTLLLAR--GLQLILPLMTTWWLMANLMNMALPPTINITGELLIM--- 156
Cdd:PRK12561  301 GISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNmgGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFlgi 378

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045 157 ------ASTFNwsNLTITMTGLGTLLTATYSLYM----FLMTQRGKLPTHITQTEpTHTREHLLMALHTMPMLLLMLKPQ 226
Cdd:PRK12561  379 tssdvySSTFR--TITILLAAVGLILTPIYLLSMlrrvFYGPRSELLPALAVVED-AKPRELFIALSLLVPIIGIGFYPK 455


                  ...
gi 1471148045 227 LIM 229
Cdd:PRK12561  456 LAT 458
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-226 6.74e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 90.53  E-value: 6.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFimLAMWGIIMT---STICLRQTDLKSLIAYSSVSHMGLVIAACLIQT 79
Cdd:PRK06473  241 VLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAAT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  80 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGL---QLILPLMTTWWLMANLMNMALPPTINITGELLIM 156
Cdd:PRK06473  319 PLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVF 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045 157 ASTFNWSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQ 226
Cdd:PRK06473  399 RGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERLPALVLAVLIVVLGIQPS 468
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-189 1.11e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.44  E-value: 1.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRI-TPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:COG0651   242 LLSGLLTKVGVYAILRVlTLLFGADPALFLGTLLLvLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:COG0651   322 GLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALE 401

                         170       180
                  ....*....|....*....|....*....
gi 1471148045 162 WSNLTITMTGL-GTLLTATYSLYMFLMTQ 189
Cdd:COG0651   402 AGAWLLAAVLLlSSLLTLAYFVRIFGRAQ 430
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 3-183 3.12e-20

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 88.04  E-value: 3.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRItpmLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 82
Cdd:MTH00094  187 MLLAGLLLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSG 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:MTH00094  264 KLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMK 343

                         170       180
                  ....*....|....*....|.
gi 1471148045 163 SNLTITMTGLGTLLTATYSLY 183
Cdd:MTH00094  344 NKFSFFFIFFYFLVSFYYSLF 364
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-184 6.77e-20

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 87.84  E-value: 6.77e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYP-FIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:PRK02546  249 MLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIM----- 156
Cdd:PRK02546  329 GTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFvgfat 408

                         170       180       190
                  ....*....|....*....|....*....|
gi 1471148045 157 --ASTFNWSNLTITMTGLGTLLTATYSLYM 184
Cdd:PRK02546  409 sdAYTLPFRVVVVFLAAVGVILTPIYLLSM 438
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-180 1.74e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 71.83  E-value: 1.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRIT----PMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQT 79
Cdd:PRK08375  239 LLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  80 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGEL-LIMAS 158
Cdd:PRK08375  319 PLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWyLVVGA 398

                         170       180
                  ....*....|....*....|..
gi 1471148045 159 TFNWSNLTITMTGLGTLLTATY 180
Cdd:PRK08375  399 VEAGQWLVLAVLLASSLLALLY 420
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
3-196 1.95e-14

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 71.67  E-value: 1.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPfiMLAMWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQT 79
Cdd:PRK07363  241 ILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  80 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLI---LPLMTTWWLMANLMNMALPPTINITGELLIM 156
Cdd:PRK07363  319 QLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVF 398

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1471148045 157 ASTFNWSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTH 196
Cdd:PRK07363  399 QGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNK 438
PRK12650 PRK12650
DUF4040 family protein;
6-182 7.93e-13

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 67.38  E-value: 7.93e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLTTnMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTG 85
Cdd:PRK12650  247 AAAVVKAGIYLLLRFSPVFHDVAV-WNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  86 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTIN-ITGELLIMA------S 158
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGfVSKEGMLTAfleapgG 405

                         170       180
                  ....*....|....*....|....
gi 1471148045 159 TFNWSNLTITMtGLGTLLTATYSL 182
Cdd:PRK12650  406 NAGVVLLLVGA-ALGAVFTFAYSA 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-155 1.68e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 66.15  E-value: 1.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRI-------TPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACL 76
Cdd:PRK12667  260 MLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148045  77 IQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLI 155
Cdd:PRK12667  340 IGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-230 1.79e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 59.94  E-value: 1.79e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAM--WGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:PRK06458  251 LLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIFglLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLmTTWWLMANLMNMA-LPPTINITGELLIMASTF 160
Cdd:PRK06458  331 GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPL-TGWGLMLGALAIAgMPPFGVFISEFLILTAGL 409

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045 161 NWSNLTITMTGLGTLLTATYSLymFLMTQRgklptHITQTEPTHTREHLLMALHTMPMLLLMLKPqLIMG 230
Cdd:PRK06458  410 ARGPLLIAILLLLLLTLAFAAL--VRRVAG-----MVFGEPPEAVNRGDLGWLTTSPMFVHLVLV-LVLG 471
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 6-223 1.98e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 60.17  E-value: 1.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLnpLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQtqwSLT 84
Cdd:COG1009   250 AATMVKAGVYLLARLSPLF--ALSPVWLTVVAiIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYV 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  85 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWSN 164
Cdd:COG1009   325 AALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGG 404

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1471148045 165 LTITMTGLGTL---LTATYSLYMFLMTQRGKLPTHitqtEPTHTRE-HLLMalhTMPMLLLML 223
Cdd:COG1009   405 LGPLLLAVALLgafLTAFYSFRLFFLVFFGKPRPK----TPKHPHEsPWLM---TLPLVVLAV 460
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 7-175 1.16e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 54.93  E-value: 1.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   7 AILLKLGGYGIIRitpmLNPLTTNMYYPFIMLAMWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 83
Cdd:PRK12647  235 ATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAI 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  84 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 163
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAP 390

                         170
                  ....*....|..
gi 1471148045 164 NLTITMTGLGTL 175
Cdd:PRK12647  391 LWSLILTVAAVL 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-187 5.64e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.51  E-value: 5.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLTT-----NMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQ 80
Cdd:PRK06589  249 AVIVVKTGLFCIYKILLYIFGLSYlqrifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTP 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  81 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTF 160
Cdd:PRK06589  329 KALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAAS 408

                         170       180
                  ....*....|....*....|....*....
gi 1471148045 161 NWSN--LTITMTGLGTLLTATYSLYMFLM 187
Cdd:PRK06589  409 EQNQpwLSIIVMLVVIASSILSALYLLKI 437
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 4-101 1.11e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 51.68  E-value: 1.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRITPML--NPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 81
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL 322

                          90       100
                  ....*....|....*....|
gi 1471148045  82 SLTGAIVLMVAHGLTSSMLF 101
Cdd:PRK08676  323 ALFWMLFHMLAHSLVKSGLF 342
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 6-101 2.06e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 50.92  E-value: 2.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLT--TNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 83
Cdd:PRK08377  245 SAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGV 324

                          90
                  ....*....|....*...
gi 1471148045  84 TGAIVLMVAHGLTSSMLF 101
Cdd:PRK08377  325 DAGVFHMINHAIVKALLF 342
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 35-159 9.10e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.96  E-value: 9.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  35 FIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIVLMVAHGLTSSMLFCLANT---NYERT 111
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1471148045 112 HSRTLLlarGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMAST 159
Cdd:PRK12662  362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 6-183 4.37e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.23  E-value: 4.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLTTnMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTG 85
Cdd:PRK12644  242 AAAMVKAGIYLVARLAPGFADVPV-WRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  86 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMAnLMNMA-LPPTINITG-----ELLIMAST 159
Cdd:PRK12644  321 GLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALA-AASMAgLPPLLGFVAkeaalEAVLHDGA 399

                         170       180
                  ....*....|....*....|....*
gi 1471148045 160 FNW-SNLTITMTGLGTLLTATYSLY 183
Cdd:PRK12644  400 LGPaGPVVLAGIVLGSILTVAYSLR 424
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-182 7.13e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.10  E-value: 7.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLT 84
Cdd:PRK07691  248 GALLTKVGVYAIARTFTLFFSHDTSFTHYLILiLALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMI 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  85 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWSN 164
Cdd:PRK07691  328 GAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGF 407

                         170
                  ....*....|....*...
gi 1471148045 165 LTITMTGLGTLLTATYSL 182
Cdd:PRK07691  408 YVSGIIVLLSSLLVLYSV 425
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-186 1.09e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRITPMLNplttNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIqtqwsl 83
Cdd:PRK07234  221 LLSGVVVKAGVFPLVRCALDVP----GLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV------ 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  84 tgAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLmttwwLMANLMNMALPPTINITGELLIMASTFNWS 163
Cdd:PRK07234  291 --GGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLPWQ 363

                         170       180
                  ....*....|....*....|...
gi 1471148045 164 NLTITMTGLGTllTATYSLYMFL 186
Cdd:PRK07234  364 AIALNLAAVGT--AASFWKFIFL 384
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 4-160 1.93e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.11  E-value: 1.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRItpMLNPLTTNMYYPFIML------AMWGIIMTsticLRQTDLKSLIAYSSVSHMGL------- 70
Cdd:PRK08667  242 LMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIilmgigl 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  71 -VIAACLIQTQW---SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPT 146
Cdd:PRK08667  316 yVIFGVYGLDTLallALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPF 395

                         170
                  ....*....|....
gi 1471148045 147 INITGELLIMASTF 160
Cdd:PRK08667  396 NGFASELLLYESFF 409
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
11-97 2.50e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 44.43  E-value: 2.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  11 KLGGYGII-RITPM-LNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIV 88
Cdd:PRK05777  247 KIAAFAVLlRLLVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326


                  ....*....
gi 1471148045  89 LMVAHGLTS 97
Cdd:PRK05777  327 YLLAYLFMT 335
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 51-97 3.05e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 44.34  E-value: 3.05e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1471148045  51 LRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIVLMVAHGLTS 97
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 4-101 3.51e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.22  E-value: 3.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYG------IIRITPMLNPLTTNM-----YYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVI 72
Cdd:PRK08668  233 VLSGQLSKLGAYGfllvlyVLPGTKLFSEFGTYRgvplfNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312

                          90       100
                  ....*....|....*....|....*....
gi 1471148045  73 AACLIQTQWSLTGAIVLMVAHGLTSSMLF 101
Cdd:PRK08668  313 VGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 6-176 4.12e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 43.81  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMG---LVIAACLIQTQWS 82
Cdd:PRK06525  246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 162
Cdd:PRK06525  326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                         170
                  ....*....|....
gi 1471148045 163 SNLTITMTGLGTLL 176
Cdd:PRK06525  406 SVEYWILLPAMVLL 419
PRK12646 PRK12646
DUF4040 family protein;
6-222 5.22e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 43.98  E-value: 5.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNpLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLV-----IAACLIQTQ 80
Cdd:PRK12646  249 SATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQ 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  81 ---------WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMAnLMNMALPPTIN--I 149
Cdd:PRK12646  328 qdaiasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIA-ALSMAGVPFLNgfL 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045 150 TGELLI--MASTFNWSN----LTITMTGLG---TLLTATYSLYMFLMTQRGKLPTHITQTEPTHtrEHLLMALHTMPMLL 220
Cdd:PRK12646  407 SKEMFLdaLTQTGQLSQfsliSMIIIVFIGviaSIFTFTYALYMVKEVFWGKYDSKVFTKKNIH--EPWLFSLPSLILMV 484


                  ..
gi 1471148045 221 LM 222
Cdd:PRK12646  485 LV 486
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-177 1.81e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.01  E-value: 1.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  13 GGYGIIRI-----TPMLNPLTTNmyYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQT-------- 79
Cdd:PRK08376  265 GLYALARVlfsiyGPAINLATVG--WVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLaalgdpam 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  80 ----QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLI 155
Cdd:PRK08376  343 asygEIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                         170       180
                  ....*....|....*....|..
gi 1471148045 156 MASTFNWSNLTITMTGLGTLLT 177
Cdd:PRK08376  423 YESSALFNPILGVIAMIGSVLT 444
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 3-167 1.98e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 41.83  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   3 MVLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSticLRQTDLKSLIAYSSVSHMgLVIAACLIQTQWS 82
Cdd:MTH00062  201 IFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITA---CSELDGKRWLAFLSLSHI-LVPVLGLFVGDWS 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  83 LTG-AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 161
Cdd:MTH00062  277 SINlSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFG 356


                  ....*.
gi 1471148045 162 WSNLTI 167
Cdd:MTH00062  357 VLVYLL 362
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
6-230 3.74e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   6 AAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTI-CLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLT 84
Cdd:PRK12663  245 AALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALgALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIN 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  85 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWSN 164
Cdd:PRK12663  325 GAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGA 404

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148045 165 LTITMTGLGTLLTATYSLY-MFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMG 230
Cdd:PRK12663  405 YILLALMLITSLITMYSLFrIFFLAYWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAMGIAAEPLLN 471
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-183 3.81e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.11  E-value: 3.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   4 VLAAILLKLGGYGIIRITPMLNPLTTnmyypFIMLAMWGIIMTSTI----CLRQTDLKSLIAYSSVSHMGLVIAACLIQT 79
Cdd:PRK12665  246 VFAGLLTKVGVYAIIRTHTLLFPGGG-----LDTLLMVVALLTMVVgilgAIAQSDIKRLLSFTLVSHIGYMVFGIALST 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  80 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMAnLMNMA-LPPTINITGEL-LIMA 157
Cdd:PRK12665  321 VAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVP-ALNLGgIPPFSGFIGKVaLLEA 399

                         170       180
                  ....*....|....*....|....*.
gi 1471148045 158 STFNWSNLTITMTGlGTLLTATYSLY 183
Cdd:PRK12665  400 GAEDGTWLAWALVA-GGVVTSLLTLY 424
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
36-184 8.18e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.01  E-value: 8.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  36 IMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRT 115
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1471148045 116 LLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIM--ASTFNWSNLTITM--TGLGTLLT---ATYSLYM 184
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAqaAMQANMPELAIIMiiVSIGTFVSmmkAFYLIYL 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-229 1.33e-03

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 39.16  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   7 AILLKLGGYGIIRITPMLNPLttnmyypFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGA 86
Cdd:TIGR01770 251 AVFLRLFLYILFGFSEAWQIF-------LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAV 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045  87 IVLMVAHGLTSSMLF-CLANT-NYERTHSRTLLLARGLQLILPLMTTwwLMA-NLMNMA-LPPTINITGELLIMASTFN- 161
Cdd:TIGR01770 324 LFYIFIYALMSLGAFgVLSLLrSYKDEWIEYISDFAGLFKTNPILAI--LILiFMFSLAgIPPLAGFFGKFYVFFALLKs 401

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1471148045 162 ----WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHitqtePTHTREHLLMALHTMPMLLLMLKPQLIM 229
Cdd:TIGR01770 402 glywLAVIAVLTSVIGAFYYLRVVKVMYFDKPERRIPSN-----PQSKAQSLLLSISALFILFLGLFPSLIL 468
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-101 1.73e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 38.86  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148045   1 WLMVLAAILLKLGGYGII-RITPMLNPLttnmyypfIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQT 79
Cdd:MTH00196  128 KTTALLAIVPKLGIFSILvSIGLNVNIL--------LIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGS 199

                          90       100
                  ....*....|....*....|..
gi 1471148045  80 QWSLTGAIVLMVAHGLTSSMLF 101
Cdd:MTH00196  200 FESIQASLVYLFIYIIMSICVF 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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