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Conserved domains on  [gi|21104402|dbj|BAB93471|]
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IMR-90 ribosomal protein S3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00084 super family cl29637
40S ribosomal protein S3; Provisional
 1-90 7.01e-53

40S ribosomal protein S3; Provisional


The actual alignment was detected with superfamily member PTZ00084:

Pssm-ID: 240260 [Multi-domain]  Cd Length: 220  Bit Score: 165.22  E-value: 7.01e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21104402    1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPD 80
Cdd:PTZ00084 127 MESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQPKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPD 206

                         90
                 ....*....|
gi 21104402   81 HVSIVEPKDE 90
Cdd:PTZ00084 207 VITVLEPKEE 216
 
Name Accession Description Interval E-value
PTZ00084 PTZ00084
40S ribosomal protein S3; Provisional
 1-90 7.01e-53

40S ribosomal protein S3; Provisional


Pssm-ID: 240260 [Multi-domain]  Cd Length: 220  Bit Score: 165.22  E-value: 7.01e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21104402    1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPD 80
Cdd:PTZ00084 127 MESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQPKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPD 206

                         90
                 ....*....|
gi 21104402   81 HVSIVEPKDE 90
Cdd:PTZ00084 207 VITVLEPKEE 216
uS3_euk_arch TIGR01008
ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of ...
 1-86 4.03e-33

ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273393 [Multi-domain]  Cd Length: 195  Bit Score: 114.06  E-value: 4.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21104402     1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMlpwdptgkiGPKKPLPD 80
Cdd:TIGR01008 119 MEAGAKGVEVTISGKLTGERAKTEKFAAGYLKHSGEPAEELVDKGFAIALLKLGVLGVKVKIM---------PPDAKLPD 189


                  ....*.
gi 21104402    81 HVSIVE 86
Cdd:TIGR01008 190 EVEIKE 195
Ribosomal_S3_C pfam00189
Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, ...
 1-62 6.51e-26

Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.


Pssm-ID: 425514 [Multi-domain]  Cd Length: 83  Bit Score: 92.43  E-value: 6.51e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21104402     1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSgdPVNYYVDTAVRHVLLRQGVLGIKVKI 62
Cdd:pfam00189  23 MRAGAKGIKIIISGRLGGaERARSEKYREGRVPLH--TLRADIDYAFAEALTKYGVIGVKVWI 83
 
Name Accession Description Interval E-value
PTZ00084 PTZ00084
40S ribosomal protein S3; Provisional
 1-90 7.01e-53

40S ribosomal protein S3; Provisional


Pssm-ID: 240260 [Multi-domain]  Cd Length: 220  Bit Score: 165.22  E-value: 7.01e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21104402    1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPD 80
Cdd:PTZ00084 127 MESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQPKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPD 206

                         90
                 ....*....|
gi 21104402   81 HVSIVEPKDE 90
Cdd:PTZ00084 207 VITVLEPKEE 216
uS3_euk_arch TIGR01008
ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of ...
 1-86 4.03e-33

ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273393 [Multi-domain]  Cd Length: 195  Bit Score: 114.06  E-value: 4.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21104402     1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMlpwdptgkiGPKKPLPD 80
Cdd:TIGR01008 119 MEAGAKGVEVTISGKLTGERAKTEKFAAGYLKHSGEPAEELVDKGFAIALLKLGVLGVKVKIM---------PPDAKLPD 189


                  ....*.
gi 21104402    81 HVSIVE 86
Cdd:TIGR01008 190 EVEIKE 195
rps3p PRK04191
30S ribosomal protein S3P; Reviewed
 1-90 6.43e-27

30S ribosomal protein S3P; Reviewed


Pssm-ID: 235247 [Multi-domain]  Cd Length: 207  Bit Score: 98.40  E-value: 6.43e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21104402    1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPwdptgkiGPKkpLPD 80
Cdd:PRK04191 121 MEAGALGVEIIISGKLTGERARTEKFTEGYIKKSGEPAEELVDRGFAIAKLKLGIIGVEVRIMPP-------DAK--LPD 191

                         90
                 ....*....|
gi 21104402   81 HVSIVEPKDE 90
Cdd:PRK04191 192 EIEIKEPVEV 201
Ribosomal_S3_C pfam00189
Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, ...
 1-62 6.51e-26

Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.


Pssm-ID: 425514 [Multi-domain]  Cd Length: 83  Bit Score: 92.43  E-value: 6.51e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21104402     1 MESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSgdPVNYYVDTAVRHVLLRQGVLGIKVKI 62
Cdd:pfam00189  23 MRAGAKGIKIIISGRLGGaERARSEKYREGRVPLH--TLRADIDYAFAEALTKYGVIGVKVWI 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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