NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|943491537|dbj|BAT23989|]
View 

O-antigen and lipid-linked capsular repeat unit polymerase [Klebsiella sp. 1756/51]

Protein Classification

EpsG family protein( domain architecture ID 10632861)

EpsG family protein similar to Bacillus subtilis transmembrane protein EpsG, which is involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
EpsG pfam14897
EpsG family; This family of proteins are related to the EpsG protein from B. subtilis. These ...
 19-319 5.77e-12

EpsG family; This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.


:

Pssm-ID: 434295  Cd Length: 325  Bit Score: 65.81  E-value: 5.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537   19 KKLFYVSFPFVALFFSMTFGYGYDWINYNDFYYDSIYTT---TLPFEPGLFYLMKLFVSFDFPFKYLVFIIYLFIYYCCY 95
Cdd:pfam14897   1 LILFLIVFLFLFLLAGFRYGVGTDWFSYVEIYELILYLSylfLFGFEPGYVLLNSLVKSFGNNYQFFLFILALITLILLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537   96 SFCKKM--NNPMIAFYCMFSLLGFYMFSEQFRQGIALGIILLGLSRTNKEYPWKILPYIIVASFFHVSALTALLYNLIfi 173
Cdd:pfam14897  81 YFIRKYskNPFLLALLLFLLLLYFLLSMNQIRQGIAISIILLALAYLIKKKWKKFLLLVILASLFHSSAIIFLPLYFI-- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537  174 dneRRLKLNVIFITLFIASLLIVLSSPGIISFIPYIGDKVSDYSSLLGNNGFSFLLYMLQQKQSYVFLALLIISIIIFKQ 253
Cdd:pfam14897 159 ---LNKKLKKKVILLIFSFILLLFLFFDNILSLLSPLLISERYASYLESDYYGGGTGIIVGLLFLLFILFLLLLKYIREE 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537  254 QKSKKILWAVLSTY----FLLLTKMAQFLVRFGYYFVPFIVMGLDNYFESKSKKGYLYAYKTIFLLIIFI 319
Cdd:pfam14897 236 KKKSDKFFLNILLFglilFLLLLFLSVIFDRLALYFSIFIIIFLPPILKKIFKRKKRKLIVLILIIFLLL 305
 
Name Accession Description Interval E-value
EpsG pfam14897
EpsG family; This family of proteins are related to the EpsG protein from B. subtilis. These ...
 19-319 5.77e-12

EpsG family; This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.


Pssm-ID: 434295  Cd Length: 325  Bit Score: 65.81  E-value: 5.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537   19 KKLFYVSFPFVALFFSMTFGYGYDWINYNDFYYDSIYTT---TLPFEPGLFYLMKLFVSFDFPFKYLVFIIYLFIYYCCY 95
Cdd:pfam14897   1 LILFLIVFLFLFLLAGFRYGVGTDWFSYVEIYELILYLSylfLFGFEPGYVLLNSLVKSFGNNYQFFLFILALITLILLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537   96 SFCKKM--NNPMIAFYCMFSLLGFYMFSEQFRQGIALGIILLGLSRTNKEYPWKILPYIIVASFFHVSALTALLYNLIfi 173
Cdd:pfam14897  81 YFIRKYskNPFLLALLLFLLLLYFLLSMNQIRQGIAISIILLALAYLIKKKWKKFLLLVILASLFHSSAIIFLPLYFI-- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537  174 dneRRLKLNVIFITLFIASLLIVLSSPGIISFIPYIGDKVSDYSSLLGNNGFSFLLYMLQQKQSYVFLALLIISIIIFKQ 253
Cdd:pfam14897 159 ---LNKKLKKKVILLIFSFILLLFLFFDNILSLLSPLLISERYASYLESDYYGGGTGIIVGLLFLLFILFLLLLKYIREE 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537  254 QKSKKILWAVLSTY----FLLLTKMAQFLVRFGYYFVPFIVMGLDNYFESKSKKGYLYAYKTIFLLIIFI 319
Cdd:pfam14897 236 KKKSDKFFLNILLFglilFLLLLFLSVIFDRLALYFSIFIIIFLPPILKKIFKRKKRKLIVLILIIFLLL 305
 
Name Accession Description Interval E-value
EpsG pfam14897
EpsG family; This family of proteins are related to the EpsG protein from B. subtilis. These ...
 19-319 5.77e-12

EpsG family; This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.


Pssm-ID: 434295  Cd Length: 325  Bit Score: 65.81  E-value: 5.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537   19 KKLFYVSFPFVALFFSMTFGYGYDWINYNDFYYDSIYTT---TLPFEPGLFYLMKLFVSFDFPFKYLVFIIYLFIYYCCY 95
Cdd:pfam14897   1 LILFLIVFLFLFLLAGFRYGVGTDWFSYVEIYELILYLSylfLFGFEPGYVLLNSLVKSFGNNYQFFLFILALITLILLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537   96 SFCKKM--NNPMIAFYCMFSLLGFYMFSEQFRQGIALGIILLGLSRTNKEYPWKILPYIIVASFFHVSALTALLYNLIfi 173
Cdd:pfam14897  81 YFIRKYskNPFLLALLLFLLLLYFLLSMNQIRQGIAISIILLALAYLIKKKWKKFLLLVILASLFHSSAIIFLPLYFI-- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537  174 dneRRLKLNVIFITLFIASLLIVLSSPGIISFIPYIGDKVSDYSSLLGNNGFSFLLYMLQQKQSYVFLALLIISIIIFKQ 253
Cdd:pfam14897 159 ---LNKKLKKKVILLIFSFILLLFLFFDNILSLLSPLLISERYASYLESDYYGGGTGIIVGLLFLLFILFLLLLKYIREE 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491537  254 QKSKKILWAVLSTY----FLLLTKMAQFLVRFGYYFVPFIVMGLDNYFESKSKKGYLYAYKTIFLLIIFI 319
Cdd:pfam14897 236 KKKSDKFFLNILLFglilFLLLLFLSVIFDRLALYFSIFIIIFLPPILKKIFKRKKRKLIVLILIIFLLL 305
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH