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Conserved domains on  [gi|1485780795|gb|AYE89077|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Plestiodon dicei]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 598.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLII 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 161 LTGGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 241 TLTSILFINPGTMS-DPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLP 319
Cdd:MTH00111  241 TLTTILFLNPSTLNlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ..
gi 1485780795 320 PQ 321
Cdd:MTH00111  321 PQ 322
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 598.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLII 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 161 LTGGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 241 TLTSILFINPGTMS-DPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLP 319
Cdd:MTH00111  241 TLTTILFLNPSTLNlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ..
gi 1485780795 320 PQ 321
Cdd:MTH00111  321 PQ 322
NADHdh pfam00146
NADH dehydrogenase;
12-309 7.90e-121

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 349.08  E-value: 7.90e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  12 LLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLALMIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  92 APLPM--PMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTMHL 169
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 170 LTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILFIN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 250 PGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHA 309
Cdd:pfam00146 243 GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-307 4.54e-109

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 320.15  E-value: 4.54e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   4 IFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLA 83
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  84 LFLALMIWAPLPM--PMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIIL 161
Cdd:COG1005    88 FIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 162 TGGFTMHLLTTTQEHT-WLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:COG1005   168 AGSLNLSEIVEAQAGGlWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVS 247

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1485780795 241 TLTSILFI----NPGTMSDPNMFP--INLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLW 307
Cdd:COG1005   248 ALATTLFLggwlGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 598.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLII 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 161 LTGGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 241 TLTSILFINPGTMS-DPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLP 319
Cdd:MTH00111  241 TLTTILFLNPSTLNlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ..
gi 1485780795 320 PQ 321
Cdd:MTH00111  321 PQ 322
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 548.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00071    1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLII 160
Cdd:MTH00071   81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 161 LTGGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:MTH00071  161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 241 TLTSILFINPGT-MSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLP 319
Cdd:MTH00071  241 TLSTILFLGSTYnHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320


                  ..
gi 1485780795 320 PQ 321
Cdd:MTH00071  321 PM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 544.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00134    2 LSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLII 160
Cdd:MTH00134   82 MLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVII 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 161 LTGGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:MTH00134  162 FTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 241 TLTSILFINPGTM-SDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLP 319
Cdd:MTH00134  242 TLSAILFLGASHIpTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLP 321


                  ..
gi 1485780795 320 PQ 321
Cdd:MTH00134  322 PQ 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 518.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   7 HLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFL 86
Cdd:MTH00104    2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  87 ALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFT 166
Cdd:MTH00104   82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 167 MHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSIL 246
Cdd:MTH00104  162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1485780795 247 FINPG-TMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLPPQ 321
Cdd:MTH00104  242 FLGAFhNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 7-320 2.29e-157

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 442.04  E-value: 2.29e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   7 HLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFL 86
Cdd:MTH00218    4 SLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  87 ALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFT 166
Cdd:MTH00218   84 ALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 167 MHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSIL 246
Cdd:MTH00218  164 LEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVIL 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1485780795 247 FINPGTMSdpnmfpINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLPP 320
Cdd:MTH00218  244 FLGTSLTT------INLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-320 7.24e-153

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 431.32  E-value: 7.24e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   3 SIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTL 82
Cdd:MTH00040    2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  83 ALFLALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILT 162
Cdd:MTH00040   82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 163 GGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTL 242
Cdd:MTH00040  162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 243 TSILFINpGTMSDPNMFPINLM---LKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLP 319
Cdd:MTH00040  242 SVILFLG-GGSPFNEIFPINIIivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320


                  .
gi 1485780795 320 P 320
Cdd:MTH00040  321 P 321
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-306 1.09e-121

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 351.48  E-value: 1.09e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   7 HLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFL 86
Cdd:MTH00143    3 SLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  87 ALMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFT 166
Cdd:MTH00143   83 ALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 167 MHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSIL 246
Cdd:MTH00143  163 FIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVL 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 247 FINpGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFL 306
Cdd:MTH00143  243 FFG-GSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 8-317 4.00e-121

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 350.20  E-value: 4.00e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   8 LINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLA 87
Cdd:MTH00195    5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  88 LMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTM 167
Cdd:MTH00195   85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 168 HLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILF 247
Cdd:MTH00195  165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 248 INPGTMsdpnmfpINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSG 317
Cdd:MTH00195  245 LGGGGT-------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
12-309 7.90e-121

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 349.08  E-value: 7.90e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  12 LLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLALMIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  92 APLPM--PMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTMHL 169
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 170 LTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILFIN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 250 PGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHA 309
Cdd:pfam00146 243 GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 8-306 2.19e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 345.60  E-value: 2.19e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   8 LINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLA 87
Cdd:MTH00193    5 LINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  88 LMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTM 167
Cdd:MTH00193   85 LLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 168 HLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILF 247
Cdd:MTH00193  165 LDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMF 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1485780795 248 INPGTMSDpnMFPINLMLkastLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFL 306
Cdd:MTH00193  245 LGGDLLSL--LFYLKLLF----ISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 12-311 5.62e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 326.99  E-value: 5.62e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  12 LLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLALMIW 91
Cdd:MTH00225    8 LIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILW 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  92 APLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTMHLLT 171
Cdd:MTH00225   88 SLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 172 TTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILFINpg 251
Cdd:MTH00225  168 YNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFG-- 245

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 252 tmSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASF 311
Cdd:MTH00225  246 --GFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-320 8.67e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 322.07  E-value: 8.67e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00216    2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMP--MALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTL 158
Cdd:MTH00216   82 VLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 159 IILTGGFTMHLLTTTQEH-TWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIL 237
Cdd:MTH00216  162 LLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHII 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 238 MMNTLTSILFINpGTMSDPNMFPIN---LMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTT 314
Cdd:MTH00216  242 LMSCLTTILFLG-GWLSPIKYFKGGagwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320


                  ....*.
gi 1485780795 315 LSGLPP 320
Cdd:MTH00216  321 FNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-307 4.54e-109

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 320.15  E-value: 4.54e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   4 IFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLA 83
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  84 LFLALMIWAPLPM--PMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIIL 161
Cdd:COG1005    88 FIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 162 TGGFTMHLLTTTQEHT-WLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 240
Cdd:COG1005   168 AGSLNLSEIVEAQAGGlWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVS 247

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1485780795 241 TLTSILFI----NPGTMSDPNMFP--INLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLW 307
Cdd:COG1005   248 ALATTLFLggwlGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 8-320 2.49e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 315.90  E-value: 2.49e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   8 LINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLA 87
Cdd:MTH00054    5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  88 LMIWAPLPM--PMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGF 165
Cdd:MTH00054   85 FIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 166 TMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSI 245
Cdd:MTH00054  165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1485780795 246 LFI----NPGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHASFPTTLSGLPP 320
Cdd:MTH00054  245 LFLggwlVISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
8-309 7.33e-103

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 304.42  E-value: 7.33e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   8 LINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLA 87
Cdd:PRK06076   13 LLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  88 LMIWAPLPM--PMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGF 165
Cdd:PRK06076   93 FLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 166 TMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSI 245
Cdd:PRK06076  173 NLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITT 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1485780795 246 LFIN----PGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLWHA 309
Cdd:PRK06076  253 LFLGgwlpPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTA 320
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-320 3.93e-94

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 283.06  E-value: 3.93e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   1 MHSIFTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITP 80
Cdd:MTH00029    3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 TLALFLALMIWAPLPMPMA--LADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTL 158
Cdd:MTH00029   83 IISFTLAILAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 159 IILTGGFTMHLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILM 238
Cdd:MTH00029  163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 239 MNTLTSILFI-----------------NPGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLT 301
Cdd:MTH00029  243 MSCMMTIFFLggwlspldgiptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322

                         330
                  ....*....|....*....
gi 1485780795 302 LALFLWHASFPTTLSGLPP 320
Cdd:MTH00029  323 LGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 9-306 1.96e-90

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 272.42  E-value: 1.96e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   9 INPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLAL 88
Cdd:MTH00010    7 ISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  89 MIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTMH 168
Cdd:MTH00010   87 LLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 169 LLTTTQeHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILFI 248
Cdd:MTH00010  167 KIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1485780795 249 npGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFL 306
Cdd:MTH00010  246 --SFIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-306 2.11e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 212.45  E-value: 2.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  12 LLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLALMIW 91
Cdd:MTH00090    3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  92 APLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTMhllt 171
Cdd:MTH00090   83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSF---- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 172 ttqeHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILFINpg 251
Cdd:MTH00090  159 ----VSSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK-- 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1485780795 252 tmsdPNMFPINLMLkastltALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFL 306
Cdd:MTH00090  233 ----FSFLMLFLIF------SLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLG 277
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 8-306 1.21e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 177.42  E-value: 1.21e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   8 LINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLALFLA 87
Cdd:MTH00058    4 LVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  88 LMIWAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGFTm 167
Cdd:MTH00058   84 VFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS- 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 168 hLLTTTQEHTWLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTSILF 247
Cdd:MTH00058  163 -LVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLF 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1485780795 248 INPGTMSdpNMFPINLMlkastltaLFLWARASYPRFRYDQLMHLLWKNFLPLTLALFL 306
Cdd:MTH00058  242 FGGGFVS--IMLLFHLL--------FFMWARATLPRVRYDYFVNFFWEYCLVLLILSLF 290
ndhA CHL00032
NADH dehydrogenase subunit 1
 12-311 2.20e-52

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 176.30  E-value: 2.20e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  12 LLYIIPILVAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADGVKLFIKEPVRPSTSSPTLFIITPTLA---LFLAL 88
Cdd:CHL00032   34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisILLSY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  89 MIwAPLPMPMALADMNLGLLFMLALSSMAVYSILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTLIILTGGF-TM 167
Cdd:CHL00032  114 LV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLsTV 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 168 HLLTTTQEHTWLALPSW--PL-MMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTS 244
Cdd:CHL00032  193 DIVEAQSKYGFWGWNLWrqPIgFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVT 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 245 ILFINPGTMSDP-----NMFPINLMLK--------ASTL--TALFLW----ARASYPRFRYDQLMHLLWKNFLPLTLALF 305
Cdd:CHL00032  273 VLYLGGWNLSIPyifipELFEINKTGGvfgttigiFITLakTYLFLFisitTRWTLPRLRMDQLLNLGWKFLLPISLGNL 352


                  ....*.
gi 1485780795 306 LWHASF 311
Cdd:CHL00032  353 LLTTSF 358
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
5-307 2.49e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 116.44  E-value: 2.49e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795   5 FTHLINPLLYIIPILVAVAFLTLLERKVLGYMQLRKGPnivgpcGLLQPIADGVKLFIKEPVRPSTSSPtLFIITP---- 80
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPyval 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795  81 --TLALFLALMIWAPLPMPMALADMnLGLLFMLALSSMAvysILWSGWASNSKYPLIGALRAVAQTISYEVTLAVILLTL 158
Cdd:COG0650    74 aaMLLAALLVPVLTTGPPLSFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFAL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1485780795 159 IILTGGFTMHLLTTTQEHT---WLALPSWPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYAN 235
Cdd:COG0650   150 ALLAGSTSLSDIVAYQAAHgplLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALK 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1485780795 236 ILMMNTLTSILFINPGTMSDPNMFPINLMLKASTLTALFLWARASYPRFRYDQLMHLLWKNFLPLTLALFLW 307
Cdd:COG0650   230 LFVLLSLFVNLFLPWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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