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Conserved domains on  [gi|1491570386|gb|AYJ76980|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Leptocoma brasiliana brasiliana]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-341 1.56e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.07  E-value: 1.56e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   1 QAKLIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ 80
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  81 WDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAA 160
Cdd:MTH00112   84 WDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 161 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAM 240
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 241 LLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNP 320
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNT 323

                         330       340
                  ....*....|....*....|.
gi 1491570386 321 MIAILTTLSIVLLPIAPMIYT 341
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPMILT 344
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-341 1.56e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.07  E-value: 1.56e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   1 QAKLIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ 80
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  81 WDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAA 160
Cdd:MTH00112   84 WDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 161 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAM 240
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 241 LLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNP 320
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNT 323

                         330       340
                  ....*....|....*....|.
gi 1491570386 321 MIAILTTLSIVLLPIAPMIYT 341
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPMILT 344
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-267 2.40e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.67  E-value: 2.40e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  11 ILGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQLTH 88
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  89 PIS------------CLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKL----PPLTLLYMTSPSLNP---T 149
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 150 VLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILAYDPKLTLLNFYL--YSLMTAAVFLTLNAAK----- 220
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1491570386 221 VLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQEL 267
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 6.69e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 6.69e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  20 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  88 HPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTVMKLPPLTLLYMTSPSLNPT-----VLTTMAILSAAL 161
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 162 GGWMGLNQTQIRKIMAFSSISHLGWMAIILA----YDPKLTLLNFYLYSLMTAAVFLTLNAA-----KVLKLSTLMTAWT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1491570386 233 KTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-272 8.41e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 8.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  11 ILGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 89
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  90 ------------ISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLP---PLTLLYMTSPSLNPTVLTTM 154
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 155 ----AILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSLMTAAVFLTLNAAKVLK--- 223
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1491570386 224 ---LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDM 272
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-341 1.56e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.07  E-value: 1.56e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   1 QAKLIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ 80
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  81 WDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAA 160
Cdd:MTH00112   84 WDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 161 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAM 240
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 241 LLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNP 320
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNT 323

                         330       340
                  ....*....|....*....|.
gi 1491570386 321 MIAILTTLSIVLLPIAPMIYT 341
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPMILT 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 5-339 7.85e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 384.66  E-value: 7.85e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   5 IFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT 84
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  85 QLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAALGGW 164
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 165 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLLLT 244
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 245 LLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNPMIAI 324
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*
gi 1491570386 325 LTTLSIVLLPIAPMI 339
Cdd:MTH00070  328 TIILSLMLLPITPTI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-341 4.38e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.00  E-value: 4.38e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   5 IFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT 84
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  85 QLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSlNPTVLTTMAILSAALGGW 164
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 165 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLLLT 244
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 245 LLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNPM-IA 323
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLA 326

                         330
                  ....*....|....*...
gi 1491570386 324 ILTTLSIVLLPIAPMIYT 341
Cdd:MTH00135  327 ISTTATLMLLPLTPAILA 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 4-341 1.70e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.97  E-value: 1.70e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   4 LIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 83
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  84 TQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAALGG 163
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 164 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLLL 243
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 244 TLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TNKPTNPM 321
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTL 325

                         330       340
                  ....*....|....*....|
gi 1491570386 322 IAILTTLSIVLLPIAPMIYT 341
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 4-341 4.21e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 296.49  E-value: 4.21e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   4 LIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 83
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  84 TQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAALGG 163
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 164 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLLL 243
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 244 TLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNPMIA 323
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330
                  ....*....|....*...
gi 1491570386 324 ILTTLSIVLLPIAPMIYT 341
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 4-333 1.24e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.77  E-value: 1.24e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   4 LIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 83
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  84 TQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAALGG 163
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 164 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLLL 243
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 244 TLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNPMIA 323
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                         330
                  ....*....|
gi 1491570386 324 ILTTLSIVLL 333
Cdd:MTH00041  327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-340 1.64e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.57  E-value: 1.64e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   3 KLIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWhtgqwd 82
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  83 ITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTspsLNPTVLTTMAILSAALG 162
Cdd:MTH00160   81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 163 GWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLL 242
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 243 LTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTNKpTNPMI 322
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNK-FSLIL 315

                         330
                  ....*....|....*...
gi 1491570386 323 AILTTLSIVLLPIAPMIY 340
Cdd:MTH00160  316 NFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-272 7.46e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.90  E-value: 7.46e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   2 AKLIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 81
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  82 DITqlthpiscLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNP-TVLTTMAILSAA 160
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 161 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLmtAWTKTPSLNAM 240
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1491570386 241 LLLTLLSLAG-LPPLTGFFPKWLIIQELTKQDM 272
Cdd:MTH00144  235 SIISLLLSLGgLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 4-272 6.21e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.48  E-value: 6.21e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   4 LIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 83
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  84 TQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAILSAALGG 163
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 164 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTLMTAWTKTPSLNAMLLL 243
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1491570386 244 TLLSLAGLPPLTGFFPKWLIIQELTKQDM 272
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-339 1.48e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.42  E-value: 1.48e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   5 IFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 84
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  85 qLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLymTSPSLNPTVLTTMAILSAALGGW 164
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 165 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTlMTAWTKTPSLNAMLLLT 244
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 245 LLSLAG-LPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTItlppHTTNHMKQWRTNKPTNPMIA 323
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                         330
                  ....*....|....*.
gi 1491570386 324 ILTTLSIVLLPIAPMI 339
Cdd:MTH00197  308 ILLMMMLPLLMIFTMI 323
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-267 2.40e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.67  E-value: 2.40e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  11 ILGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQLTH 88
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  89 PIS------------CLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKL----PPLTLLYMTSPSLNP---T 149
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 150 VLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILAYDPKLTLLNFYL--YSLMTAAVFLTLNAAK----- 220
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1491570386 221 VLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQEL 267
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 6.69e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 6.69e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  20 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  88 HPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTVMKLPPLTLLYMTSPSLNPT-----VLTTMAILSAAL 161
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 162 GGWMGLNQTQIRKIMAFSSISHLGWMAIILA----YDPKLTLLNFYLYSLMTAAVFLTLNAA-----KVLKLSTLMTAWT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1491570386 233 KTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 10-264 3.68e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 103.96  E-value: 3.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  10 LILGTTITVSSNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 75
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  76 WHTGQWDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNptVLTTMA 155
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 156 ILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDP----KLTLLNFYLYSLMTAAVFLTLNAAKVLK--LSTLMT 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1491570386 230 AWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLII 264
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-264 4.49e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 102.02  E-value: 4.49e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  10 LILGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI----T 84
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  85 QLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNptVLTTMAILSAALGGW 164
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 165 MGLNQTQIRKIMAFSSISHLGWMAIILAYDP----KLTLLNFYLYSLMTAAVF---LTLNAAKVLkLSTLMTAWTKTPSL 237
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 1491570386 238 NAMLLLTLLSLAGLPPLTGFFPKWLII 264
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
11-278 9.33e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 101.44  E-value: 9.33e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  11 ILGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 89
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  90 IS------------CLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKL----PPLTLLYMTSPSLNPT---V 150
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 151 LTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTL--LNFYL--YSLMTAAVFLTLNA-AKVLKLS 225
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLlRRKGGEA 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1491570386 226 TLMTAWT----KTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATV 278
Cdd:PRK05777  353 ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-272 8.41e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 8.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  11 ILGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 89
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  90 ------------ISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLP---PLTLLYMTSPSLNPTVLTTM 154
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 155 ----AILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSLMTAAVFLTLNAAKVLK--- 223
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1491570386 224 ---LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDM 272
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-280 9.35e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 80.58  E-value: 9.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  10 LILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 89
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  90 IS----------CLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVM-KLPP------LTLLYMTSPSLNP-TVL 151
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 152 TTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SLMTAAVFLT----LNAAKVLK 223
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1491570386 224 LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIA 280
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 12-189 4.13e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.97  E-value: 4.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  12 LGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFSSMTNAWHTGQ-- 80
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  81 ------------WDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLymTSPSLNP 148
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1491570386 149 TVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 189
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 4-260 3.33e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.95  E-value: 3.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386   4 LIFTTSLILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSSM--TNAWHT 78
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  79 GQWDI------TQLTHPISCLL----LTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTL----LYMTSP 144
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 145 SLNP---TVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI-ILAYDPK------LTLLNFYLyslmtaavFL 214
Cdd:CHL00049  274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYI--------FM 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1491570386 215 TLNAAKVLKLSTLMTA----------WTKTPSLNAMLLLTLLSLAGLPPLTGFFPK 260
Cdd:CHL00049  346 NLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
47-260 2.51e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 64.30  E-value: 2.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  47 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLTH-------------PISCLLLTSAISMKLGLVPFHFWF 112
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspslglALALVFVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 113 PEVLQGSPLITGLLLSTVMKLP----PLTLLYMTSPSLNP---TVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 185
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 186 WMAIILAYDPKLTLLNFYLYslMTAAVFLTLNAAKVLKLSTLMTA----------WTKTPSLNAMLLLTLLSLAGLPPLT 255
Cdd:PRK02504  314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391


                  ....*
gi 1491570386 256 GFFPK 260
Cdd:PRK02504  392 GFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-263 2.47e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 61.27  E-value: 2.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  30 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSmtnAWHTGQWDI-------------TQLTHPISCLLL 95
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  96 TSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLstVMKLPPLTLLY-----MTSPSLNPT----VLTTMAILSAALGGWM 165
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLL--VIKQAGLYALArvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAM 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 166 GLNQTQIRKIMAFSSISHLGWMAI-----ILAY-DPKLTLLNFylySLMTAAVFLTLNAAkVLKLSTLMTAW-----TKT 234
Cdd:PRK08376  305 AVVQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMASYGE---IALAGGIYHIVNHA-LYKALLFLTAGaviyeTGT 380

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1491570386 235 PSLNAML-------------LLTLLSLAGLPPLTGFFPKWLI 263
Cdd:PRK08376  381 RNLNELGglartmpkttiafLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 46-192 3.24e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.87  E-value: 3.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  46 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLT-HPIS-------CLLLTSAISMKLGLVPFHFWFPEV 115
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 116 LQGSPLITGLLLSTVM-KLP-------PLTLLYMTSPSLNPTVLTtMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 187
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ....*
gi 1491570386 188 AIILA 192
Cdd:COG1008   315 LLGIF 319
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 47-189 1.58e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  47 PRAIEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-THPISC-------LLLTSAISMKLGLVPFHFWFPEV-- 115
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 116 ---LQGSPLITGLLLstvmKLPP-------LTLLYMTSPSLNPtVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 185
Cdd:TIGR01972 232 eapTAGSVILAGVLL----KMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMG 306


                  ....
gi 1491570386 186 WMAI 189
Cdd:TIGR01972 307 FVLL 310
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 292-337 5.75e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 45.71  E-value: 5.75e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1491570386 292 RLAYCTTITLPPHTTNHMKQWRTNKPTN-PMIAILTTLSIVLLPIAP 337
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 18-280 8.64e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.54  E-value: 8.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  18 VSSNHWVLAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH-------- 88
Cdd:COG1009   128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilss 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  89 ----PISCLLLTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSP--SLNPTVLTTMAILSAA-- 160
Cdd:COG1009   208 plltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAIta 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 161 -LGGWMGLNQTQIRKIMAFSSISHLGWMAIILAydpkltllnfylYSLMTAAVFLTLNAAkVLKLSTLMTA--------- 230
Cdd:COG1009   287 lFAALIALAQTDIKRVLAYSTVSQLGYMFLALG------------VGAYVAALFHLLTHA-FFKALLFLGAgsvihatgt 353

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 231 ---------WTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQE-LTKQDMAPAATVIA 280
Cdd:COG1009   354 rdirkmgglRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVA 413
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 89-268 9.42e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 50.34  E-value: 9.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  89 PISCLLLTSAI--SMKLGLvpfHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPTVLTTMAI-----LSAAL 161
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 162 GGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTLNAAKVLKLSTL-------MTAWTKT 234
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrkMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1491570386 235 -PSLNAMLLLTLLSLAGLPPLTGFFPKWLIIqELT 268
Cdd:MTH00032  383 iPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-333 1.64e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 49.58  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  93 LLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMK-------LPPLTLLYMTSPSLNPTVLTTMAIL------SA 159
Cdd:PRK12667  227 ALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVnvgayaiIRFLYTIFGISPSLIDFRAALSPILiilgavSA 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 160 ALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SLMTAAVFLT----LNAAKVLKLSTLMTAW 231
Cdd:PRK12667  307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhAIAKSLLFLAsgvfIHAAGTRDIDELAGLG 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 232 TKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKq 311
Cdd:PRK12667  387 RKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEH- 465

                         250       260
                  ....*....|....*....|..
gi 1491570386 312 wrtnKPTNPMIAILTTLSIVLL 333
Cdd:PRK12667  466 ----KESPSMSVVILVLALAVL 483
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 10-216 2.44e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.98  E-value: 2.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  10 LILGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 83
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  84 TQLTHP----------ISCLLLTSAISMKLGLVPFHFWFPEVLQGSP-LITGLLLSTVMKLPPLTLLYMTS-------PS 145
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1491570386 146 LNPTVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTAAVFLTL 216
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
52-200 3.70e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 48.54  E-value: 3.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  52 AATKYFLTQAAASALVLFSSMTNAWHTG--QWDITQL---THPISC-LLLTSAISMKLG----LVPFHFWFPEV-LQGSP 120
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTqLLLLAPILVGFGikipLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 121 LITGLLLSTVMKLPPLTLL------YMTSPSLNPTVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYD 194
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 1491570386 195 PKLTLL 200
Cdd:PRK06473  318 TPLSIL 323
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 31-272 3.92e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.45  E-value: 3.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  31 EINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT-------QLTHP----ISCLLLTSAI 99
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTgfalIVFLFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 100 SMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMK-------------LPPLTLL-----YMTSPSLNpTVLTTMAILSAAL 161
Cdd:PRK08668  207 VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLPGTKLFsefgtYRGVPLFN-YILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 162 GGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLT----LLNFYLYSLMTAAVFLTLNA----AKVLKLSTLMTAWTK 233
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEK 365

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1491570386 234 TPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQELTKQDM 272
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-279 1.00e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.18  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  30 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQLTH--PISCLLLT------SAIS 100
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 101 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTVMKLP--PLTLLY--------MTSPSLNpTVLTTMAILSAALGGWMGLNQ 169
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 170 TQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSLMTAAVFLTLNA----AKVLKLSTLMTAWTKTPSLNAML 241
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAievtYGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1491570386 242 LLTLLSLAGLPPLTGFFPKWLIIQELTKQDMAPAATVI 279
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
49-213 2.47e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 46.17  E-value: 2.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  49 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPISCLLLTSAISMKLGLV----------------PFHFWF 112
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 113 PEVLQGSPLITGLLLSTVMKLPPLTLLYMTSP--SLNPTVLTTMAI---LSAALGGWMGLNQTQIRKIMAFSSISHLGWM 187
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330

                         170       180
                  ....*....|....*....|....*....
gi 1491570386 188 AI---ILAYDPKltllnfyLYSLMTAAVF 213
Cdd:PRK07376  331 VMamgCGAYSAG-------LFHLMTHAYF 352
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 93-260 2.62e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.07  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  93 LLLTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTVM---------KLPPLtllYMTSPSLNPTVLTtMAILSAALGG 163
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 164 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPK------LTLLnfYLYSLMTAAVFLTLNAAK-------VLKLSTLmta 230
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDhstgtrdIRKLSGL--- 357

                         170       180       190
                  ....*....|....*....|....*....|
gi 1491570386 231 WTKTPSLNAMLLLTLLSLAGLPPLTGFFPK 260
Cdd:PRK12644  358 GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 47-189 2.63e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.58  E-value: 2.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  47 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQL-THPIS---------CLLLTSAIsmKLGLVPFHFWF 112
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPpgvqywlflAFFIAFAV--KMPMFPLHTWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 113 PEVLQ-----GSPLITGLLLST--------VMKLPPLTLLYMTspslnpTVLTTMAILSAALGGWMGLNQTQIRKIMAFS 179
Cdd:PRK05846  235 PDAHVqaptaGSVLLAGILLKMgaygllrfSLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYS 308

                         170
                  ....*....|
gi 1491570386 180 SISHLGWMAI 189
Cdd:PRK05846  309 SISHMGFVTL 318
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 92-265 2.92e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 45.84  E-value: 2.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  92 CLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSP--SLNPTVLTTMAI---LSAALGGWMG 166
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALIIVTIvgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 167 LNQTQIRKIMAFSSISHLGWMAIILAydpkltlLNFY---LYSLMTAAVF---LTLNAAKVL----------KLSTLMTA 230
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFkalLFLSAGSVIhalsdeqdmrKMGGLISF 365

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1491570386 231 wtkTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIQ 265
Cdd:MTH00020  366 ---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
93-265 4.04e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 4.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  93 LLLTSAISMKLGLVPFhFWFPEVLQGSPLITGLLLSTVMK-------LPPLTLLYMTSPSLNPTVLTTMAILSAALGGWM 165
Cdd:PRK12663  211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALG 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 166 GLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYLYSLMT--AAVFLTLNAAKVL----KLSTLMTAWTKTPSL 237
Cdd:PRK12663  290 ALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLF 369

                         170       180
                  ....*....|....*....|....*...
gi 1491570386 238 NAMLLLTLLSLAGLPPLTGFFPKWLIIQ 265
Cdd:PRK12663  370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
52-265 9.17e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.93  E-value: 9.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  52 AATKYFLTQAAASALVLFSSMTNAWHTGQ----------WDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEV-LQGSP 120
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdydaistQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 121 LITGLLLSTVMKLPPLTL------LYMTSPSLNPTVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYD 194
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 195 PKLTLL----NFYLYSLMTAAVF--LTLNAAKV-----LKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFFPKWLI 263
Cdd:PRK07363  318 TQLSLLgavaQMISHGLILALLFhlVGIVERKVgtrdlDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                  ..
gi 1491570386 264 IQ 265
Cdd:PRK07363  398 FQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 52-185 1.16e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  52 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP-----ISCLLLTSAISMKLGLVPFHFWFPEVLQGSP-----L 121
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1491570386 122 ITGLLLSTVMKLPPLTLLYMTSPSLNPTVLT-TMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 185
Cdd:PRK08667  243 MSGVMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 17-192 1.49e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  17 TVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSM---TNAWhtgqwdiTQLTHPISCL 93
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA-------TVMGDGEMAI 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  94 LLTSAISM----------------------KLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYM--------TS 143
Cdd:PRK06458  197 LWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyilidaaIG 276

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1491570386 144 PSLNPTVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILA 192
Cdd:PRK06458  277 SDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALG 325
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-264 1.98e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.18  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  30 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------ISCLLLT 96
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  97 SAISMKLGLVPFHFWFPEVLQGSPLITGLLLS-TVMKLPPLTL-----------LYMTSPSLNpTVLTTMAILSAALGGW 164
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 165 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SLMTAAVFLTLNAAK----VLKLSTLMTAWTKTPS 236
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1491570386 237 LNAMLLLTLLSLAGLPPLTGFFPKWLII 264
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 45-193 2.17e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 2.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  45 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP--------------ISCLLLTSAISMKLGLVPFHF 110
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDselienikghplflITLILIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 111 WFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSLNPT-----VLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 185
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                  ....*...
gi 1491570386 186 WMAIILAY 193
Cdd:PRK12649  316 YLMTMYGY 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-191 3.75e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.22  E-value: 3.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  98 AISMKLGLVPFHFWFPEVLQGSPLITGLLLSTV-MKLPPLTLLYMTSP-------SLNPTVLtTMAILSAALGGWMGLNQ 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|..
gi 1491570386 170 TQIRKIMAFSSISHLGWMAIIL 191
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITL 339
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 25-194 4.04e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 4.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  25 LAWtglEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PISCLLLTS-- 97
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYag 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  98 ---AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLST--------VMKLPPLTLLYMtSPslnptVLTTMAILSAAL 161
Cdd:PRK12561  191 fliAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLLKMggyalirfNVQMLPDAHVYF-AP-----ALAILGVVNIIY 264

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1491570386 162 GGWMGLNQTQIRKIMAFSSISHLGWMAI-ILAYD 194
Cdd:PRK12561  265 GALNAFAQDNVKRRLAYSSVSHMGFVLLgIAAFT 298
PRK12650 PRK12650
DUF4040 family protein;
77-187 1.48e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  77 HTGQW-DITQLTHPISCLLLTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSPSL--NPT---V 150
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwL 274

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1491570386 151 LTTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 187
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 65-191 2.30e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 39.55  E-value: 2.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  65 ALVLFSSMTNAWHTGQWDITQLTHPISCLLLTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSP 144
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1491570386 145 --SLNPTVLTTMAILSAA---LGGWMGLNQTQIRKIMAFSSISHLGWMAIIL 191
Cdd:MTH00211  260 lfQNNQLILGAVLLLGALtmlFGALCALTQNDIKKIVAFSTTSQLGLMMVTL 311
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 90-268 2.97e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 39.22  E-value: 2.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  90 ISCLLLTSAI--SMKLGLvpfHFWFPEVLQGSPLITGLLLSTVMKLPPLTLLYMTSP-----SLNPTVLTTMAILSAALG 162
Cdd:MTH00210  213 ICLLLFIGAVgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlfegsPLALTIVTILGALTAFFA 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 163 GWMGLNQTQIRKIMAFSSISHLGWMAIILAydpkltLLNFY--LYSLMTAAVF---LTLNAAKVL----------KLSTL 227
Cdd:MTH00210  290 ATVGVVQNDLKKVIAYSTCSQLGYMVMVCG------ISNYStsLFHLMNHAFFkalLFLSAGSVIhavsdeqdmrKMGGL 363

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1491570386 228 MTAwtkTPSLNAMLLLTLLSLAGLPPLTGFFPKWLIIqELT 268
Cdd:MTH00210  364 IKS---IPFTYVMILIGSLSLMGFPYLTGFYSKDLIL-ELT 400
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-268 7.05e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.01  E-value: 7.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386  30 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PISCLLLTSAISMKLGLVP 107
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 108 FHFWFPEVLQGSPLITGLLLS-TVMK--LPPLTLLYMTSPSLNPtVLTTMAILSAALGGWMGLNQTQIRKIMAFSSISHL 184
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKagVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570386 185 GWmaIILAydPKLTLLNFYLYSLMTAAVFL---TLNAAKVLKLSTLMTAWTKTPSLnamlLLTLLSLAGLPPLTGFFPKW 261
Cdd:PRK07234  282 GF--ILAA--PLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLGIGKWIPL----TMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 1491570386 262 LIIQELT 268
Cdd:PRK07234  354 LTLKNLL 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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