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Conserved domains on  [gi|259511327|sp|B4KZN6|]
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RecName: Full=SOSS complex subunit C homolog

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SOSSC super family cl24483
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 17-103 6.51e-20

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


The actual alignment was detected with superfamily member pfam15925:

Pssm-ID: 464945  Cd Length: 101  Bit Score: 77.72  E-value: 6.51e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259511327   17 ILEEIQTKKQLL------IGLGSTAN-QMPAPQLLGQPTVTAEFVQNVSATPNAAGGI-------AAPRSAFNPTSSTTL 82
Cdd:pfam15925   1 ILEEIQKKKQLLmqgqivLGLSATNGpQLATPSSVPQQPRSLPGPTNVTGPPDLAGNTsvssnhkASQRQALQHAHSTSP 80

                          90       100
                  ....*....|....*....|.
gi 259511327   83 GFFIPQDSYFGNSFIPVLPRL 103
Cdd:pfam15925  81 GFFITQDSAFGNLILPVLPRF 101
 
Name Accession Description Interval E-value
SOSSC pfam15925
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 17-103 6.51e-20

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


Pssm-ID: 464945  Cd Length: 101  Bit Score: 77.72  E-value: 6.51e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259511327   17 ILEEIQTKKQLL------IGLGSTAN-QMPAPQLLGQPTVTAEFVQNVSATPNAAGGI-------AAPRSAFNPTSSTTL 82
Cdd:pfam15925   1 ILEEIQKKKQLLmqgqivLGLSATNGpQLATPSSVPQQPRSLPGPTNVTGPPDLAGNTsvssnhkASQRQALQHAHSTSP 80

                          90       100
                  ....*....|....*....|.
gi 259511327   83 GFFIPQDSYFGNSFIPVLPRL 103
Cdd:pfam15925  81 GFFITQDSAFGNLILPVLPRF 101
 
Name Accession Description Interval E-value
SOSSC pfam15925
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 17-103 6.51e-20

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


Pssm-ID: 464945  Cd Length: 101  Bit Score: 77.72  E-value: 6.51e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259511327   17 ILEEIQTKKQLL------IGLGSTAN-QMPAPQLLGQPTVTAEFVQNVSATPNAAGGI-------AAPRSAFNPTSSTTL 82
Cdd:pfam15925   1 ILEEIQKKKQLLmqgqivLGLSATNGpQLATPSSVPQQPRSLPGPTNVTGPPDLAGNTsvssnhkASQRQALQHAHSTSP 80

                          90       100
                  ....*....|....*....|.
gi 259511327   83 GFFIPQDSYFGNSFIPVLPRL 103
Cdd:pfam15925  81 GFFITQDSAFGNLILPVLPRF 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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