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Conserved domains on  [gi|1676322921|dbj|BBD84104|]
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ribosomal protein S17, partial [Drosophila nebulosa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S17e super family cl00610
Ribosomal S17;
1-54 2.16e-31

Ribosomal S17;


The actual alignment was detected with superfamily member pfam00833:

Pssm-ID: 469841  Cd Length: 122  Bit Score: 104.64  E-value: 2.16e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1676322921   1 EVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSA 54
Cdd:pfam00833  37 EVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGISLKLQEEERERRDNYVPEVSA 90
 
Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-54 2.16e-31

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 104.64  E-value: 2.16e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1676322921   1 EVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSA 54
Cdd:pfam00833  37 EVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGISLKLQEEERERRDNYVPEVSA 90
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
 1-53 3.96e-28

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 96.64  E-value: 3.96e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1676322921   1 EVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVS 53
Cdd:PTZ00154   37 EVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRMDYVPEKS 89
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-27 1.14e-05

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 37.92  E-value: 1.14e-05
                         10        20
                 ....*....|....*....|....*..
gi 1676322921  1 EVAIIPTKPLRNKIAGYVTHLMGRLRH 27
Cdd:COG1383   37 ELTDVESKRVRNRIAGYITRKVKKRKR 63
 
Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-54 2.16e-31

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 104.64  E-value: 2.16e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1676322921   1 EVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSA 54
Cdd:pfam00833  37 EVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGISLKLQEEERERRDNYVPEVSA 90
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
 1-53 3.96e-28

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 96.64  E-value: 3.96e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1676322921   1 EVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVS 53
Cdd:PTZ00154   37 EVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRMDYVPEKS 89
rps17E PRK01151
30S ribosomal protein S17e; Validated
 1-23 4.33e-06

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 38.70  E-value: 4.33e-06
                         10        20
                 ....*....|....*....|...
gi 1676322921  1 EVAIIPTKPLRNKIAGYVTHLMG 23
Cdd:PRK01151  36 ELTNIESKKVRNRIAGYITRKVK 58
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-27 1.14e-05

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 37.92  E-value: 1.14e-05
                         10        20
                 ....*....|....*....|....*..
gi 1676322921  1 EVAIIPTKPLRNKIAGYVTHLMGRLRH 27
Cdd:COG1383   37 ELTDVESKRVRNRIAGYITRKVKKRKR 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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