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Conserved domains on  [gi|74216317|dbj|BAE25107|]
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unnamed protein product, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Med15 super family cl26621
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 10-325 3.09e-08

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


The actual alignment was detected with superfamily member pfam09606:

Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 58.48  E-value: 3.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     10 GAGPPQNQMQVSHGPPN-----MMQPSLMGIHGNINNQQAGSSGVPQVTLGNMQGQ----PQQGPPSQL----MGMHQQI 76
Cdd:pfam09606  136 GAGFPSQMSRVGRMQPGgqaggMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGGqqgpMGGQMPPQMgvpgMPGPADA 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     77 VPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQ 156
Cdd:pfam09606  216 GAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMP 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    157 QNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPVNNSPSQvmgiQGQVL 236
Cdd:pfam09606  296 NVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANPMQ----RGQPG 371

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    237 RPPGPSPHMAQQHNDPVTtanndvnLSQMMPDVSMQQASMVPPHVQSMQGNSASGSHFSGHGVSFNAPFGGAPNGSQMSC 316
Cdd:pfam09606  372 MMSSPSPVPGQQVRQVTP-------NQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQRTIG 444


                   ....*....
gi 74216317    317 GQNPGFPVN 325
Cdd:pfam09606  445 QDSPGGSLN 453
KAR9 super family cl25816
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 532-768 3.80e-04

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


The actual alignment was detected with superfamily member pfam08580:

Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 45.21  E-value: 3.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    532 PASVPPSPD-KQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPE-ASGSEV---PSVAGGPNNMPShLVVSQN 606
Cdd:pfam08580  430 PGSSPPSSViMTPVNKGSKTPSSRRGSSFDFGSSSERVINSKLRRESKLPQiASTLKQtkrPSKIPRASPNHS-GFLSTP 508

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    607 QLMMTGPKPGPSplsATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRP---------YYPQTPNNRPP 677
Cdd:pfam08580  509 SNTATSETPTPA---LRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPsrssrssstLPPVSPLSRDK 585

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    678 STEPSEISLSPERLNASIAGLFPPQINIPLPRRPNLNrgfdqqglNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVV 757
Cdd:pfam08580  586 SRSPAPTCRSVSRASRRRASRKPTRIGSPNSRTSLLD--------EPPYPKLTLSKGLPRTPRNRQSYAGTSPSRSVSVS 657

                          250
                   ....*....|.
gi 74216317    758 VNSGKQSNPGT 768
Cdd:pfam08580  658 SGLGPQTRPGT 668
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1122-1264 8.30e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 8.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1122 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVQLPSPPCTSS-PV 1200
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPADpPA 2809

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74216317  1201 VAPNPSVQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTN-SPGSSANRRSPVSSSKGK 1264
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvAPGGDVRRRPPSRSPAAK 2874
 
Name Accession Description Interval E-value
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 10-325 3.09e-08

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 58.48  E-value: 3.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     10 GAGPPQNQMQVSHGPPN-----MMQPSLMGIHGNINNQQAGSSGVPQVTLGNMQGQ----PQQGPPSQL----MGMHQQI 76
Cdd:pfam09606  136 GAGFPSQMSRVGRMQPGgqaggMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGGqqgpMGGQMPPQMgvpgMPGPADA 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     77 VPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQ 156
Cdd:pfam09606  216 GAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMP 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    157 QNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPVNNSPSQvmgiQGQVL 236
Cdd:pfam09606  296 NVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANPMQ----RGQPG 371

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    237 RPPGPSPHMAQQHNDPVTtanndvnLSQMMPDVSMQQASMVPPHVQSMQGNSASGSHFSGHGVSFNAPFGGAPNGSQMSC 316
Cdd:pfam09606  372 MMSSPSPVPGQQVRQVTP-------NQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQRTIG 444


                   ....*....
gi 74216317    317 GQNPGFPVN 325
Cdd:pfam09606  445 QDSPGGSLN 453
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 67-218 1.36e-05

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.81  E-value: 1.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     67 SQLMGMHQQIVPsqgqMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMtPPKQMLPQQGPQMMAPhnqm 146
Cdd:TIGR01628  369 AHLQDQFMQLQP----RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMP-TPMGPGGPLRPNGLAP---- 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74216317    147 MGPQGQVLLQQNPMIEQimtNQMQGNKAQFNSQNQSNVMPGPAQimrGPTPNMQGNMvQFTGQMSGQMLPQQ 218
Cdd:TIGR01628  440 MNAVRAPSRNAQNAAQK---PPMQPVMYPPNYQSLPLSQDLPQP---QSTASQGGQN-KKLAQVLASATPQM 504
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 532-768 3.80e-04

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 45.21  E-value: 3.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    532 PASVPPSPD-KQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPE-ASGSEV---PSVAGGPNNMPShLVVSQN 606
Cdd:pfam08580  430 PGSSPPSSViMTPVNKGSKTPSSRRGSSFDFGSSSERVINSKLRRESKLPQiASTLKQtkrPSKIPRASPNHS-GFLSTP 508

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    607 QLMMTGPKPGPSplsATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRP---------YYPQTPNNRPP 677
Cdd:pfam08580  509 SNTATSETPTPA---LRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPsrssrssstLPPVSPLSRDK 585

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    678 STEPSEISLSPERLNASIAGLFPPQINIPLPRRPNLNrgfdqqglNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVV 757
Cdd:pfam08580  586 SRSPAPTCRSVSRASRRRASRKPTRIGSPNSRTSLLD--------EPPYPKLTLSKGLPRTPRNRQSYAGTSPSRSVSVS 657

                          250
                   ....*....|.
gi 74216317    758 VNSGKQSNPGT 768
Cdd:pfam08580  658 SGLGPQTRPGT 668
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1122-1264 8.30e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 8.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1122 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVQLPSPPCTSS-PV 1200
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPADpPA 2809

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74216317  1201 VAPNPSVQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTN-SPGSSANRRSPVSSSKGK 1264
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvAPGGDVRRRPPSRSPAAK 2874
PHA03247 PHA03247
large tegument protein UL36; Provisional
 503-716 6.51e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 6.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   503 PPRGPLNPDSQRMPVQQSgnVPVMVGLQGPASVPPSPDKQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPEA 582
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   583 ---SGSEVPSVAGGPNNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPT 651
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 74216317   652 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSE----ISLSPERLNASIAGLFPPQINIPLPRRPNLNRG 716
Cdd:PHA03247 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPppppRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970
 
Name Accession Description Interval E-value
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 10-325 3.09e-08

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 58.48  E-value: 3.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     10 GAGPPQNQMQVSHGPPN-----MMQPSLMGIHGNINNQQAGSSGVPQVTLGNMQGQ----PQQGPPSQL----MGMHQQI 76
Cdd:pfam09606  136 GAGFPSQMSRVGRMQPGgqaggMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGGqqgpMGGQMPPQMgvpgMPGPADA 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     77 VPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQ 156
Cdd:pfam09606  216 GAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMP 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    157 QNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPVNNSPSQvmgiQGQVL 236
Cdd:pfam09606  296 NVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANPMQ----RGQPG 371

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    237 RPPGPSPHMAQQHNDPVTtanndvnLSQMMPDVSMQQASMVPPHVQSMQGNSASGSHFSGHGVSFNAPFGGAPNGSQMSC 316
Cdd:pfam09606  372 MMSSPSPVPGQQVRQVTP-------NQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQRTIG 444


                   ....*....
gi 74216317    317 GQNPGFPVN 325
Cdd:pfam09606  445 QDSPGGSLN 453
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 4-251 6.58e-08

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 57.33  E-value: 6.58e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317      4 QHAGGQGAGPPQNQMQVSHGPPNMMQPSLMGIHGN-----INNQQAGSSGVPQVTLGNMQGQPQQGPPSQLMGMHQQIVP 78
Cdd:pfam09606  221 QQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSqlgmgINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMPNVMSI 300

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     79 SQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPhnqmMGPQGQVLLQQN 158
Cdd:pfam09606  301 GDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANP----MQRGQPGMMSSP 376

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    159 PMIEQIMTNQMQGNKAQFNSQNQSNVMP------GPAQIMRGPTPNmQGNMVQFTGQMSGQMLPQQGPVNNSPSQVMGIQ 232
Cdd:pfam09606  377 SPVPGQQVRQVTPNQFMRQSPQPSVPSPqgpgsqPPQSHPGGMIPS-PALIPSPSPQMSQQPAQQRTIGQDSPGGSLNTP 455

                          250
                   ....*....|....*....
gi 74216317    233 GQVLRPPGPSPHMAQQHND 251
Cdd:pfam09606  456 GQSAVNSPLNPQEEQLYRE 474
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 67-218 1.36e-05

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.81  E-value: 1.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     67 SQLMGMHQQIVPsqgqMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMtPPKQMLPQQGPQMMAPhnqm 146
Cdd:TIGR01628  369 AHLQDQFMQLQP----RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMP-TPMGPGGPLRPNGLAP---- 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74216317    147 MGPQGQVLLQQNPMIEQimtNQMQGNKAQFNSQNQSNVMPGPAQimrGPTPNMQGNMvQFTGQMSGQMLPQQ 218
Cdd:TIGR01628  440 MNAVRAPSRNAQNAAQK---PPMQPVMYPPNYQSLPLSQDLPQP---QSTASQGGQN-KKLAQVLASATPQM 504
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 60-203 1.74e-05

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.42  E-value: 1.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     60 QPQQGPPSQ-LMGMHQQIVPSQGQMAQQQGTLNPQNPMilsraqLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQ 138
Cdd:TIGR01628  384 QLPMGSPMGgAMGQPPYYGQGPQQQFNGQPLGWPRMSM------MPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKP 457

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74216317    139 MMAPHNQMMGPQGQVLLQQNPmieqimtnQMQGNKAQFNSqnqsnvMPGPAQIMRGPTPNMQGNM 203
Cdd:TIGR01628  458 PMQPVMYPPNYQSLPLSQDLP--------QPQSTASQGGQ------NKKLAQVLASATPQMQKQV 508
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 9-161 3.72e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.49  E-value: 3.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317      9 QGAGPPQNQMQVSHGPPNMMQPSLMgihgninnqqagsSGVPQVTLGNMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQG 88
Cdd:pfam09770  206 QAKKPAQQPAPAPAQPPAAPPAQQA-------------QQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSP 272

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 74216317     89 TLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAP-HNQMMGPQGQVLLQQNPMI 161
Cdd:pfam09770  273 QPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPaPAHQAHRQQGSFGRQAPII 346
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 74-257 6.25e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 47.72  E-value: 6.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     74 QQIVPSQGQMAQQQGTLNPQNPMILS--------RAQL-MPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHN 144
Cdd:pfam09770  170 AAAPAPAPQPAAQPASLPAPSRKMMSleeveaamRAQAkKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQ 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    145 QMMGPQGQV------LLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMrgPTPNMQGNMVQftgQMSGQMLPQQ 218
Cdd:pfam09770  250 PQQPQQHPGqghpvtILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQIL--QNPNRLSAARV---GYPQNPQPGV 324

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 74216317    219 GPVNNSPSQvmgiqgqvlRPPGPSPHMAQQHNDPVTTAN 257
Cdd:pfam09770  325 QPAPAHQAH---------RQQGSFGRQAPIITHPQQLAQ 354
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 532-768 3.80e-04

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 45.21  E-value: 3.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    532 PASVPPSPD-KQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPE-ASGSEV---PSVAGGPNNMPShLVVSQN 606
Cdd:pfam08580  430 PGSSPPSSViMTPVNKGSKTPSSRRGSSFDFGSSSERVINSKLRRESKLPQiASTLKQtkrPSKIPRASPNHS-GFLSTP 508

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    607 QLMMTGPKPGPSplsATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRP---------YYPQTPNNRPP 677
Cdd:pfam08580  509 SNTATSETPTPA---LRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPsrssrssstLPPVSPLSRDK 585

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    678 STEPSEISLSPERLNASIAGLFPPQINIPLPRRPNLNrgfdqqglNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVV 757
Cdd:pfam08580  586 SRSPAPTCRSVSRASRRRASRKPTRIGSPNSRTSLLD--------EPPYPKLTLSKGLPRTPRNRQSYAGTSPSRSVSVS 657

                          250
                   ....*....|.
gi 74216317    758 VNSGKQSNPGT 768
Cdd:pfam08580  658 SGLGPQTRPGT 668
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1122-1264 8.30e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 8.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1122 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVQLPSPPCTSS-PV 1200
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPADpPA 2809

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74216317  1201 VAPNPSVQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTN-SPGSSANRRSPVSSSKGK 1264
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvAPGGDVRRRPPSRSPAAK 2874
PHA03247 PHA03247
large tegument protein UL36; Provisional
 615-1252 9.74e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 9.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   615 PGPSPLSATQGATPQQP-PVNSLPSSHGH-HFPNvaAPTQTSRPKTP--------NRASPRPYYPQTPNNRPPSTEPSEI 684
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPaPRPSEPAVTSRaRRPD--APPQSARPRAPvddrgdprGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   685 SLSPERLNASIAGLFPPQINIPLPRRPNLNRGFDQQGLNPttlkaigQAPSNLTITNPPnfAAPQAhkldsvVVNSGKQS 764
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA-------QASSPPQRPRRR--AARPT------VGSLTSLA 2699

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   765 NPGTTKRASPSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQnmelprnVLVGPTPLANPPLPGSFPNNTGl 844
Cdd:PHA03247 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA-------TPGGPARPARPPTTAGPPAPAP- 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   845 nPQNPTVPVPAMGTVlednkesvnipqdsdcqnaqgrkeqvnteLKVVPTQEAKMAVPEDQSKKDGQPLDPNKLPSVEEN 924
Cdd:PHA03247 2772 -PAAPAAGPPRRLTR-----------------------------PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   925 KnlmSPAMREAPTSLSQlldnsGAPNVTIKPPGLTDLEVTPPVVSGEDLRKAsviptlqdPPSKEPSTSLSSPHSSePCS 1004
Cdd:PHA03247 2822 A---SPAGPLPPPTSAQ-----PTAPPPPPGPPPPSLPLGGSVAPGGDVRRR--------PPSRSPAAKPAAPARP-PVR 2884

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1005 TLARSELSEVSSNTA-PSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMSTVVTMPNVGN 1083
Cdd:PHA03247 2885 RLARPAVSRSTESFAlPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1084 KVMVSeGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPS-TIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSApvTP 1162
Cdd:PHA03247 2965 GALVP-GRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRvSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDA--DS 3041

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1163 NVPSSSPAPNIQTGRPLvlssratpvqlpSPPCTSSPVVAPNPsvqqvkelNPDEASPQTNTSAdQSTLPPSQPTTVVSP 1242
Cdd:PHA03247 3042 LFDSDSERSDLEALDPL------------PPEPHDPFAHEPDP--------ATPEAGARESPSS-QFGPPPLSANAALSR 3100

                         650
                  ....*....|
gi 74216317  1243 LLTNSPGSSA 1252
Cdd:PHA03247 3101 RYVRSTGRSA 3110
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 95-289 2.13e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.49  E-value: 2.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317     95 PMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAphnqmmGPQGQVLLQQNPMIEQIMTNqmqgnka 174
Cdd:TIGR01628  355 PLYVALAQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYY------GQGPQQQFNGQPLGWPRMSM------- 421

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    175 qfnsqnqsnvMPGPAQIMRGPTPNMQGNMVQFTGQMSGQM-LPQQGPVNNSPSQVMGIQGQVLRP-PGPSPHMAQQHNDP 252
Cdd:TIGR01628  422 ----------MPTPMGPGGPLRPNGLAPMNAVRAPSRNAQnAAQKPPMQPVMYPPNYQSLPLSQDlPQPQSTASQGGQNK 491

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 74216317    253 VTTAnndvNLSQMMPDVSMQQ-ASMVPPHVQSMQGNSA 289
Cdd:TIGR01628  492 KLAQ----VLASATPQMQKQVlGERLFPLVEAIEPALA 525
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1129-1355 3.90e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 3.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1129 PLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPniQTGRPLV--LSSRATPvqlPSPPCTSSPvvAPNPS 1206
Cdd:PHA03247 2643 PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--RAARPTVgsLTSLADP---PPPPPTPEP--APHAL 2715

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1207 VQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTNSPGSSANRRSPVSSSKGKGKVDKIGQILLTKAckkvTGSL 1286
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA----VASL 2791

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 74216317  1287 EKGEEQYGADGETEGPGLEITTPGLMGTEQCSTELDSKTPTPSAPTLLKMTSSPMGPSSTSTGPILPGG 1355
Cdd:PHA03247 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 1148-1351 4.51e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.60  E-value: 4.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1148 HIPQNIK-FSSAPVTPNVPSSSPAPNiqtgrplvlssraTPVQLPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSA 1226
Cdd:PTZ00449  567 HKPSKIPtLSKKPEFPKDPKHPKDPE-------------EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSP 633

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317  1227 dQSTLPPSQPTTVVSPLLTNSPGSSANRRSPVSSSKGKGKvDKIGQILLTKACK----KVTGSLEKGEEQYGADGETEGP 1302
Cdd:PTZ00449  634 -KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFK-EKFYDDYLDAAAKsketKTTVVLDESFESILKETLPETP 711

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 74216317  1303 GLEITTPGLMGTEQCSTELDSKTPtPSAPtllkmTSSPMGPSSTSTGPI 1351
Cdd:PTZ00449  712 GTPFTTPRPLPPKLPRDEEFPFEP-IGDP-----DAEQPDDIEFFTPPE 754
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 554-857 5.25e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.44  E-value: 5.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    554 SNSRKMVYQENPQNSSSSP-LGEMSSLPEASGSEVPSVAGGPNNMPSHlvVSQNQLMMTGPKPGPSPLSATQGATPQQPP 632
Cdd:pfam05109  414 TTTHKVIFSKAPESTTTSPtLNTTGFAAPNTTTGLPSSTHVPTNLTAP--ASTGPTVSTADVTSPTPAGTTSGASPVTPS 491

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    633 VNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQ-TPNNRPPS----------TEPSEISLSPERL------NASI 695
Cdd:pfam05109  492 PSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTpTPNATSPTlgktsptsavTTPTPNATSPTPAvttptpNATI 571

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    696 AGLFPPQ----INIPLPRRPNLNRGFDQQGLNpTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVVVNSGKQS---NPGT 768
Cdd:pfam05109  572 PTLGKTSptsaVTTPTPNATSPTVGETSPQAN-TTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSmslRPSS 650

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317    769 TKRASPSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQNMELPR----NVLVGPTPLANPPLPGSFPNNTGL 844
Cdd:pfam05109  651 ISETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRpgttSQASGPGNSSTSTKPGEVNVTKGT 730

                          330
                   ....*....|...
gi 74216317    845 NPQNPTVPVPAMG 857
Cdd:pfam05109  731 PPKNATSPQAPSG 743
PHA03247 PHA03247
large tegument protein UL36; Provisional
 503-716 6.51e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 6.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   503 PPRGPLNPDSQRMPVQQSgnVPVMVGLQGPASVPPSPDKQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPEA 582
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74216317   583 ---SGSEVPSVAGGPNNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPT 651
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 74216317   652 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSE----ISLSPERLNASIAGLFPPQINIPLPRRPNLNRG 716
Cdd:PHA03247 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPppppRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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