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Conserved domains on  [gi|2083529866|dbj|BCT02615|]
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cytochrome b (mitochondrion) [Medakamo hakoo]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-382 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 536.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   9 QPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGA 88
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  89 SMFFMVVYIHMFRGLYYGSYASprEFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 168
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLY--KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 169 GGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYF 248
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 249 YPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFF 328
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2083529866 329 WLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLIHY 382
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 9-382 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 536.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   9 QPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGA 88
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  89 SMFFMVVYIHMFRGLYYGSYASprEFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 168
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLY--KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 169 GGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYF 248
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 249 YPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFF 328
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2083529866 329 WLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLIHY 382
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-376 4.47e-158

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 450.40  E-value: 4.47e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  12 LSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  92 FMVVYIHMFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGF 171
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 172 SVDNATLNRFYSLHYL-LPFIIAGASLVHIAALHQYGSNNPLG----TNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFV 246
Cdd:COG1290   180 FPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 247 YFYPNvlGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIP--NKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLH 324
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2083529866 325 KKFFWLLVADCIILVWIGQEPveDPYILIGQLASVYFFFYFLVVIPFLGKIE 376
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-209 5.03e-100

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 295.43  E-value: 5.03e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSN 209
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-207 1.15e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.47  E-value: 1.15e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  19 LIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMFFMVVYIH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  99 MFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 178
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2083529866 179 NRFYSLHYLLPFIIAGASLVHIAALHQYG 207
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 261-342 2.36e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 64.43  E-value: 2.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 261 PANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFI-NTSQVRSSSFRPLHKKFFWLlvaDCIILV 339
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVFLF---GTVVAL 141


                  ...
gi 2083529866 340 WIG 342
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 9-382 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 536.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   9 QPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGA 88
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  89 SMFFMVVYIHMFRGLYYGSYASprEFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 168
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLY--KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 169 GGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYF 248
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 249 YPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFF 328
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2083529866 329 WLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLIHY 382
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 532.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  12 LSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  92 FMVVYIHMFRGLYYGSYASPreFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGF 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 172 SVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFYPN 251
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 252 VLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFWLL 331
Cdd:MTH00156  239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2083529866 332 VADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLV 367
Cdd:MTH00156  319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFII 354
CYTB MTH00191
cytochrome b; Provisional
 8-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 524.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   8 KQPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANG 87
Cdd:MTH00191    4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  88 ASMFFMVVYIHMFRGLYYGSYASPRefLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWL 167
Cdd:MTH00191   84 ASFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 168 WGGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVY 247
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 248 FYPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKF 327
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2083529866 328 FWLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPF 371
Cdd:MTH00191  322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00145
cytochrome b; Provisional
 1-382 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 517.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   1 MKRVSILKQPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLL 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  81 RYAHANGASMFFMVVYIHMFRGLYYGSYASPRefLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVG 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 161 DTIVTWLWGGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAV 240
Cdd:MTH00145  159 KMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLF 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 241 VFSIFVYFYPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSF 320
Cdd:MTH00145  239 LLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSF 318

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2083529866 321 RPLHKKFFWLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLvVIPFLGKIEDYLIHY 382
Cdd:MTH00145  319 YPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNILDY 379
CYTB MTH00131
cytochrome b; Provisional
 10-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 511.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:MTH00131    9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYASPREflWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:MTH00131   89 FFFICIYLHIGRGLYYGSYLYKET--WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00131  167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFW 329
Cdd:MTH00131  247 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFW 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIED 377
Cdd:MTH00131  327 TLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00100
cytochrome b; Provisional
 10-380 3.29e-180

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 506.10  E-value: 3.29e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:MTH00100    9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYASPREflWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:MTH00100   89 MFFICLFLHVGRGLYYGSYLFLET--WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00100  167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFW 329
Cdd:MTH00100  247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFW 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLI 380
Cdd:MTH00100  327 LLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 10-382 8.95e-178

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 499.98  E-value: 8.95e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:MTH00074   10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYASPREflWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:MTH00074   90 FFFICIYLHIGRGLYYGSYMYKET--WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00074  168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFW 329
Cdd:MTH00074  248 PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLIHY 382
Cdd:MTH00074  328 LLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00016
cytochrome b; Validated
 8-380 4.67e-176

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 495.35  E-value: 4.67e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   8 KQPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANG 87
Cdd:MTH00016    8 THPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  88 ASMFFMVVYIHMFRGLYYGSYASPREflWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWL 167
Cdd:MTH00016   88 ASFFFICLYLHIGRGIYYGSYFLMET--WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 168 WGGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVY 247
Cdd:MTH00016  166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 248 FYPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKF 327
Cdd:MTH00016  246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2083529866 328 FWLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLvVIPFLGKIEDYLI 380
Cdd:MTH00016  326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 10-383 5.22e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 492.68  E-value: 5.22e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:MTH00022    8 PLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGAS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYAspREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:MTH00022   88 LFFLCLYIHIGRGLYYGGYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00022  166 GFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFW 329
Cdd:MTH00022  246 PNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFW 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLIHYK 383
Cdd:MTH00022  326 FLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
CYTB MTH00034
cytochrome b; Validated
 10-380 3.43e-173

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 488.06  E-value: 3.43e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:MTH00034    9 PLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYASprEFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:MTH00034   89 LFFICLYFHIGRGLYYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00034  167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFW 329
Cdd:MTH00034  247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFW 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLI 380
Cdd:MTH00034  327 LLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00053
cytochrome b; Provisional
 10-380 1.78e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 486.52  E-value: 1.78e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYAspREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00053  168 GFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLF 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFW 329
Cdd:MTH00053  248 PYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLI 380
Cdd:MTH00053  328 FLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-376 4.47e-158

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 450.40  E-value: 4.47e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  12 LSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  92 FMVVYIHMFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGF 171
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 172 SVDNATLNRFYSLHYL-LPFIIAGASLVHIAALHQYGSNNPLG----TNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFV 246
Cdd:COG1290   180 FPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 247 YFYPNvlGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIP--NKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLH 324
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2083529866 325 KKFFWLLVADCIILVWIGQEPveDPYILIGQLASVYFFFYFLVVIPFLGKIE 376
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00224
cytochrome b; Provisional
 9-380 5.41e-152

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 434.35  E-value: 5.41e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   9 QPLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGA 88
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  89 SMFFMVVYIHMFRGLYYGSYASPREflWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 168
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSET--WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 169 GGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYF 248
Cdd:MTH00224  167 GGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 249 YPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFF 328
Cdd:MTH00224  247 EPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2083529866 329 WLLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFlVVIPFLGKIEDYLI 380
Cdd:MTH00224  327 WLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLL 377
CYTB MTH00033
cytochrome b; Provisional
 8-382 1.90e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 377.36  E-value: 1.90e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866   8 KQPLLSTVNEhLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANG 87
Cdd:MTH00033    5 KTGLLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  88 ASMFFMVVYIHMFRGLYYGSYAspREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWL 167
Cdd:MTH00033   84 ASLFFICVYCHIGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 168 WGGFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGwtaFAVVFSIFVY 247
Cdd:MTH00033  162 WGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG---FLILFGVFVI 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 248 F-----YPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRP 322
Cdd:MTH00033  239 IgieprIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNP 318

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2083529866 323 LHKKFFWLLVADCIILVWIGQEPV-EDPYILIGQLASVYFFFYFLVVIPFLGKIEDYLIHY 382
Cdd:MTH00033  319 TGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEY 379
CYTB MTH00086
cytochrome b; Provisional
 15-368 3.23e-114

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 337.30  E-value: 3.23e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  15 VNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMFFMV 94
Cdd:MTH00086    3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  95 VYIHMFRGLYYGSYAspREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVD 174
Cdd:MTH00086   83 LYLHIFKGLFMMSYR--LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 175 NATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTaFAVVFSIFVYFYPNVLG 254
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 255 HPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQvrsSSFRPLHKKFFWLLVAD 334
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYT---SCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2083529866 335 CIILVWIGQEPVEDPYILIGQLASVYFFFYFLVV 368
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-209 5.03e-100

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 295.43  E-value: 5.03e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  10 PLLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  90 MFFMVVYIHMFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 169
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2083529866 170 GFSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSN 209
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-207 1.15e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.47  E-value: 1.15e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  19 LIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMFFMVVYIH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  99 MFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 178
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2083529866 179 NRFYSLHYLLPFIIAGASLVHIAALHQYG 207
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 11-367 1.98e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 261.46  E-value: 1.98e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  11 LLSTVNEHLIDYPSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASM 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  91 FFMVVYIHMFRGLYYGSYAspREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGG 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 171 FSVDNATLNRFYSLHYLLPFIIAGASLVHIAALHQYGSNNPL-GTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFY 249
Cdd:MTH00046  159 FSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVS 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 250 PNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIaLVFISLLALPFINTSQVRSSSfrplHKKFFW 329
Cdd:MTH00046  239 PDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLV-LSFLFFLWVPTFNGSSVYSVW----RQVNFW 313

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2083529866 330 LLVADCIILVWIGQEPVEDPYILIGQLASVYFFFYFLV 367
Cdd:MTH00046  314 LIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 210-357 3.59e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 189.01  E-value: 3.59e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 210 NPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVYFYPNVLGHPDNYIPANPMSTPAHIVPEWYFLWVYAILRSIPN 289
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2083529866 290 KLGGVAAIALVFISLLALPFINTSQVRsSSFRPLHKKFFWLLVADCIILVWIGQEPVEDPYILIGQLA 357
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-256 8.84e-49

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 162.80  E-value: 8.84e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  89 SMFFMVVYIHMFRGLYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 168
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 169 GGFSVDNATLNRFYSLH-YLLPFIIAGASLVHIAALHQYGSNNPLGTNSSVDKINFYPYFYVKDLVGWTAFAVVFSIFVY 247
Cdd:pfam13631  81 GGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2083529866 248 FYPNVLGHP 256
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
261-361 2.99e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.17  E-value: 2.99e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 261 PANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFINTSQVRSSSFRPLHKKFFWLLVADCIILVW 340
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2083529866 341 IGQEPVEDPYILIGQLASVYF 361
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-212 2.39e-45

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 156.03  E-value: 2.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  23 PSPSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMFFMVVYIHMFRG 102
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 103 LYYGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFY 182
Cdd:PRK03735  113 FFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2083529866 183 SLH-YLLPFIIAGASLVHIAALHQYGSNNPL 212
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-212 1.16e-42

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 148.72  E-value: 1.16e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866  25 PSNLNYYWGFGSLAGICLMIQIATGIFLAMHYTPHVDLAFMSVEHIMRDVEGGWLLRYAHANGASMFFMVVYIHMFRGLY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 105 YGSYASPREFLWCIGVIILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFYSL 184
Cdd:CHL00070  107 TGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 2083529866 185 H-YLLPFIIAGASLVHIAALHQYGSNNPL 212
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 261-342 3.83e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 69.65  E-value: 3.83e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 261 PANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFI-NTSQVRSSSFRPLHKKFFWL--LVAdcii 337
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTVFLIgtAVA---- 140


                  ....*
gi 2083529866 338 lVWIG 342
Cdd:CHL00058  141 -LWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 261-342 2.88e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 67.13  E-value: 2.88e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 261 PANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFI-NTSQVRSSSFRPLHKKFFWLlvaDCIILV 339
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATAVFLF---GTLVTL 142


                  ...
gi 2083529866 340 WIG 342
Cdd:COG5679   143 WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 261-342 2.36e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 64.43  E-value: 2.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083529866 261 PANPMSTPAHIVPEWYFLWVYAILRSIPNKLGGVAAIALVFISLLALPFI-NTSQVRSSSFRPLHKKFFWLlvaDCIILV 339
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVFLF---GTVVAL 141


                  ...
gi 2083529866 340 WIG 342
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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