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Conserved domains on  [gi|292677791|dbj|BAI99237|]
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APS reductase alpha subunit, partial [Oligobrachia mashikoi endosymbiont G]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAD_binding_2 super family cl46878
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 1-119 2.21e-66

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


The actual alignment was detected with superfamily member PRK06854:

Pssm-ID: 481218 [Multi-domain]  Cd Length: 608  Bit Score: 210.55  E-value: 2.21e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791   1 ESYKWIVAEAAKKALGmENIEERIFVVKLVNDKNdsnRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSVGEGT 80
Cdd:PRK06854 132 ESYKPIVAEAAKKALG-DNVLNRVFITDLLVDDN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGR 207

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 292677791  81 GRAWYPVWNAGSTYSMAAEAGAELTLMENRFVPTRFKDG 119
Cdd:PRK06854 208 GRMWYPPFNTGSGYAMGIRAGAEMTTFENRFIPLRFKDG 246
 
Name Accession Description Interval E-value
PRK06854 PRK06854
adenylyl-sulfate reductase subunit alpha;
1-119 2.21e-66

adenylyl-sulfate reductase subunit alpha;


Pssm-ID: 235879 [Multi-domain]  Cd Length: 608  Bit Score: 210.55  E-value: 2.21e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791   1 ESYKWIVAEAAKKALGmENIEERIFVVKLVNDKNdsnRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSVGEGT 80
Cdd:PRK06854 132 ESYKPIVAEAAKKALG-DNVLNRVFITDLLVDDN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGR 207

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 292677791  81 GRAWYPVWNAGSTYSMAAEAGAELTLMENRFVPTRFKDG 119
Cdd:PRK06854 208 GRMWYPPFNTGSGYAMGIRAGAEMTTFENRFIPLRFKDG 246
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 12-114 2.63e-11

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 2.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  12 KKALGMENIE--ERIFVVKLVNDKNdsNRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFR-----PRSVGEGtgraw 84
Cdd:COG0029  138 EAVRAHPNITvlENHFAVDLITDAD--GRCVGAYVLDEKTGEVETIRAKAVVLATGGAGQLYAyttnpDVATGDG----- 210

                         90       100       110
                 ....*....|....*....|....*....|...
gi 292677791  85 ypvwnagstYSMAAEAGAELTLMEnrFV---PT 114
Cdd:COG0029  211 ---------IAMAYRAGARLADME--FVqfhPT 232
 
Name Accession Description Interval E-value
PRK06854 PRK06854
adenylyl-sulfate reductase subunit alpha;
1-119 2.21e-66

adenylyl-sulfate reductase subunit alpha;


Pssm-ID: 235879 [Multi-domain]  Cd Length: 608  Bit Score: 210.55  E-value: 2.21e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791   1 ESYKWIVAEAAKKALGmENIEERIFVVKLVNDKNdsnRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSVGEGT 80
Cdd:PRK06854 132 ESYKPIVAEAAKKALG-DNVLNRVFITDLLVDDN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGR 207

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 292677791  81 GRAWYPVWNAGSTYSMAAEAGAELTLMENRFVPTRFKDG 119
Cdd:PRK06854 208 GRMWYPPFNTGSGYAMGIRAGAEMTTFENRFIPLRFKDG 246
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 12-114 2.63e-11

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 2.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  12 KKALGMENIE--ERIFVVKLVNDKNdsNRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFR-----PRSVGEGtgraw 84
Cdd:COG0029  138 EAVRAHPNITvlENHFAVDLITDAD--GRCVGAYVLDEKTGEVETIRAKAVVLATGGAGQLYAyttnpDVATGDG----- 210

                         90       100       110
                 ....*....|....*....|....*....|...
gi 292677791  85 ypvwnagstYSMAAEAGAELTLMEnrFV---PT 114
Cdd:COG0029  211 ---------IAMAYRAGARLADME--FVqfhPT 232
PRK08275 PRK08275
putative oxidoreductase; Provisional
 20-108 4.93e-10

putative oxidoreductase; Provisional


Pssm-ID: 181346 [Multi-domain]  Cd Length: 554  Bit Score: 55.44  E-value: 4.93e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  20 IEERIFVVKLVNDKNdsNRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSvGEGTGRAWYPVwNAGSTYSMAAE 99
Cdd:PRK08275 154 ITNRIMATRLLTDAD--GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPAS-GYLFGTYENPT-NAGDGYAMAYH 229


                 ....*....
gi 292677791 100 AGAELTLME 108
Cdd:PRK08275 230 AGAELANLE 238
PRK13800 PRK13800
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
20-108 5.37e-10

fumarate reductase/succinate dehydrogenase flavoprotein subunit;


Pssm-ID: 237512 [Multi-domain]  Cd Length: 897  Bit Score: 55.24  E-value: 5.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  20 IEERIFVVKLVNDkndSNRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSvGEGTGRAWYPVwNAGSTYSMAAE 99
Cdd:PRK13800 160 IENRLMPVRVLTE---GGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPAS-GYLYGTYENPT-NAGDGYSMAYH 234


                 ....*....
gi 292677791 100 AGAELTLME 108
Cdd:PRK13800 235 AGAELSGIE 243
sdhA PRK06263
succinate dehydrogenase flavoprotein subunit; Reviewed
 20-114 9.90e-10

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 235758 [Multi-domain]  Cd Length: 543  Bit Score: 54.60  E-value: 9.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  20 IEERIFVVKLVNDKNdsNRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSvgegtgrawYPVWNAGSTYSMAAE 99
Cdd:PRK06263 151 ILEEVMAIKLIVDEN--REVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITS---------NPIQKTGDGFAIAYR 219

                         90
                 ....*....|....*.
gi 292677791 100 AGAELTLMEN-RFVPT 114
Cdd:PRK06263 220 AGAELIDMEMvQFHPT 235
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 20-114 3.15e-07

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 47.14  E-value: 3.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  20 IEERIFVVKLVNDKNdsnRVAGAVGFSvRENKVVVYKAKAILLAAGGCVNIFRPRSVGEGTGRAWYPVWNAGST---YSM 96
Cdd:COG1053  151 IFTETEVLDLIVDDG---RVVGVVARD-RTGEIVRIRAKAVVLATGGFGRNYEMRAEYLPEAEGALSTNAPGNTgdgIAM 226

                         90
                 ....*....|....*....
gi 292677791  97 AAEAGAELTLMENR-FVPT 114
Cdd:COG1053  227 ALRAGAALADMEFVqFHPT 245
sdhA PRK06452
succinate dehydrogenase flavoprotein subunit; Reviewed
 25-104 1.95e-05

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 180567 [Multi-domain]  Cd Length: 566  Bit Score: 42.18  E-value: 1.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  25 FVVKLVNDKNdsnRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRprsvgeGTGRAWYpvwNAGSTYSMAAEAGAEL 104
Cdd:PRK06452 158 FSLDLVTDNK---KVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYR------HTTNSYI---NTGDGFGIALRAGAAL 225
PRK08071 PRK08071
L-aspartate oxidase; Provisional
 49-119 8.45e-05

L-aspartate oxidase; Provisional


Pssm-ID: 236147 [Multi-domain]  Cd Length: 510  Bit Score: 40.36  E-value: 8.45e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 292677791  49 ENKVVVYKAKAILLAAGGCVNIFRPRSvgegtgrawypvwNA----GSTYSMAAEAGAELTLME-NRFVPTR-FKDG 119
Cdd:PRK08071 171 EGKLKRYYADYVVLASGGCGGLYAFTS-------------NDktitGDGLAMAYRAGAELVDLEfIQFHPTMlYANG 234
sdhA PRK06069
succinate dehydrogenase/fumarate reductase flavoprotein subunit;
12-114 8.39e-04

succinate dehydrogenase/fumarate reductase flavoprotein subunit;


Pssm-ID: 235689 [Multi-domain]  Cd Length: 577  Bit Score: 37.34  E-value: 8.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  12 KKALGMENIE--ERIFVVKLVNDkndSNRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRprsvgeGTGRAWYpvwN 89
Cdd:PRK06069 145 SRALRFDNIHfyDEHFVTSLIVE---NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG------FTTYAHS---V 212

                         90       100
                 ....*....|....*....|....*.
gi 292677791  90 AGSTYSMAAEAGAELTLME-NRFVPT 114
Cdd:PRK06069 213 TGDGLAIAYRAGIPLKDMEfVQFHPT 238
PRK09231 PRK09231
fumarate reductase flavoprotein subunit; Validated
 25-114 4.93e-03

fumarate reductase flavoprotein subunit; Validated


Pssm-ID: 236421 [Multi-domain]  Cd Length: 582  Bit Score: 35.38  E-value: 4.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292677791  25 FVVKLVNDKNdsnRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRSVG---EGTGRAwypvwnagstysMAAEAG 101
Cdd:PRK09231 156 FVLDILVDDG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGgivTGDGMG------------MAYRHG 220

                         90
                 ....*....|....*.
gi 292677791 102 AELTLMEnrFV---PT 114
Cdd:PRK09231 221 VPLRDME--FVqyhPT 234
PRK08626 PRK08626
fumarate reductase flavoprotein subunit; Provisional
 11-83 6.66e-03

fumarate reductase flavoprotein subunit; Provisional


Pssm-ID: 181507 [Multi-domain]  Cd Length: 657  Bit Score: 34.95  E-value: 6.66e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 292677791  11 AKKALGME-NIEERIFVVKLVNDKNdsnRVAGAVGFSVRENKVVVYKAKAILLAAGGCVNIFRPRS---VGEGTGRA 83
Cdd:PRK08626 165 DNEAIKLGvPVHDRKEAIALIHDGK---RCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTnavICEGIGAA 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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