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Conserved domains on  [gi|21757144|dbj|BAC05035|]
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unnamed protein product [Homo sapiens]

Protein Classification

DUF4200 domain-containing protein( domain architecture ID 11227509)

DUF4200 domain-containing protein such as cilia- and flagella-associated protein (CFAP), which is a coiled-coil domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
 151-269 5.91e-26

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


:

Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 102.65  E-value: 5.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21757144   151 YIKQKRQMFLLQYALDVKRREIQRLETLATKEEARLERAEKSLEKDAALFDEFVRENDCSSVQAMRAAEKETKAKIEKIL 230
Cdd:pfam13863   1 LLEKKREMFLVQLALDAKREEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEK 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 21757144   231 EIRDLTTQIVNIKGEISRFEDTLKHYKVYKDFLYKLSPK 269
Cdd:pfam13863  81 EIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
 151-269 5.91e-26

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 102.65  E-value: 5.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21757144   151 YIKQKRQMFLLQYALDVKRREIQRLETLATKEEARLERAEKSLEKDAALFDEFVRENDCSSVQAMRAAEKETKAKIEKIL 230
Cdd:pfam13863   1 LLEKKREMFLVQLALDAKREEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEK 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 21757144   231 EIRDLTTQIVNIKGEISRFEDTLKHYKVYKDFLYKLSPK 269
Cdd:pfam13863  81 EIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
 151-269 5.91e-26

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 102.65  E-value: 5.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21757144   151 YIKQKRQMFLLQYALDVKRREIQRLETLATKEEARLERAEKSLEKDAALFDEFVRENDCSSVQAMRAAEKETKAKIEKIL 230
Cdd:pfam13863   1 LLEKKREMFLVQLALDAKREEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEK 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 21757144   231 EIRDLTTQIVNIKGEISRFEDTLKHYKVYKDFLYKLSPK 269
Cdd:pfam13863  81 EIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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