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Conserved domains on  [gi|965675592|dbj|BAU03638|]
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hypothetical protein VIGAN_UM147000 [Vigna angularis var. angularis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 184-920 1.83e-156

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 482.04  E-value: 1.83e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 184 LNTYTSLGKLDNACQLFAQMPisTRNVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIASLAALHH 263
Cdd:PLN03077 128 LSMFVRFGELVHAWYVFGKMP--ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 264 GFLVHALAIKQGFDSSIYVASSLINMYGKCAMLDAARQVFDAISHKNLIVWNTMLGIYSQNVYLSNVMELFSDMTICGVH 343
Cdd:PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 344 PDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFELMSCRDHVSWNAIIVGYV 423
Cdd:PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 424 QEEEEAVAFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQLHCLSVKLGLETNLFAGSSLIDMYSKCGDSEDAQK 503
Cdd:PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 504 IYSRMPERSVVSfnaliagyapknikeaislihemlilglkpseitfvsiidvckgsakvilgmqihcvvvkrgllcgse 583
Cdd:PLN03077 446 VFHNIPEKDVIS-------------------------------------------------------------------- 457

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 584 flgtsllgmymdsqrladasvlfsefsnlkstvmWTALISGYTQNECSDVALNLYQEMRGnSILPDQATFVTVLRASALL 663
Cdd:PLN03077 458 ----------------------------------WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 664 SSLHDGREIHSLIFHTGFDLDELTGSSLVDMYAKCGDVKSAVQVFHelTIKKDVISWNSMIVGFAKNGYAESALKVFNEM 743
Cdd:PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 744 AQSCITPDKVTFLGVLTACSHAGWVYEGLQVFHIMVNCYGIEPRGDHYACMVDLLGRWGFLKEAEEFIDKIEVEPNAMIW 823
Cdd:PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 824 ANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKDIQKMPGCSWIVVGQITNLF 903
Cdd:PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740

                        730
                 ....*....|....*..
gi 965675592 904 VAGDKSHPSCDEISLAL 920
Cdd:PLN03077 741 LTDDESHPQIKEINTVL 757
PLN03081 super family cl33631
pentatricopeptide (PPR) repeat-containing protein; Provisional
 37-311 6.19e-19

pentatricopeptide (PPR) repeat-containing protein; Provisional


The actual alignment was detected with superfamily member PLN03081:

Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 92.24  E-value: 6.19e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  37 WNSLLRMHSTHGLPQSVLRCFASFLNSGHSPDQFTFAITLSACAKLHNVELGRAVHCCIIKRGIQSASFCHGALIHLYVN 116
Cdd:PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 117 SHSLTSARTLFDAApsPHLNPVSWTSLISGYVQAGLPQQALHVFDK-IRTTVSPasfpllDPVALVTVLNTYTSLGKLDN 195
Cdd:PLN03081 373 WGRMEDARNVFDRM--PRKNLISWNALIAGYGNHGRGTKAVEMFERmIAEGVAP------NHVTFLAVLSACRYSGLSEQ 444

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 196 ACQLFAQMPISTR---NVVAWNVMISGHAKRGHYQEALAFFRqmskhgvKSSRSTLASVLSAIASLAALHHGFLVHALAI 272
Cdd:PLN03081 445 GWEIFQSMSENHRikpRAMHYACMIELLGREGLLDEAYAMIR-------RAPFKPTVNMWAALLTACRIHKNLELGRLAA 517

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 965675592 273 KQGFDS-----SIYVAssLINMYGKCAMLDAARQVFDAISHKNL 311
Cdd:PLN03081 518 EKLYGMgpeklNNYVV--LLNLYNSSGRQAEAAKVVETLKRKGL 559
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 511-557 1.51e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.51e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 965675592  511 RSVVSFNALIAGYAPKN-IKEAISLIHEMLILGLKPSEITFVSIIDVC 557
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGkVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 184-920 1.83e-156

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 482.04  E-value: 1.83e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 184 LNTYTSLGKLDNACQLFAQMPisTRNVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIASLAALHH 263
Cdd:PLN03077 128 LSMFVRFGELVHAWYVFGKMP--ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 264 GFLVHALAIKQGFDSSIYVASSLINMYGKCAMLDAARQVFDAISHKNLIVWNTMLGIYSQNVYLSNVMELFSDMTICGVH 343
Cdd:PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 344 PDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFELMSCRDHVSWNAIIVGYV 423
Cdd:PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 424 QEEEEAVAFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQLHCLSVKLGLETNLFAGSSLIDMYSKCGDSEDAQK 503
Cdd:PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 504 IYSRMPERSVVSfnaliagyapknikeaislihemlilglkpseitfvsiidvckgsakvilgmqihcvvvkrgllcgse 583
Cdd:PLN03077 446 VFHNIPEKDVIS-------------------------------------------------------------------- 457

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 584 flgtsllgmymdsqrladasvlfsefsnlkstvmWTALISGYTQNECSDVALNLYQEMRGnSILPDQATFVTVLRASALL 663
Cdd:PLN03077 458 ----------------------------------WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 664 SSLHDGREIHSLIFHTGFDLDELTGSSLVDMYAKCGDVKSAVQVFHelTIKKDVISWNSMIVGFAKNGYAESALKVFNEM 743
Cdd:PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 744 AQSCITPDKVTFLGVLTACSHAGWVYEGLQVFHIMVNCYGIEPRGDHYACMVDLLGRWGFLKEAEEFIDKIEVEPNAMIW 823
Cdd:PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 824 ANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKDIQKMPGCSWIVVGQITNLF 903
Cdd:PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740

                        730
                 ....*....|....*..
gi 965675592 904 VAGDKSHPSCDEISLAL 920
Cdd:PLN03077 741 LTDDESHPQIKEINTVL 757
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 37-311 6.19e-19

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 92.24  E-value: 6.19e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  37 WNSLLRMHSTHGLPQSVLRCFASFLNSGHSPDQFTFAITLSACAKLHNVELGRAVHCCIIKRGIQSASFCHGALIHLYVN 116
Cdd:PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 117 SHSLTSARTLFDAApsPHLNPVSWTSLISGYVQAGLPQQALHVFDK-IRTTVSPasfpllDPVALVTVLNTYTSLGKLDN 195
Cdd:PLN03081 373 WGRMEDARNVFDRM--PRKNLISWNALIAGYGNHGRGTKAVEMFERmIAEGVAP------NHVTFLAVLSACRYSGLSEQ 444

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 196 ACQLFAQMPISTR---NVVAWNVMISGHAKRGHYQEALAFFRqmskhgvKSSRSTLASVLSAIASLAALHHGFLVHALAI 272
Cdd:PLN03081 445 GWEIFQSMSENHRikpRAMHYACMIELLGREGLLDEAYAMIR-------RAPFKPTVNMWAALLTACRIHKNLELGRLAA 517

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 965675592 273 KQGFDS-----SIYVAssLINMYGKCAMLDAARQVFDAISHKNL 311
Cdd:PLN03081 518 EKLYGMgpeklNNYVV--LLNLYNSSGRQAEAAKVVETLKRKGL 559
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 833-894 2.46e-17

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 76.81  E-value: 2.46e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 965675592  833 HGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKDIQKMPGCSWI 894
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 511-557 1.51e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.51e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 965675592  511 RSVVSFNALIAGYAPKN-IKEAISLIHEMLILGLKPSEITFVSIIDVC 557
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGkVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 791-884 2.65e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 2.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 791 YACMVDLLGRWGFLKEAEEFIDK-IEVEPNAMIWANLLGACRIH-GDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASG 868
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGLALLKaGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                         90
                 ....*....|....*.
gi 965675592 869 LWDEARSLRRTMMQKD 884
Cdd:COG4783  121 RPDEAIAALEKALELD 136
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 211-242 1.83e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.83e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 965675592  211 VAWNVMISGHAKRGHYQEALAFFRQMSKHGVK 242
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 33-81 8.65e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.11  E-value: 8.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 965675592   33 NASVWNSLLRMHSTHGLPQSVLRCFASFLNSGHSPDQFTFAITLSACAK 81
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 184-920 1.83e-156

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 482.04  E-value: 1.83e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 184 LNTYTSLGKLDNACQLFAQMPisTRNVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIASLAALHH 263
Cdd:PLN03077 128 LSMFVRFGELVHAWYVFGKMP--ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 264 GFLVHALAIKQGFDSSIYVASSLINMYGKCAMLDAARQVFDAISHKNLIVWNTMLGIYSQNVYLSNVMELFSDMTICGVH 343
Cdd:PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 344 PDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFELMSCRDHVSWNAIIVGYV 423
Cdd:PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 424 QEEEEAVAFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQLHCLSVKLGLETNLFAGSSLIDMYSKCGDSEDAQK 503
Cdd:PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 504 IYSRMPERSVVSfnaliagyapknikeaislihemlilglkpseitfvsiidvckgsakvilgmqihcvvvkrgllcgse 583
Cdd:PLN03077 446 VFHNIPEKDVIS-------------------------------------------------------------------- 457

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 584 flgtsllgmymdsqrladasvlfsefsnlkstvmWTALISGYTQNECSDVALNLYQEMRGnSILPDQATFVTVLRASALL 663
Cdd:PLN03077 458 ----------------------------------WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 664 SSLHDGREIHSLIFHTGFDLDELTGSSLVDMYAKCGDVKSAVQVFHelTIKKDVISWNSMIVGFAKNGYAESALKVFNEM 743
Cdd:PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 744 AQSCITPDKVTFLGVLTACSHAGWVYEGLQVFHIMVNCYGIEPRGDHYACMVDLLGRWGFLKEAEEFIDKIEVEPNAMIW 823
Cdd:PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 824 ANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKDIQKMPGCSWIVVGQITNLF 903
Cdd:PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740

                        730
                 ....*....|....*..
gi 965675592 904 VAGDKSHPSCDEISLAL 920
Cdd:PLN03077 741 LTDDESHPQIKEINTVL 757
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 348-929 7.79e-104

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 338.38  E-value: 7.79e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 348 TYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFELMSCRDHVSWNAIIVGYVQEEE 427
Cdd:PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 428 EAVAFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQLHCLSVKLGLETNLFAGSSLIDMYSKCGDSEDAQKIYSR 507
Cdd:PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 508 MPERSVVSFNALIAGYApknikeaislihemlilglkpseitfvsiidvckgsakvilgmqihcvvvkrgllcgseflgt 587
Cdd:PLN03081 285 MPEKTTVAWNSMLAGYA--------------------------------------------------------------- 301

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 588 sLLGmymdsqrladasvlfsefsnlkstvmwtalisgytqneCSDVALNLYQEMRGNSILPDQATFVTVLRASALLSSLH 667
Cdd:PLN03081 302 -LHG--------------------------------------YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 668 DGREIHSLIFHTGFDLDELTGSSLVDMYAKCGDVKSAVQVFHELTIKkDVISWNSMIVGFAKNGYAESALKVFNEMAQSC 747
Cdd:PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 748 ITPDKVTFLGVLTACSHAGWVYEGLQVFHIMVNCYGIEPRGDHYACMVDLLGRWGFLKEAEEFIDKIEVEPNAMIWANLL 827
Cdd:PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 828 GACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKDIQKMPGCSWIVVGQITNLFVAGD 907
Cdd:PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581

                        570       580
                 ....*....|....*....|..
gi 965675592 908 KSHPSCDEISLALKHLTALIKD 929
Cdd:PLN03081 582 RLHPQSREIYQKLDELMKEISE 603
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 183-603 3.04e-53

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 198.17  E-value: 3.04e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 183 VLNTYTSLGKLDNACQLFAQMPisTRNVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIASLAALH 262
Cdd:PLN03081 164 VLLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 263 HGFLVHALAIKQGFDSSIYVASSLINMYGKCAMLDAARQVFDAISHKNLIVWNTMLGIYSQNVYLSNVMELFSDMTICGV 342
Cdd:PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 343 HPDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFELMSCRDHVSWNAIIVGY 422
Cdd:PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 423 VQEEEEAVAFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQL-HCLSVKLGLETNLFAGSSLIDMYSKCGDSEDA 501
Cdd:PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIfQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 502 QKIYSRMPERSVVS-FNALIAGyapknikeaiSLIHEMLILGlkpseitfvsiidvcKGSAKVILGMqihcvvvkrgllc 580
Cdd:PLN03081 482 YAMIRRAPFKPTVNmWAALLTA----------CRIHKNLELG---------------RLAAEKLYGM------------- 523

                        410       420
                 ....*....|....*....|....*
gi 965675592 581 GSEFLGT--SLLGMYMDSQRLADAS 603
Cdd:PLN03081 524 GPEKLNNyvVLLNLYNSSGRQAEAA 548
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 33-357 8.00e-31

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 129.99  E-value: 8.00e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  33 NASVWNSLLRMHSTHGLPQSVLRCFASFLNSGHSPDQFTFAITLSACAKLHNVELGRAVHCCIIKRGIQSASFCHGALIH 112
Cdd:PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 113 LyvnshsltsartlfdaapsphlnpvswtslisgyvqaglpqqalhvfdkirttvspasfplldpvalvtvlntYTSLGK 192
Cdd:PLN03081 268 M-------------------------------------------------------------------------YSKCGD 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 193 LDNACQLFAQMPISTrnVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIASLAALHHGFLVHALAI 272
Cdd:PLN03081 275 IEDARCVFDGMPEKT--TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 273 KQGFDSSIYVASSLINMYGKCAMLDAARQVFDAISHKNLIVWNTMLGIYSQNVYLSNVMELFSDMTICGVHPDEFTYTSI 352
Cdd:PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432


                 ....*
gi 965675592 353 LSSCA 357
Cdd:PLN03081 433 LSACR 437
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 37-311 6.19e-19

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 92.24  E-value: 6.19e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  37 WNSLLRMHSTHGLPQSVLRCFASFLNSGHSPDQFTFAITLSACAKLHNVELGRAVHCCIIKRGIQSASFCHGALIHLYVN 116
Cdd:PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 117 SHSLTSARTLFDAApsPHLNPVSWTSLISGYVQAGLPQQALHVFDK-IRTTVSPasfpllDPVALVTVLNTYTSLGKLDN 195
Cdd:PLN03081 373 WGRMEDARNVFDRM--PRKNLISWNALIAGYGNHGRGTKAVEMFERmIAEGVAP------NHVTFLAVLSACRYSGLSEQ 444

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 196 ACQLFAQMPISTR---NVVAWNVMISGHAKRGHYQEALAFFRqmskhgvKSSRSTLASVLSAIASLAALHHGFLVHALAI 272
Cdd:PLN03081 445 GWEIFQSMSENHRikpRAMHYACMIELLGREGLLDEAYAMIR-------RAPFKPTVNMWAALLTACRIHKNLELGRLAA 517

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 965675592 273 KQGFDS-----SIYVAssLINMYGKCAMLDAARQVFDAISHKNL 311
Cdd:PLN03081 518 EKLYGMgpeklNNYVV--LLNLYNSSGRQAEAAKVVETLKRKGL 559
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 833-894 2.46e-17

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 76.81  E-value: 2.46e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 965675592  833 HGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKDIQKMPGCSWI 894
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 341-660 2.86e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 80.69  E-value: 2.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  341 GVHPDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFELMSCR----DHVSWN 416
Cdd:PLN03218  467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKnvkpDRVVFN 546

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  417 AIIVGYVQEEEEAVAFSLFQRMNLDG--VVPDEVSLASILSACGNI----KVLDVGQQLHCLSVKLGLETNLFAGSSlid 490
Cdd:PLN03218  547 ALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAgqvdRAKEVYQMIHEYNIKGTPEVYTIAVNS--- 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  491 mYSKCGDSEDAQKIYSRMPERSV----VSFNALI--AGYApKNIKEAISLIHEMLILGLKPSEITFVSIIDVCkGSAKvi 564
Cdd:PLN03218  624 -CSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVdvAGHA-GDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-SNAK-- 698

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  565 lgmqihcvvvkrgllcgseflgtsllgmymDSQRladASVLFSEF--SNLKSTV-MWTALISGYTQNECSDVALNLYQEM 641
Cdd:PLN03218  699 ------------------------------NWKK---ALELYEDIksIKLRPTVsTMNALITALCEGNQLPKALEVLSEM 745

                         330
                  ....*....|....*....
gi 965675592  642 RGNSILPDQATFVTVLRAS 660
Cdd:PLN03218  746 KRLGLCPNTITYSILLVAS 764
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 222-569 1.78e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 65.28  E-value: 1.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  222 KRGHYQEALAFFRQMSKhgvkSSRSTLASVLSAIASLAALHHGFLVHALAIKQGFDSSIYVASSLINMYGKCAMLDAarq 301
Cdd:PLN03218  418 KQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--- 490

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  302 vfdaishknlivwntmlgiysqnvylsnVMELFSDMTICGVHPDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNL 381
Cdd:PLN03218  491 ----------------------------MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  382 FVNNSLIDMYAKAGALTEAAKQFELMSCR------DHVSWNAII-----VGYVQEEEE-------------------AV- 430
Cdd:PLN03218  543 VVFNALISACGQSGAVDRAFDVLAEMKAEthpidpDHITVGALMkacanAGQVDRAKEvyqmiheynikgtpevytiAVn 622

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  431 ----------AFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQLHCLSVKLGLETNLFAGSSLIDMYSKCGDSED 500
Cdd:PLN03218  623 scsqkgdwdfALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 965675592  501 A----QKIYSRMPERSVVSFNALIAGYAPKN-IKEAISLIHEMLILGLKPSEITFVSIIDVCKGSAKVILGMQI 569
Cdd:PLN03218  703 AlelyEDIKSIKLRPTVSTMNALITALCEGNqLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 715-764 2.22e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.91  E-value: 2.22e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 965675592  715 KDVISWNSMIVGFAKNGYAESALKVFNEMAQSCITPDKVTFLGVLTACSH 764
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 208-247 2.75e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.82  E-value: 2.75e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 965675592  208 RNVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRST 247
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 511-557 1.51e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.51e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 965675592  511 RSVVSFNALIAGYAPKN-IKEAISLIHEMLILGLKPSEITFVSIIDVC 557
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGkVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 187-491 3.47e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 54.50  E-value: 3.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  187 YTSL-------GKLDNACQLFAQMPIS--TRNVVAWNVMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIAS 257
Cdd:PLN03218  475 YTTListcaksGKVDAMFEVFHEMVNAgvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  258 LAALHHGFLVHA--LAIKQGFDSSIYVASSLINMYGKCAMLDAARQVFDAIsHKNLI-----VWNTMLGIYSQNVYLSNV 330
Cdd:PLN03218  555 SGAVDRAFDVLAemKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIkgtpeVYTIAVNSCSQKGDWDFA 633

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  331 MELFSDMTICGVHPDEFTYTSILSSCASFEYVRIGHQLHSTIIKKGFTSNLFVNNSLIDMYAKAGALTEAAKQFE---LM 407
Cdd:PLN03218  634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEdikSI 713

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  408 SCRDHVS-WNAIIVGYVQEEEEAVAFSLFQRMNLDGVVPDEVSLASILSACGNIKVLDVGQQLHCLSVKLGLETNLFAGS 486
Cdd:PLN03218  714 KLRPTVStMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793


                  ....*
gi 965675592  487 SLIDM 491
Cdd:PLN03218  794 CITGL 798
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 309-357 4.07e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 4.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 965675592  309 KNLIVWNTMLGIYSQNVYLSNVMELFSDMTICGVHPDEFTYTSILSSCA 357
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 63-406 6.55e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 53.34  E-value: 6.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592   63 SGHSPDQFTFAITLSACAKLHNVELGRAVHCCIIKRGIQSASFCHGALIHLYVNSHSLTSARTLFDAAPSPHLNP--VSW 140
Cdd:PLN03218  466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPdrVVF 545

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  141 TSLISGYVQAGLPQQALHVFDKIRTTVSPasfplLDP--VALVTVLNTYTSLGKLDNACQLFaQMpISTRNV----VAWN 214
Cdd:PLN03218  546 NALISACGQSGAVDRAFDVLAEMKAETHP-----IDPdhITVGALMKACANAGQVDRAKEVY-QM-IHEYNIkgtpEVYT 618

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  215 VMISGHAKRGHYQEALAFFRQMSKHGVKSSRSTLASVLSAIASLAALHHGFLVHALAIKQGFDSSIYVASSLInmyGKCA 294
Cdd:PLN03218  619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM---GACS 695

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  295 ML---DAARQVFDAISHKNLI----VWNTMLGIYSQNVYLSNVMELFSDMTICGVHPDEFTYTSILSSCASFEYVRIGHQ 367
Cdd:PLN03218  696 NAknwKKALELYEDIKSIKLRptvsTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 965675592  368 LHSTIIKKGFTSNLFVNNSLIDM----YAKAGALTEAAKQFEL 406
Cdd:PLN03218  776 LLSQAKEDGIKPNLVMCRCITGLclrrFEKACALGEPVVSFDS 818
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 668-778 1.02e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.96  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  668 DG-REIHSLIFHTGFDLDELTGSSLVDMYAKCGDVKSAVQVFHELT---IKKDVISWNSMIVGFAKNGYAESALKVFNEM 743
Cdd:PLN03218  454 DGaLRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 965675592  744 AQSCITPDKVTFLGVLTACSHAGWVYEGLQVFHIM 778
Cdd:PLN03218  534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 791-884 2.65e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 2.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 791 YACMVDLLGRWGFLKEAEEFIDK-IEVEPNAMIWANLLGACRIH-GDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASG 868
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGLALLKaGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                         90
                 ....*....|....*.
gi 965675592 869 LWDEARSLRRTMMQKD 884
Cdd:COG4783  121 RPDEAIAALEKALELD 136
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 613-659 2.75e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 2.75e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 965675592  613 KSTVMWTALISGYTQNECSDVALNLYQEMRGNSILPDQATFVTVLRA 659
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 797-884 6.49e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 6.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 797 LLGRWGFLKEAEEFIDK-IEVEPN-AMIWANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEAR 874
Cdd:COG5010   63 LYNKLGDFEESLALLEQaLQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142

                         90
                 ....*....|
gi 965675592 875 SLRRTMMQKD 884
Cdd:COG5010  143 AALQRALGTS 152
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 211-241 9.54e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.84  E-value: 9.54e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 965675592  211 VAWNVMISGHAKRGHYQEALAFFRQMSKHGV 241
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 798-884 1.38e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 1.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 798 LGRWgflKEAEEFIDK-IEVEP-NAMIWANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARS 875
Cdd:COG4235   30 LGRY---DEALAAYEKaLRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIA 106


                 ....*....
gi 965675592 876 LRRTMMQKD 884
Cdd:COG4235  107 AWQKLLALL 115
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 211-242 1.83e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.83e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 965675592  211 VAWNVMISGHAKRGHYQEALAFFRQMSKHGVK 242
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
715-878 1.98e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.31  E-value: 1.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 715 KDVISWNSMIVGFAKNGYAESALKVFNEMAQscITPDKVTFLGVLtacshaGWVYEGLQVFHIMVNCYG----IEPR-GD 789
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNL------GLAYLRLGRYEEALADYEqaleLDPDdAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 790 HYACMVDLLGRWGFLKEAEEFIDK-IEVEP-NAMIWANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAAS 867
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKaLELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170
                 ....*....|.
gi 965675592 868 GLWDEARSLRR 878
Cdd:COG0457  158 GRYEEALELLE 168
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 734-896 2.26e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 48.33  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  734 ESALKVFNEMAQSCITPDKVTFLGVLTACSHAGWVYEGLQVFHIMVNCyGIEPRGDHYACMVDLLGRWGFLKEAeeF--- 810
Cdd:PLN03218  454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKA--Fgay 530

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592  811 ---IDKiEVEPNAMIWANLLGACrihGDEKRGQRAAKKLIELEPRNSS------SYVLLSNLYAASGLWDEARSLRRTMM 881
Cdd:PLN03218  531 gimRSK-NVKPDRVVFNALISAC---GQSGAVDRAFDVLAEMKAETHPidpdhiTVGALMKACANAGQVDRAKEVYQMIH 606

                         170
                  ....*....|....*
gi 965675592  882 QKDIQKMPGCSWIVV 896
Cdd:PLN03218  607 EYNIKGTPEVYTIAV 621
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 718-743 3.19e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 3.19e-05
                          10        20
                  ....*....|....*....|....*.
gi 965675592  718 ISWNSMIVGFAKNGYAESALKVFNEM 743
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
797-884 3.47e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 3.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 797 LLGRWGFLKEAEEFIDK-IEVEP-NAMIWANLLGACRIHGDEKRGqRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEAR 874
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKaLELDPdNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|
gi 965675592 875 SLRRTMMQKD 884
Cdd:COG3063   80 AYLERALELD 89
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 789-878 4.89e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 4.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 789 DHYACMVDLLGRWGFLKEAEEFIDK-IEVEP-NAMIWANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAA 866
Cdd:COG3914  113 EALFNLGNLLLALGRLEEALAALRRaLALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQD 192

                         90
                 ....*....|...
gi 965675592 867 SGLWDEAR-SLRR 878
Cdd:COG3914  193 LGRLEEAIaAYRR 205
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 718-751 1.10e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 1.10e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 965675592  718 ISWNSMIVGFAKNGYAESALKVFNEMAQSCITPD 751
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 713-743 1.64e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.64  E-value: 1.64e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 965675592  713 IKKDVISWNSMIVGFAKNGYAESALKVFNEM 743
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 410-459 2.46e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.65  E-value: 2.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 965675592  410 RDHVSWNAIIVGYVQEEEEAVAFSLFQRMNLDGVVPDEVSLASILSACGN 459
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 33-81 8.65e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.11  E-value: 8.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 965675592   33 NASVWNSLLRMHSTHGLPQSVLRCFASFLNSGHSPDQFTFAITLSACAK 81
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 802-930 1.08e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 802 GFLKEAEEFIDK-IEVEP-NAMIWANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLrrt 879
Cdd:COG2956   90 GLLDRAEELLEKlLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA--- 166

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 965675592 880 mMQKDIQKMPGC--SWIVVGQItnLFVAGDKshpscdeiSLALKHLTALIKDN 930
Cdd:COG2956  167 -LEKALKLDPDCarALLLLAEL--YLEQGDY--------EEAIAALERALEQD 208
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 138-164 1.17e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 1.17e-03
                          10        20
                  ....*....|....*....|....*..
gi 965675592  138 VSWTSLISGYVQAGLPQQALHVFDKIR 164
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMK 27
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
814-873 1.28e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.53  E-value: 1.28e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 965675592 814 IEVEPN-AMIWANLLGACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEA 873
Cdd:COG0457    1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA 61
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 798-889 1.46e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 798 LGRWgflKEAEEFIDK-IEVEPNAMIWANLLGAC-RIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARS 875
Cdd:COG2956  123 EGDW---EKAIEVLERlLKLGPENAHAYCELAELyLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIA 199

                         90
                 ....*....|....
gi 965675592 876 LRRTMMQKDIQKMP 889
Cdd:COG2956  200 ALERALEQDPDYLP 213
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 616-646 1.54e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.54e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 965675592  616 VMWTALISGYTQNECSDVALNLYQEMRGNSI 646
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
136-235 1.72e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965675592 136 NPVSWTSLISGYVQAGLPQQALHVFDK-IRTTVSpasfpllDPVALVTVLNTYTSLGKLDNACQLFAQ-MPISTRNVVAW 213
Cdd:COG0457   41 DAEALYNLGLAYLRLGRYEEALADYEQaLELDPD-------DAEALNNLGLALQALGRYEEALEDYDKaLELDPDDAEAL 113

                         90       100
                 ....*....|....*....|..
gi 965675592 214 NVMISGHAKRGHYQEALAFFRQ 235
Cdd:COG0457  114 YNLGLALLELGRYDEAIEAYER 135
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 487-524 2.25e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.96  E-value: 2.25e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 965675592  487 SLIDMYSKCGDSEDAQKIYSRMPER----SVVSFNALIAGYA 524
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 829-884 2.67e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 2.67e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 965675592 829 ACRIHGDEKRGQRAAKKLIELEPRNSSSYVLLSNLYAASGLWDEARSLRRTMMQKD 884
Cdd:COG4783   13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD 68
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 616-649 2.97e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 2.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 965675592  616 VMWTALISGYTQNECSDVALNLYQEMRGNSILPD 649
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 707-762 4.00e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 4.00e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 965675592  707 VFHELT---IKKDVISWNSMIVGFAKNGYAESALKVFNEMAQSCITPDKVTFLGVLTAC 762
Cdd:pfam13812   2 ILREMVrdgIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 209-237 7.04e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 7.04e-03
                          10        20
                  ....*....|....*....|....*....
gi 965675592  209 NVVAWNVMISGHAKRGHYQEALAFFRQMS 237
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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