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Conserved domains on  [gi|121308454|dbj|BAF43611|]
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cytochrome b, partial (mitochondrion) [Eos squamata]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 4-302 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00119  45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00119 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00119 205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00119 285 IPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQP 343
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 4-302 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00119  45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00119 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00119 205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00119 285 IPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQP 343
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-302 1.78e-113

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 332.91  E-value: 1.78e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYlyKE----TWNTGVIL 79
Cdd:COG1290   53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  80 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLH-FLLPFMIAGLAIIHLN 158
Cdd:COG1290  131 LLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLW 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 159 FLHESGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNllGDPENFTPANPLVTPPHIKPEWYF 234
Cdd:COG1290  211 LLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYF 288

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 235 LFAYAILRSIP--NKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:COG1290  289 LPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-166 9.20e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 235.34  E-value: 9.20e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSY--LYKETWNTGVILLL 81
Cdd:cd00284   36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  82 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLH 161
Cdd:cd00284  116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                 ....*
gi 121308454 162 ESGSN 166
Cdd:cd00284  196 EQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-164 1.46e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 208.78  E-value: 1.46e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454    1 VAAQILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYG--SYLYKETWNTGVI 78
Cdd:pfam00033  24 LAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   79 LLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLN 158
Cdd:pfam00033 104 LLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183


                  ....*.
gi 121308454  159 FLHESG 164
Cdd:pfam00033 184 FLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 218-285 6.36e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 6.36e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454  218 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPISQLLF 285
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 4-302 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00119  45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00119 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00119 205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00119 285 IPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQP 343
CYTB MTH00131
cytochrome b; Provisional
 2-302 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 555.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   2 AAQILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLL 81
Cdd:MTH00131  42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  82 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLH 161
Cdd:MTH00131 122 LVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLH 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 162 ESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 241
Cdd:MTH00131 202 ETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAIL 281

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 121308454 242 RSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00131 282 RSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMP 342
CYTB MTH00074
cytochrome b; Provisional
 3-302 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 546.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   3 AQILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 82
Cdd:MTH00074  44 AQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  83 LMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHE 162
Cdd:MTH00074 124 VMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHE 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 163 SGSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 242
Cdd:MTH00074 204 TGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILR 283

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 243 SIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00074 284 SIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQP 343
CYTB MTH00100
cytochrome b; Provisional
 4-302 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 544.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00100  44 QILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00100 124 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00100 204 GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00100 284 IPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQP 342
CYTB MTH00156
cytochrome b; Provisional
 4-302 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 531.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00156  34 QIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00156 114 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00156 194 GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00156 274 IPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARP 332
CYTB MTH00191
cytochrome b; Provisional
 4-302 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 528.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00191  41 QILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00191 121 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHET 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00191 201 GSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00191 281 IPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQP 339
CYTB MTH00145
cytochrome b; Provisional
 3-302 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 514.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   3 AQILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 82
Cdd:MTH00145  44 IQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  83 LMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHE 162
Cdd:MTH00145 124 SMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHE 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 163 SGSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 242
Cdd:MTH00145 204 TGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILR 283

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 243 SIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00145 284 SIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACP 343
CYTB MTH00034
cytochrome b; Validated
 4-302 1.28e-173

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 485.36  E-value: 1.28e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00034  44 QIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLT 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00034 124 MLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQT 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00034 204 GSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00034 284 IPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQP 342
CYTB MTH00016
cytochrome b; Validated
 4-302 3.02e-172

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 481.87  E-value: 3.02e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00016  45 QILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00016 125 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQT 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00016 205 GSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00016 285 IPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRP 343
CYTB MTH00053
cytochrome b; Provisional
 4-302 4.25e-148

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 420.65  E-value: 4.25e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00053  45 QIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00053 125 ILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHED 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00053 205 GSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00053 285 IPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQP 343
CYTB MTH00022
cytochrome b; Validated
 4-302 2.19e-147

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 418.72  E-value: 2.19e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00022  43 QIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLT 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00022 123 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVD 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00022 203 GSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00022 283 IPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQV 341
CYTB MTH00224
cytochrome b; Provisional
 4-302 1.14e-142

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 407.00  E-value: 1.14e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00224  45 QVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00224 125 MATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQT 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00224 205 GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00224 285 IPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRP 343
CYTB MTH00033
cytochrome b; Provisional
 4-302 1.59e-116

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 340.76  E-value: 1.59e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00033  41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00033 121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLAL--FYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 241
Cdd:MTH00033 201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 121308454 242 RSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00033 281 RSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAP 341
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-302 1.78e-113

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 332.91  E-value: 1.78e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYlyKE----TWNTGVIL 79
Cdd:COG1290   53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  80 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLH-FLLPFMIAGLAIIHLN 158
Cdd:COG1290  131 LLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLW 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 159 FLHESGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNllGDPENFTPANPLVTPPHIKPEWYF 234
Cdd:COG1290  211 LLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYF 288

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 235 LFAYAILRSIP--NKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:COG1290  289 LPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
CYTB MTH00086
cytochrome b; Provisional
 4-302 5.53e-100

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 297.24  E-value: 5.53e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00086  33 QILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00086 113 MMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHST 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSNCDKIPFHPYFSLKDLLGFaIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 243
Cdd:MTH00086 193 GSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 244 IPNKLGGVLALAASVLILFLSPLLHKSkqrTMAFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:MTH00086 272 IPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCL 327
CYTB MTH00046
cytochrome b; Validated
 4-300 4.49e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 246.43  E-value: 4.49e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 83
Cdd:MTH00046  35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  84 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLHES 163
Cdd:MTH00046 115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 164 GSNNPLGISSN-CDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 242
Cdd:MTH00046 195 GSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 121308454 243 SIPNKLGGvLALAASVLILFLSPLLHKSKqrtmAFRPISQLLFWTLAANLFILTWVGS 300
Cdd:MTH00046 275 SINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGG 327
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-166 9.20e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 235.34  E-value: 9.20e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSY--LYKETWNTGVILLL 81
Cdd:cd00284   36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  82 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLNFLH 161
Cdd:cd00284  116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                 ....*
gi 121308454 162 ESGSN 166
Cdd:cd00284  196 EQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-164 1.46e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 208.78  E-value: 1.46e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454    1 VAAQILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYG--SYLYKETWNTGVI 78
Cdd:pfam00033  24 LAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   79 LLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLHFLLPFMIAGLAIIHLN 158
Cdd:pfam00033 104 LLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183


                  ....*.
gi 121308454  159 FLHESG 164
Cdd:pfam00033 184 FLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 167-302 6.61e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.04  E-value: 6.61e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454 167 NPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFYPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 246
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 121308454 247 KLGGVLALAASVLILFLSPLLHKSKQRTMaFRPISQLLFWTLAANLFILTWVGSQP 302
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQP 135
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
48-213 2.88e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 151.24  E-value: 2.88e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   48 SFFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 125
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  126 GGFSVDNPTLTRFFGLHF-LLPFMIAGLAIIHLNFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLAL 204
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 121308454  205 FYPNLLGDP 213
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
218-302 8.34e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 137.22  E-value: 8.34e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  218 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWTLAANLFILTW 297
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80


                  ....*
gi 121308454  298 VGSQP 302
Cdd:pfam00032  81 LGKQP 85
PRK03735 PRK03735
cytochrome b6; Provisional
 4-169 2.09e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 116.73  E-value: 2.09e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKE--TWNTGVILLL 81
Cdd:PRK03735  55 QILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFF 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  82 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLH-FLLPFMIAGLAIIHLNFL 160
Cdd:PRK03735 135 VTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMI 214


                 ....*....
gi 121308454 161 HESGSNNPL 169
Cdd:PRK03735 215 RKQGISGPL 223
petB CHL00070
cytochrome b6
 4-169 4.16e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 110.58  E-value: 4.16e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454   4 QILTGLLVATHYTGDTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGFYYGSYLYKE--TWNTGVILLL 81
Cdd:CHL00070  47 QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAV 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121308454  82 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFGLH-FLLPFMIAGLAIIHLNFL 160
Cdd:CHL00070 127 LTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMI 206


                 ....*....
gi 121308454 161 HESGSNNPL 169
Cdd:CHL00070 207 RKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 218-285 2.28e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.17  E-value: 2.28e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 218 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHK-SKQRTMAFRPISQLLF 285
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 218-285 1.91e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 1.91e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454 218 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPISQLLF 285
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 218-285 6.36e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 6.36e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 121308454  218 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPISQLLF 285
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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