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Conserved domains on  [gi|26351037|dbj|BAC39155|]
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unnamed protein product [Mus musculus]

Protein Classification

VWC domain-containing protein( domain architecture ID 10642013)

VWC domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
40-95 8.62e-19

von Willebrand factor (vWF) type C domain;


:

Pssm-ID: 214564  Cd Length: 59  Bit Score: 77.94  E-value: 8.62e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 26351037     40 CTQHGQMYLNRDIWKPSPCQICVCDNGA-ILCDKIECPEVLNCANPIT--PTGECCPVC 95
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTtVLCDPVECPPPPDCPNPERvkPPGECCPRC 59
 
Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
40-95 8.62e-19

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 77.94  E-value: 8.62e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 26351037     40 CTQHGQMYLNRDIWKPSPCQICVCDNGA-ILCDKIECPEVLNCANPIT--PTGECCPVC 95
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTtVLCDPVECPPPPDCPNPERvkPPGECCPRC 59
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 40-95 2.28e-17

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 74.00  E-value: 2.28e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 26351037    40 CTQHGQMYLNRDIWKPSPCQICVCDNGAILCDKIECPEvLNCANP--ITPTGECCPVC 95
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPP-LDCPNPrlEIPPGECCPVC 57
 
Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
40-95 8.62e-19

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 77.94  E-value: 8.62e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 26351037     40 CTQHGQMYLNRDIWKPSPCQICVCDNGA-ILCDKIECPEVLNCANPIT--PTGECCPVC 95
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTtVLCDPVECPPPPDCPNPERvkPPGECCPRC 59
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 40-95 2.28e-17

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 74.00  E-value: 2.28e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 26351037    40 CTQHGQMYLNRDIWKPSPCQICVCDNGAILCDKIECPEvLNCANP--ITPTGECCPVC 95
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPP-LDCPNPrlEIPPGECCPVC 57
Amnionless pfam14828
Amnionless; The amnionless protein forms a complex with cubilin. This complex is necessary for ...
 14-95 3.46e-05

Amnionless; The amnionless protein forms a complex with cubilin. This complex is necessary for vitamin B12 uptake.


Pssm-ID: 464340  Cd Length: 449  Bit Score: 44.69  E-value: 3.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26351037    14 LSVLLGYC-------VSIKAQEQENDEYDEEIACTQHGQMYLNRD---IWKPSPC---QICVCDNGAIL---CDKIE--C 75
Cdd:pfam14828 137 FRVDLESGrpirvksVSLLGQTFTSDEDFAEFLSSRLGQLQFHGAgalRVGPEACsdpSGCGCGNDENLeriCANVLqrC 216

                          90       100
                  ....*....|....*....|
gi 26351037    76 PeVLNCANPITPTGECCPVC 95
Cdd:pfam14828 217 P-PPHCLSPLRPEGHCCDVC 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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