|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
2-317 |
7.21e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 323.70 E-value: 7.21e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 2 ILSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTW 81
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 82 DISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSLT 161
Cdd:MTH00112 85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALM 241
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1488099241 242 MT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRLQPK 317
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-296 |
2.83e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 85.17 E-value: 2.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 4 SLMLTSLaVGTITTMSSTHWLMAWAGLELNTLSIIPIIT-KHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWD 82
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQ------------PACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MA----LK*LAHSSL 146
Cdd:COG1007 185 LAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 147 NP---TILM*LGLLSSLTGG*GGL*QT*VRK*MALSSIA-------------*LG*KATIM*Lnpsi*mlnl*LYL*MTT 210
Cdd:COG1007 265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAhagylllglaagtPLGVSAALFYL---------LAYLFMNL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 211 TTF*****TTSKTI*GLT*S-----STLSP*tLALMMT*LM-SLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSAL 284
Cdd:COG1007 336 GAFAVILLLSRKGGEAEEIEdlaglARRSPL-LALAMTIFLlSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSV 414
|
330
....*....|..
gi 1488099241 285 LSLFFYLRLSYV 296
Cdd:COG1007 415 ISAYYYLRVVKA 426
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
4-293 |
3.74e-17 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 81.92 E-value: 3.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 4 SLMLTSLaVGTITTMSSTHWLMAWAGLELNTLSIIPIIT-KHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWD 82
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQPACTMLT------------MALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA----*MALK*LAHSSL 146
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavFLRLFLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 147 NPT---ILM*LGLLSSLTGG*GGL*QT*VRK*MALSSIA-------------*LG*KATIM*LNPSI*MLNL*LYL*MTT 210
Cdd:TIGR01770 265 SEAwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIShvgyiligllagtLEGIKAVLFYIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 211 TTF*****TTSKTI*GLT*SSTLSP*TLALMMt*lMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFY 290
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKTNPILAILILIFM---FSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
...
gi 1488099241 291 LRL 293
Cdd:TIGR01770 422 LRV 424
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
20-269 |
1.82e-16 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 78.51 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 20 STHWLMAWAGLELNTLSIIPIITKHHY-PRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWDISQLTNQPACT----- 93
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 94 ------MLTMALAMKLGLAP*HFWLPEVLQGAPLS-*ALLI*TWQKLA*MAL---K*LAHSSLN--PTILM*LGLLSSLT 161
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLirrSLLYLPSSPfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI----*MLNL*LYL*MTTTTF*****-----TTSKTI*GLT*SST 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 1488099241 233 LSP*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVN 269
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
2-317 |
7.21e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 323.70 E-value: 7.21e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 2 ILSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTW 81
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 82 DISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSLT 161
Cdd:MTH00112 85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALM 241
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1488099241 242 MT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRLQPK 317
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
2-322 |
1.14e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 313.28 E-value: 1.14e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 2 ILSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTW 81
Cdd:MTH00135 5 VLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 82 DISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALk*LAHSSLNPTILM*LGLLSSLT 161
Cdd:MTH00135 85 DIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFAL-ILQIAPTNPTLLITLGLTSTLV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALM 241
Cdd:MTH00135 164 GGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALT 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 242 MT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRLQPKMITA 321
Cdd:MTH00135 244 PLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
|
.
gi 1488099241 322 P 322
Cdd:MTH00135 324 P 324
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
3-322 |
2.00e-101 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 302.23 E-value: 2.00e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 3 LSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWD 82
Cdd:MTH00070 6 LSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSLTG 162
Cdd:MTH00070 86 IMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 163 G*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALMM 242
Cdd:MTH00070 166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMM 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 243 T*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRL--QPKMIT 320
Cdd:MTH00070 246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFknKTNNLL 325
|
..
gi 1488099241 321 AP 322
Cdd:MTH00070 326 SL 327
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
2-316 |
2.61e-94 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 284.05 E-value: 2.61e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 2 ILSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTW 81
Cdd:MTH00105 5 ILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 82 DISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSLT 161
Cdd:MTH00105 85 TITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALM 241
Cdd:MTH00105 165 GGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLI 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488099241 242 MT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRLQP 316
Cdd:MTH00105 245 LLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEN 319
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-319 |
3.29e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 232.55 E-value: 3.29e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 1 VILSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGT 80
Cdd:MTH00200 4 LILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 81 WDISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSL 160
Cdd:MTH00200 84 WGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 161 TGG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLAL 240
Cdd:MTH00200 164 VGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSML 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488099241 241 MMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRLQPKMI 319
Cdd:MTH00200 244 LGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
2-313 |
6.12e-70 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 221.73 E-value: 6.12e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 2 ILSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTW 81
Cdd:MTH00041 5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 82 DISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSLT 161
Cdd:MTH00041 85 SINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALM 241
Cdd:MTH00041 165 GGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLF 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488099241 242 MT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWR 313
Cdd:MTH00041 245 ILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWR 316
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
5-306 |
1.71e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 155.37 E-value: 1.71e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 5 LMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWStgtwdiS 84
Cdd:MTH00160 9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN------L 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 85 QLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*Malk*LAHSSLNPTILM*LGLLSSLTGG* 164
Cdd:MTH00160 83 MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPL---ILLSYLINNNFIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 165 GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALMMT* 244
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488099241 245 LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTT 306
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
2-314 |
2.43e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 149.65 E-value: 2.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 2 ILSLMLtsLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTW 81
Cdd:MTH00144 7 LLFLFL--MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 82 DISqltnqpacTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNP-TILM*LGLLSSL 160
Cdd:MTH00144 85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 161 TGG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLAL 240
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGLS 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1488099241 241 MMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAHPSTTNTHFKWRL 314
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
3-293 |
5.33e-35 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 130.28 E-value: 5.33e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 3 LSLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTnawstgTWD 82
Cdd:MTH00011 8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALK*LAHSSLNPTILM*LGLLSSLTG 162
Cdd:MTH00011 82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 163 G*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALMM 242
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1488099241 243 T*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRL 293
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
4-302 |
6.14e-31 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 119.01 E-value: 6.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 4 SLMLTSLAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWDI 83
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 84 SqltnqpaCTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALk*LAHSSLNPTILM*LGLLSSLTGG 163
Cdd:MTH00197 81 S-------VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLI--LAFNSSSFMGLLICSVLSSLIGG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 164 *GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP*TLALMMT 243
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1488099241 244 *LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSYVSALTAH 302
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSN 290
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-296 |
2.83e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 85.17 E-value: 2.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 4 SLMLTSLaVGTITTMSSTHWLMAWAGLELNTLSIIPIIT-KHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWD 82
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQ------------PACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MA----LK*LAHSSL 146
Cdd:COG1007 185 LAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 147 NP---TILM*LGLLSSLTGG*GGL*QT*VRK*MALSSIA-------------*LG*KATIM*Lnpsi*mlnl*LYL*MTT 210
Cdd:COG1007 265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAhagylllglaagtPLGVSAALFYL---------LAYLFMNL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 211 TTF*****TTSKTI*GLT*S-----STLSP*tLALMMT*LM-SLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSAL 284
Cdd:COG1007 336 GAFAVILLLSRKGGEAEEIEdlaglARRSPL-LALAMTIFLlSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSV 414
|
330
....*....|..
gi 1488099241 285 LSLFFYLRLSYV 296
Cdd:COG1007 415 ISAYYYLRVVKA 426
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
10-293 |
2.11e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 82.00 E-value: 2.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 10 LAVGTITTMSSTHWLMAWAGLELNTLSI-IPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWDIS--QL 86
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyiNL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 87 TNQPACTM-----------LTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALk*LAHSSLNPTILM*LG 155
Cdd:MTH00196 82 VLNSGQSFssvsvpigyllIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSI--LVSIGLNVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 156 LLSSLTGG*GGL*QT*VRK*MALSSIA*LG------*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT* 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlwgiEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488099241 230 SSTLSP*-TLALMMT*LmSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRL 293
Cdd:MTH00196 240 LSRRLPIlAITLALTFL-SIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
4-293 |
3.74e-17 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 81.92 E-value: 3.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 4 SLMLTSLaVGTITTMSSTHWLMAWAGLELNTLSIIPIIT-KHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWD 82
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQPACTMLT------------MALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA----*MALK*LAHSSL 146
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavFLRLFLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 147 NPT---ILM*LGLLSSLTGG*GGL*QT*VRK*MALSSIA-------------*LG*KATIM*LNPSI*MLNL*LYL*MTT 210
Cdd:TIGR01770 265 SEAwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIShvgyiligllagtLEGIKAVLFYIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 211 TTF*****TTSKTI*GLT*SSTLSP*TLALMMt*lMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFY 290
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKTNPILAILILIFM---FSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
...
gi 1488099241 291 LRL 293
Cdd:TIGR01770 422 LRV 424
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
20-269 |
1.82e-16 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 78.51 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 20 STHWLMAWAGLELNTLSIIPIITKHHY-PRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWDISQLTNQPACT----- 93
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 94 ------MLTMALAMKLGLAP*HFWLPEVLQGAPLS-*ALLI*TWQKLA*MAL---K*LAHSSLN--PTILM*LGLLSSLT 161
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLirrSLLYLPSSPfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 162 GG*GGL*QT*VRK*MALSSIA*LG*KATIM*LNPSI----*MLNL*LYL*MTTTTF*****-----TTSKTI*GLT*SST 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 1488099241 233 LSP*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVN 269
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
4-293 |
4.90e-16 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 78.71 E-value: 4.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 4 SLMLTSLaVGTITTMSSTHWLMAWAGLELNTLSIIPIITKH-HYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWD 82
Cdd:PRK05777 107 LLVLFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 83 ISQLTNQPACT------------MLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MA----LK*LAHSSL 146
Cdd:PRK05777 186 FAGIAKALADGsgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFGGL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 147 NPT---ILM*LGLLSSLTGG*GGL*QT*VRK*MALSSIA*LG-*KATIM*LNP---SI*MLNL*LYL*MTTTTF*****T 219
Cdd:PRK05777 266 SEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGyLLVGLAAGTAegySAVLFYLLAYLFMTLGAFGVISLL 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 220 TSK-----TI*GLT*SSTLSP*TLALMMT*LM-SLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRL 293
Cdd:PRK05777 346 RRKggeaeSISDFAGLSKRSP-LLAAVMTIFMlSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
10-293 |
2.16e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 70.82 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 10 LAVGTITTMSSTHWLMAWAGLELNTLSI-IPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWDI----S 84
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 85 QLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALk*LAHSSLNPTILM*LGLLSSLTGG* 164
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSI--LVQIGPVTNVVLICAVLSIIYGAI 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 165 GGL*QT*VRK*MALSSIA*LG------*KATIM*LNPSI*MLNL*LYL*MTTTTF*****TTSKTI*GLT*SSTLSP--- 235
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGfilfgvAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNPvia 343
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1488099241 236 *TLALmmt*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRL 293
Cdd:MTH00199 344 LTLAL---TFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
27-293 |
1.04e-08 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 56.31 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 27 WAGLELNTLSIIPIITKHHYPRSTEATTKYFLTQAAASAMLLFASTTNAWSTGTWDISQLTN----------QPACTMLT 96
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 97 MALAMKLGLAP*HFWLPEVLQGAP------LS*AL-------LI*TWQKLA*MALK*LAHsslnpTILM*LGLLSSLTGG 163
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDAYPAAPspvsalLSGLLtkvgvyaILRVLTLLFGADPALFLG-----TLLLVLGLLTMLVGA 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 164 *GGL*QT*VRK*MALSSIA-------------*LG*KATIM-*LNPSI*MLNL*lyl*mttttF----*****TTSKTI* 225
Cdd:COG0651 288 LGALAQRDLKRLLAYSSVSqigyillglglgtPLGLAGALFhLLNHALAKALL----------FlaagAIERATGTRDLD 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1488099241 226 GLT*SSTLSP*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRL 293
Cdd:COG0651 358 KLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
10-293 |
2.55e-06 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 49.09 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 10 LAVGTITTMSSTHWLMAWAGLELNTLSIIPIITKHHYPRST---------EATTKYFLTQAAASAMLLFAS------TTN 74
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCalyfgfTGN 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 75 AWSTGT--------WDISQLTNQPACTMLTMALAMKLGLAP*HFWLPEVLQGAPLS*ALLI*TWQKLA*MALk*LAHSSL 146
Cdd:MTH00198 277 EGMLGTilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYIL--LTSLVI 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 147 NPTILM*LGLLSSLTGG*GGL*QT*VRK*MALSSIA*LG------*KATIM*LNPSI*MLNL*LYL*MTTTT-------F 213
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGfiligvSAGTYESLQASWTYAVTYLVSALASFTvictleeF 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 214 *****TTS------------KTI*GLT*SSTLSP*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIAL 281
Cdd:MTH00198 435 GTRTPTSRqrdgsfgnynlvRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYL 514
|
330
....*....|....*....
gi 1488099241 282 SALL-------SLFFYLRL 293
Cdd:MTH00198 515 VALFaiictciSAFYYIRI 533
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
235-295 |
1.81e-04 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 43.06 E-value: 1.81e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1488099241 235 P*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSY 295
Cdd:PRK08668 367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
48-138 |
4.35e-04 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 41.91 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488099241 48 RSTEATTKYFLTQAAASAMLLFA-STTNAWSTGTWDIS---------QLTNQPAC----TMLTMALAMKLGLAP*HFWLP 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELQeivnglintQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238
|
90 100
....*....|....*....|....*
gi 1488099241 114 EVLQGAPLS*ALLI*TWQKLA*MAL 138
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASAL 263
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
235-286 |
7.06e-03 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 38.33 E-value: 7.06e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488099241 235 P*TLALMMT*LMSLGGLPPLTGFMPKWLILQEL----------VNHNFPAAAMMIALSALLS 286
Cdd:PRK06521 382 PWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLlsspglpqwgLKLAVPIAAAMLALTAALA 443
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
235-300 |
7.73e-03 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 38.13 E-value: 7.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1488099241 235 P*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIA-LSALLSLFFYLRLSYVSALT 300
Cdd:MTH00020 367 PLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGcFSALLTAFYSIRLIYLTFLS 433
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
235-295 |
9.04e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 37.94 E-value: 9.04e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1488099241 235 P*TLALMMT*LMSLGGLPPLTGFMPKWLILQELVNHNFPAAAMMIALSALLSLFFYLRLSY 295
Cdd:PRK08375 366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| |
