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Conserved domains on  [gi|2415631201|dbj|BDU79554|]
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haptoglobin, partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCP super family cl29654
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 3-29 9.06e-03

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


The actual alignment was detected with superfamily member cd00033:

Pssm-ID: 475240 [Multi-domain]  Cd Length: 57  Bit Score: 29.35  E-value: 9.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2415631201  3 CPKPPEIAHGYVEHS---------VRYQCKNYYKLR 29
Cdd:cd00033    1 CPPPPVPENGTVTGSkgsysygstVTYSCNEGYTLV 36
 
Name Accession Description Interval E-value
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 3-29 9.06e-03

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 29.35  E-value: 9.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2415631201  3 CPKPPEIAHGYVEHS---------VRYQCKNYYKLR 29
Cdd:cd00033    1 CPPPPVPENGTVTGSkgsysygstVTYSCNEGYTLV 36
 
Name Accession Description Interval E-value
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 3-29 9.06e-03

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 29.35  E-value: 9.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2415631201  3 CPKPPEIAHGYVEHS---------VRYQCKNYYKLR 29
Cdd:cd00033    1 CPPPPVPENGTVTGSkgsysygstVTYSCNEGYTLV 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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