NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|54650368|dbj|BAD67065|]
View 

glycoprotein, partial [Hepacivirus hominis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
HCV_NS1 super family cl03263
Hepatitis C virus non-structural protein E2/NS1; The hypervariable region of the E2/NS1 region ...
15-48 9.20e-12

Hepatitis C virus non-structural protein E2/NS1; The hypervariable region of the E2/NS1 region of hepatitis C virus varies greatly between viral isolates. E2 is thought to encode a structurally unconstrained envelope protein.


The actual alignment was detected with superfamily member pfam01560:

Pssm-ID: 110557  Cd Length: 344  Bit Score: 56.78  E-value: 9.20e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 54650368    15 YTTGGAQGRTAHALTSFFSPGPAQRIQLVNTNGS 48
Cdd:pfam01560   1 HVTGGSAARTTRGLVSLFSPGAKQNIQLINTNGS 34
 
Name Accession Description Interval E-value
HCV_NS1 pfam01560
Hepatitis C virus non-structural protein E2/NS1; The hypervariable region of the E2/NS1 region ...
15-48 9.20e-12

Hepatitis C virus non-structural protein E2/NS1; The hypervariable region of the E2/NS1 region of hepatitis C virus varies greatly between viral isolates. E2 is thought to encode a structurally unconstrained envelope protein.


Pssm-ID: 110557  Cd Length: 344  Bit Score: 56.78  E-value: 9.20e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 54650368    15 YTTGGAQGRTAHALTSFFSPGPAQRIQLVNTNGS 48
Cdd:pfam01560   1 HVTGGSAARTTRGLVSLFSPGAKQNIQLINTNGS 34
 
Name Accession Description Interval E-value
HCV_NS1 pfam01560
Hepatitis C virus non-structural protein E2/NS1; The hypervariable region of the E2/NS1 region ...
15-48 9.20e-12

Hepatitis C virus non-structural protein E2/NS1; The hypervariable region of the E2/NS1 region of hepatitis C virus varies greatly between viral isolates. E2 is thought to encode a structurally unconstrained envelope protein.


Pssm-ID: 110557  Cd Length: 344  Bit Score: 56.78  E-value: 9.20e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 54650368    15 YTTGGAQGRTAHALTSFFSPGPAQRIQLVNTNGS 48
Cdd:pfam01560   1 HVTGGSAARTTRGLVSLFSPGAKQNIQLINTNGS 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH