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Conserved domains on  [gi|2523986489|dbj|BEK02912|]
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ribosome maturation factor RimP [Campylobacter jejuni]

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10794050)

ribosome maturation factor rimp is important for maturation of 30S ribosome subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14639 PRK14639
ribosome maturation factor RimP;
1-140 7.96e-86

ribosome maturation factor RimP;


:

Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 247.04  E-value: 7.96e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   1 MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKI 80
Cdd:PRK14639    1 MNLEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  81 EHFAKSIGELVKIATNEKEKFEAKIIAVDDENITLENLETQEKTTINFNDIKKARTFVEW 140
Cdd:PRK14639   81 EHFAKSIGELVKITTNEKEKFEGKIVSVDDENITLENLENKEKTTINFNDIKKAKTYVEW 140
 
Name Accession Description Interval E-value
PRK14639 PRK14639
ribosome maturation factor RimP;
1-140 7.96e-86

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 247.04  E-value: 7.96e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   1 MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKI 80
Cdd:PRK14639    1 MNLEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  81 EHFAKSIGELVKIATNEKEKFEAKIIAVDDENITLENLETQEKTTINFNDIKKARTFVEW 140
Cdd:PRK14639   81 EHFAKSIGELVKITTNEKEKFEGKIVSVDDENITLENLENKEKTTINFNDIKKAKTYVEW 140
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
3-140 8.71e-46

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 145.65  E-value: 8.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEH 82
Cdd:COG0779    12 LEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDPIPGAYTLEVSSPGLDRPLKKPRD 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2523986489  83 FAKSIGELVKIATNE----KEKFEAKIIAVDDENITLEnlETQEKTTINFNDIKKARTFVEW 140
Cdd:COG0779    92 FERFIGRLVKVKLREpidgRKKFTGRLLGVDDDGVTLE--VDGKEVEIPLDDIAKARLVIEF 151
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 3-74 4.33e-29

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 101.14  E-value: 4.33e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLE 74
Cdd:pfam02576   2 IEPVVESLGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGEYTLEVSSPGLD 73
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 72-140 1.75e-17

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 71.32  E-value: 1.75e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2523986489  72 GLERKLSKIEHFAKSIGELVKIATNE----KEKFEAKIIAVDDENITLEnLETQEKTTINFNDIKKARTFVEW 140
Cdd:cd01734     1 GLDRPLKKPEDFERFIGKEVKVKLKEpidgRKKFTGELLGVDDDTVTLE-VDDGKEVEIPFDNIAKARLVPEF 72
 
Name Accession Description Interval E-value
PRK14639 PRK14639
ribosome maturation factor RimP;
1-140 7.96e-86

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 247.04  E-value: 7.96e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   1 MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKI 80
Cdd:PRK14639    1 MNLEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  81 EHFAKSIGELVKIATNEKEKFEAKIIAVDDENITLENLETQEKTTINFNDIKKARTFVEW 140
Cdd:PRK14639   81 EHFAKSIGELVKITTNEKEKFEGKIVSVDDENITLENLENKEKTTINFNDIKKAKTYVEW 140
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
3-140 8.71e-46

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 145.65  E-value: 8.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEH 82
Cdd:COG0779    12 LEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDPIPGAYTLEVSSPGLDRPLKKPRD 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2523986489  83 FAKSIGELVKIATNE----KEKFEAKIIAVDDENITLEnlETQEKTTINFNDIKKARTFVEW 140
Cdd:COG0779    92 FERFIGRLVKVKLREpidgRKKFTGRLLGVDDDGVTLE--VDGKEVEIPLDDIAKARLVIEF 151
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-140 2.52e-44

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 142.25  E-value: 2.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEH 82
Cdd:PRK00092   13 IEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPLKKARD 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2523986489  83 FAKSIGELVKIAT----NEKEKFEAKIIAVDDENITLENLETQEKTTINFNDIKKARTFVEW 140
Cdd:PRK00092   93 FRRFIGREVKVKLyepiDGRKKFQGILLAVDGETVTLEVEGKEKEVEIPLDNIAKARLVVEF 154
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 3-74 4.33e-29

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 101.14  E-value: 4.33e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLE 74
Cdd:pfam02576   2 IEPVVESLGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGEYTLEVSSPGLD 73
PRK14640 PRK14640
hypothetical protein; Provisional
 3-134 1.19e-28

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 102.39  E-value: 1.19e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEH 82
Cdd:PRK14640   12 LEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQ 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2523986489  83 FAKSIGEL----VKIATNEKEKFEAKIIAVDDENITLeNLETQEKtTINFNDIKKA 134
Cdd:PRK14640   92 FEKYVGQEaavtLRMATNNRRKFKGVIKAVQGDMITL-TVDGKDE-VLAFTNIQKA 145
PRK14647 PRK14647
ribosome maturation factor RimP;
11-134 2.61e-21

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 83.64  E-value: 2.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  11 GLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGEL 90
Cdd:PRK14647   22 GLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLKKEADYERYAGRL 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2523986489  91 VKIAT---------NEKEKFEAKIIAVDDENITLENLETQeKTTINFNDIKKA 134
Cdd:PRK14647  102 VKVRTfelladeagNKRKTFLGELEGLADGVVTIALKEGQ-QARIPLDKIAKA 153
PRK14631 PRK14631
ribosome maturation factor RimP;
12-134 9.47e-19

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 77.62  E-value: 9.47e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  12 LSFYDDELVSENGRKIYRIYVQKEGG--VNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGE 89
Cdd:PRK14631   39 LRIYIDRLVEENAEPVINEDGEVEQGrgIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQ 118

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2523986489  90 LVKI----ATNEKEKFEAKIIAVDDEN--ITLEnLETQEKTTINFNDIKKA 134
Cdd:PRK14631  119 QVALrliaAVENRRKFQAKLLAVDLENeeIQVE-VEGKHVLDIDSNNIDKA 168
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 72-140 1.75e-17

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 71.32  E-value: 1.75e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2523986489  72 GLERKLSKIEHFAKSIGELVKIATNE----KEKFEAKIIAVDDENITLEnLETQEKTTINFNDIKKARTFVEW 140
Cdd:cd01734     1 GLDRPLKKPEDFERFIGKEVKVKLKEpidgRKKFTGELLGVDDDTVTLE-VDDGKEVEIPFDNIAKARLVPEF 72
PRK14632 PRK14632
ribosome maturation factor RimP;
6-134 6.02e-17

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 72.79  E-value: 6.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   6 LCKEAGLSFYDDELVsENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85
Cdd:PRK14632   17 FLASLGLELWGIELS-YGGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFFRAEQMSP 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2523986489  86 SIGELVKIATN-------EKEKFEAKIIAVDDENITL------ENLETQEKTTINFNDIKKA 134
Cdd:PRK14632   96 YVGRQIELTLIdptpewpGRRKFRGELLAVEGDTVVLrpegapAPEAEEAVLRTSWQGVRKA 157
PRK14633 PRK14633
ribosome maturation factor RimP;
3-135 7.54e-17

ribosome maturation factor RimP;


Pssm-ID: 173096 [Multi-domain]  Cd Length: 150  Bit Score: 71.92  E-value: 7.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   3 LEALCKEAGLSFYDDELVSeNGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEH 82
Cdd:PRK14633   10 VEPITADLGYILWGIEVVG-SGKLTIRIFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNRQIFNIIQ 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2523986489  83 FAKSIGELVKIAT----NEKEKFEAKIIAVDDENITLeNLETQEKTTINFNDIKKAR 135
Cdd:PRK14633   89 AQALVGFNVKAVTlapvGSQTKFKGVLERVEGNNVIL-NLEDGKEISFDFDELKKLR 144
PRK14645 PRK14645
ribosome maturation factor RimP;
4-140 2.49e-14

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 65.56  E-value: 2.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   4 EALCKEAGLSFYDDELVSENGRKIY--RIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIE 81
Cdd:PRK14645   16 EGALEPLGYEVLEVQVQRSGGKRIVlvRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESPGPKRPLFTAR 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2523986489  82 HFAKSIGELVKIATNEkEKFEAKIIAVDDENITLEnLETQEKtTINFNDIKKarTFVEW 140
Cdd:PRK14645   96 HFERFAGLKAKVRGPG-ENFTGRIKAVSGDQVTFD-VGGEDR-TLRIGTFQA--NLAEW 149
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 77-140 2.62e-14

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 63.03  E-value: 2.62e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2523986489  77 LSKIEHFAKSIGELVKIAT----NEKEKFEAKIIAVDDENITLEnLETQEKTTINFNDIKKARTFVEW 140
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLklpiDGRKKFQGKIVAVDGETITLE-VDGKTEVTIPFDDIDKARLVPEF 67
PRK14636 PRK14636
ribosome maturation protein RimP;
40-135 6.87e-14

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 64.80  E-value: 6.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  40 LDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEK----EKFEAKIIAVDDENITL 115
Cdd:PRK14636   50 IEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGIDRPLTRPKDFADWAGHEARIALSEPldgrKQFRGELKGIDGDTVTI 129

                          90       100
                  ....*....|....*....|
gi 2523986489 116 ENLETQEKtTINFNDIKKAR 135
Cdd:PRK14636  130 ADNKAGEV-ILPFAAIESAK 148
PRK14638 PRK14638
ribosome maturation factor RimP;
4-140 8.45e-14

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 64.11  E-value: 8.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   4 EALCKEAGLSFYDDELVSENGRKIYRIYVQK-EGGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEH 82
Cdd:PRK14638   15 ERIAEEQGLEIFDVQYRRESRGWVLRIIIDNpVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKD 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2523986489  83 FAKSIGELVKIATNEKEKFEAKIIAVDDENITLEnlETQEKTTINFNDIKKARTFVEW 140
Cdd:PRK14638   95 YVRFTGKLAKIVTKDGKTFIGRIESFVDGTITIS--DEKEKYEINIDDVKRANLEVEF 150
PRK14637 PRK14637
ribosome maturation factor RimP;
29-135 3.24e-12

ribosome maturation factor RimP;


Pssm-ID: 237774 [Multi-domain]  Cd Length: 151  Bit Score: 59.88  E-value: 3.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  29 RIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNgEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEKEKFEAKIIA- 107
Cdd:PRK14637   40 RAVIYSAGGVGLDDCARVHRILVPRLEALGGVR-DVFLEVSSPGIERVIKNAAEFSIFVGETVKVWFECTGQWQVGTIAe 118

                          90       100
                  ....*....|....*....|....*...
gi 2523986489 108 VDDENITLENleTQEKTTINFNDIKKAR 135
Cdd:PRK14637  119 ADETCLVLTS--DGVPVTIPYVQITKAQ 144
PRK02001 PRK02001
ribosome assembly cofactor RimP;
37-134 1.55e-09

ribosome assembly cofactor RimP;


Pssm-ID: 179358 [Multi-domain]  Cd Length: 152  Bit Score: 52.67  E-value: 1.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  37 GVNLDDCARLSEILSPIFDVEppvNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEKEKFEAKIIAVDDENITLE 116
Cdd:PRK02001   42 GVWIEDCVELSRAIEHNLDRE---EEDFELEVGSAGLTSPLKVPRQYKKNIGRELEVLTKNGKKIEGELKSADENDITLE 118

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2523986489 117 -------------NLETQEKtTINFNDIKKA 134
Cdd:PRK02001  119 vkarepkeggkgkVTVEKEE-TITYDDIKEA 148
PRK14635 PRK14635
ribosome maturation factor RimP;
34-139 1.04e-04

ribosome maturation factor RimP;


Pssm-ID: 184774 [Multi-domain]  Cd Length: 162  Bit Score: 39.90  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  34 KEGGVNLDDCARLSEILSPIFDVEPPvNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIA--TNEKEKFEA---KIIAV 108
Cdd:PRK14635   46 PYGSVSLLECEQVSRKLKEELERISP-DLDFTLKVSSAGAERKLRLPEDLDRFRGIPVRLVfrSEESEKWQEgifRLVNR 124

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2523986489 109 DDENITLENLE------TQEKTTINFNDIKKARTFVE 139
Cdd:PRK14635  125 DGDQVELEKFQkgkkskVKKQTTLNLKDILKGNLYVE 161
LolA_like pfam17131
Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane ...
 79-132 4.69e-04

Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane lipoprotein-sorting proteins.


Pssm-ID: 435738 [Multi-domain]  Cd Length: 184  Bit Score: 38.31  E-value: 4.69e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2523986489  79 KIEHFAKSiGELVKIATNEK-EKFEAKIIAVDdenITLENLETQEKTTINFNDIK 132
Cdd:pfam17131 117 KAEFYDKS-GKLLKTLTVSDiEKIDGRWTPTK---MEMEDLQTGHKTVLEISDIE 167
PRK14644 PRK14644
hypothetical protein; Provisional
 1-133 5.43e-04

hypothetical protein; Provisional


Pssm-ID: 184779 [Multi-domain]  Cd Length: 136  Bit Score: 37.51  E-value: 5.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   1 MNLEALCKEA-GLSFYDDELVSENGRKIYRIYVQKEggvNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSk 79
Cdd:PRK14644    1 MTWKEKLLEKfGNKINEIKIVKEDGDLFLEVILNSR---DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMDYE- 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  80 IEHFAKSIGELVKIATNEK----EKFEAKIIAVDDENITLE-NLETQ-EKTTINFNDIKK 133
Cdd:PRK14644   77 TDELENHIGEIIDVSLNKEvnktDFITGELLENNPETITLKwNCKGQfRKVEINKENIKK 136
PRK14634 PRK14634
ribosome maturation factor RimP;
38-104 5.91e-04

ribosome maturation factor RimP;


Pssm-ID: 173097 [Multi-domain]  Cd Length: 155  Bit Score: 37.85  E-value: 5.91e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2523986489  38 VNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEKEKFEAK 104
Cdd:PRK14634   50 VSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIGDQLSSDRDFQTFRGFPVEVSHRDDDGSEQR 116
PRK14642 PRK14642
ribosome maturation factor RimP;
35-93 8.62e-04

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 37.53  E-value: 8.62e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489  35 EGGVNLDDCARLSEILSPIFDVEppvNGEYF-LEVSSPGLERKLSKIEHFAKSIGELVKI 93
Cdd:PRK14642   49 EQFVTVEDCEKVTRQLQFALEVD---GVDYKrLEVSSPGIDRPLRHEQDFERFAGEVIDI 105
PRK14646 PRK14646
ribosome maturation factor RimP;
3-98 1.40e-03

ribosome maturation factor RimP;


Pssm-ID: 173109 [Multi-domain]  Cd Length: 155  Bit Score: 36.85  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523986489   3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGG--VNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKI 80
Cdd:PRK14646   13 LEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGddISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSDELTSE 92

                          90
                  ....*....|....*...
gi 2523986489  81 EHFAKSIGELVKIATNEK 98
Cdd:PRK14646   93 RDFKTFKGFPVNVELNQK 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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