|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-323 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 680.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00131 8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00131 88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00131 168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00131 248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00131 328 LVA 330
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-323 |
5.51e-117 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 342.93 E-value: 5.51e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 2 PLFKIVNDaLIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 81
Cdd:COG1290 19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 82 FFFICIYLHIGRGLYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWI 157
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 158 WGGFSVDNATLTRFFAFH-FLLPFTIIAATILHALFLHETGSNNPIG----LNSDADKISFHPYFSYKDLLGFIILLTAL 232
Cdd:COG1290 176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 233 ASLSLFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPLLHLSKQQGLTF 310
Cdd:COG1290 256 ALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333
|
330
....*....|...
gi 1534466656 311 RPLSQILFWTLVA 323
Cdd:COG1290 334 RPVRTALGVAFIV 346
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
2-199 |
1.46e-94 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 278.87 E-value: 1.46e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 2 PLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 81
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 82 FFFICIYLHIGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWG 159
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1534466656 160 GFSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSN 199
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
11-197 |
7.83e-87 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 258.85 E-value: 7.83e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 11 LIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLH 90
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 91 IGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSVDNATL 168
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 1534466656 169 TRFFAFHFLLPFTIIAATILHALFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
251-324 |
3.81e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 57.88 E-value: 3.81e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534466656 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLL-HLSKQQGLTFRPLSQI--LFWTLVAI 324
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTvfLFGTVVAL 141
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-323 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 680.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00131 8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00131 88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00131 168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00131 248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00131 328 LVA 330
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-323 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 637.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00119 9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00119 89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00119 169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00119 249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00119 329 LVA 331
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-323 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 614.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00074 9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00074 89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00074 169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00074 249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00074 329 LVA 331
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-323 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 609.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00100 8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00100 88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00100 168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00100 248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00100 328 LVA 330
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-323 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 598.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00191 5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00191 85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00191 165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00191 245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00191 325 WVA 327
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
4-324 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 592.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 4 FKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFF 83
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 84 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSV 163
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 164 DNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSPNLL 243
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 244 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWTLVA 323
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
.
gi 1534466656 324 I 324
Cdd:MTH00156 321 I 321
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-324 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 558.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00145 9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00145 89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00145 169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00145 249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328
|
....
gi 1534466656 321 LVAI 324
Cdd:MTH00145 329 FVGN 332
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-324 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 548.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00034 8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00034 88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00034 168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00034 248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327
|
....
gi 1534466656 321 LVAI 324
Cdd:MTH00034 328 LIAT 331
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-324 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 526.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00016 9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00016 89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00016 169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00016 249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328
|
....
gi 1534466656 321 LVAI 324
Cdd:MTH00016 329 LVSN 332
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-323 |
3.13e-166 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 467.48 E-value: 3.13e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00224 9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00224 89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00224 169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00224 249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00224 329 LVT 331
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-323 |
2.18e-164 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 462.63 E-value: 2.18e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 1 HPLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00022 7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGG 160
Cdd:MTH00022 87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 161 FSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSP 240
Cdd:MTH00022 167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00022 247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00022 327 LIV 329
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
2-323 |
1.65e-161 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 455.70 E-value: 1.65e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 2 PLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 81
Cdd:MTH00053 10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 82 FFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGF 161
Cdd:MTH00053 90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 162 SVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSPN 241
Cdd:MTH00053 170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 242 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWTL 321
Cdd:MTH00053 250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329
|
..
gi 1534466656 322 VA 323
Cdd:MTH00053 330 VG 331
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
3-323 |
7.27e-127 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 367.73 E-value: 7.27e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 3 LFKIVNDaLIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASF 82
Cdd:MTH00033 8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 83 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFS 162
Cdd:MTH00033 87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 163 VDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFS--P 240
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWT 320
Cdd:MTH00033 247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326
|
...
gi 1534466656 321 LVA 323
Cdd:MTH00033 327 IVG 329
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-323 |
5.51e-117 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 342.93 E-value: 5.51e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 2 PLFKIVNDaLIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 81
Cdd:COG1290 19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 82 FFFICIYLHIGRGLYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWI 157
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 158 WGGFSVDNATLTRFFAFH-FLLPFTIIAATILHALFLHETGSNNPIG----LNSDADKISFHPYFSYKDLLGFIILLTAL 232
Cdd:COG1290 176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 233 ASLSLFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPLLHLSKQQGLTF 310
Cdd:COG1290 256 ALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333
|
330
....*....|...
gi 1534466656 311 RPLSQILFWTLVA 323
Cdd:COG1290 334 RPVRTALGVAFIV 346
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
5-301 |
2.39e-115 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 337.30 E-value: 2.39e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 5 KIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFF 84
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 85 ICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSVD 164
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 165 NATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIIlLTALASLSLFSPNLLG 244
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIF-WLVFIIFSLFYPFNLG 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1534466656 245 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLH 301
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN 296
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
2-199 |
1.46e-94 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 278.87 E-value: 1.46e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 2 PLFKIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 81
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 82 FFFICIYLHIGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWG 159
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1534466656 160 GFSVDNATLTRFFAFHFLLPFTIIAATILHALFLHETGSN 199
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
11-197 |
7.83e-87 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 258.85 E-value: 7.83e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 11 LIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLH 90
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 91 IGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSVDNATL 168
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 1534466656 169 TRFFAFHFLLPFTIIAATILHALFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
5-322 |
1.11e-83 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 256.83 E-value: 1.11e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 5 KIVNDALIDLPAPSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFF 84
Cdd:MTH00046 3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 85 ICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSVD 164
Cdd:MTH00046 83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 165 NATLTRFFAFHFLLPFTIIAATILHALFLHETGSNNPIGL-NSDADKISFHPYFSYKDLLGFIILLTALASLSLFSPNLL 243
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1534466656 244 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILVLMVVPllhlSKQQGLTFRPLSQILFWTLV 322
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIV 316
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
81-246 |
4.46e-46 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 153.94 E-value: 4.46e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 81 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIW 158
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 159 GGFSVDNATLTRFFAFHF-LLPFTIIAATILHALFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSL 237
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 1534466656 238 FSPNLLGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
200-323 |
4.32e-42 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 142.78 E-value: 4.32e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 200 NPIGLNSDADKISFHPYFSYKDLLGFIILLTALASLSLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 279
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1534466656 280 KLGGVLALLFSILVLMVVPLLHLSKQQGlTFRPLSQILFWTLVA 323
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLA 123
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
26-202 |
1.37e-38 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 136.38 E-value: 1.37e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 26 FGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 104
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 105 -TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSVDNATLTRFFAFH-FLLPFTI 182
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 1534466656 183 IAATILHALFLHETGSNNPI 202
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
17-202 |
2.90e-32 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 119.44 E-value: 2.90e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 17 PSNISTWWNFGSLLLLCLAVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLHIGRGLY 96
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534466656 97 YGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGNALVQWIWGGFSVDNATLTRFFAF 174
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*....
gi 1534466656 175 H-FLLPFTIIAATILHALFLHETGSNNPI 202
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
251-323 |
4.45e-32 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 115.27 E-value: 4.45e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534466656 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWTLVA 323
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVV 73
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
251-324 |
1.59e-10 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 59.04 E-value: 1.59e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534466656 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLL-HLSKQQGLTFRPLSQ--ILFWTLVAI 324
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATavFLFGTLVTL 142
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
251-324 |
2.56e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 58.09 E-value: 2.56e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534466656 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLL-HLSKQQGLTFRPLSQI--LFWTLVAI 324
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTvfLIGTAVAL 141
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
251-324 |
3.81e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 57.88 E-value: 3.81e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534466656 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPLL-HLSKQQGLTFRPLSQI--LFWTLVAI 324
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTvfLFGTVVAL 141
|
|
|