|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 722.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 1 MKITGKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 81 YLHANGASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 161 VEWIWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLL 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 241 LLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 4127398 321 SQAMFWILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLK 378
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
11-373 |
1.25e-120 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 354.48 E-value: 1.25e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 11 LKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMF 90
Cdd:COG1290 20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 91 FMCLFMHVGRGIYYGSY-----IfteTWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:COG1290 100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFH-FILPFIIAALAMVHLLFLHETGSNNPTGV----NSDADKIPFHPYYTIKDllGVFLMLLMLL 240
Cdd:COG1290 177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKD--GFGFFVFLGV 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 241 LLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIP--NKLGGVLALMLSILILILMPLIHTSKQRSLVFR 318
Cdd:COG1290 255 FALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 4127398 319 PISQAMFWILTANLLILTWIGGQPVehPFVMIGQLASISYFSIILILMPISGLIE 373
Cdd:COG1290 335 PVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
1.51e-98 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 291.19 E-value: 1.51e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 9 PLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 89 MFFMCLFMHVGRGIYYGSYIFT--ETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 4127398 167 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
8.36e-89 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 265.78 E-value: 8.36e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 18 FIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMFFMCLFMH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 98 VGRGIYYG--SYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSVDKATL 175
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 4127398 176 TRFFAFHFILPFIIAALAMVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
258-291 |
5.25e-06 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 45.94 E-value: 5.25e-06
10 20 30
....*....|....*....|....*....|....
gi 4127398 258 PANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGV 291
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 722.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 1 MKITGKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 81 YLHANGASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 161 VEWIWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLL 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 241 LLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 4127398 321 SQAMFWILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLK 378
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
6-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 655.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00119 7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00119 87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00119 167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00119 247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLKL 379
Cdd:MTH00119 327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-380 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 651.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 1 MKITGKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00131 1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 81 YLHANGASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNL 160
Cdd:MTH00131 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 161 VEWIWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLL 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 241 LLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 321 SQAMFWILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLKLN 380
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 636.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 1 MKITGKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00074 2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 81 YLHANGASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNL 160
Cdd:MTH00074 82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 161 VEWIWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLL 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 241 LLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 4127398 321 SQAMFWILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLKL 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
6-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 604.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00191 3 KTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHAN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00191 83 GASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00191 163 GGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLF 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00191 243 SPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVF 322
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPI 368
Cdd:MTH00191 323 WLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
11-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 578.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 11 LKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMF 90
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 91 FMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSV 170
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 171 DKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLFS*DLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 251 GDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMFWILTA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 4127398 331 NLLILTWIGGQPVEHPFVMIGQLASISYFSIILILM 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
6-377 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 568.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00034 6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00034 86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00034 166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00034 246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKML 377
Cdd:MTH00034 326 WLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
6-377 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 560.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00145 7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00145 87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00145 167 GGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLF 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00145 247 FPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLF 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILmPISGLIENKML 377
Cdd:MTH00145 327 WIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
6-378 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 535.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00016 7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00016 87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00016 167 GGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00016 247 WPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILF 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSiILILMPISGLIENKMLK 378
Cdd:MTH00016 327 WLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
6-379 |
3.40e-176 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 495.00 E-value: 3.40e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00053 7 KENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHAN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00053 87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00053 167 GGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00053 247 FPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILF 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLKL 379
Cdd:MTH00053 327 WFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
6-380 |
2.00e-174 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 490.75 E-value: 2.00e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 6 KTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHAN 85
Cdd:MTH00022 5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 86 GASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:MTH00022 85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLF 245
Cdd:MTH00022 165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 246 S*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMF 325
Cdd:MTH00022 245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 4127398 326 WILTANLLILTWIGGQPVEHPFVMIGQLASISYFSIILILMPISGLIENKMLKLN 380
Cdd:MTH00022 325 WFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
7-378 |
2.56e-169 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 477.88 E-value: 2.56e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 7 THPLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANG 86
Cdd:MTH00224 8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 87 ASMFFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWG 166
Cdd:MTH00224 88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 167 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLFS 246
Cdd:MTH00224 168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 247 *DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMFW 326
Cdd:MTH00224 248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFW 327
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 4127398 327 ILTANLLILTWIGGQPVEHPFVMIGQLASISYFSiILILMPISGLIENKMLK 378
Cdd:MTH00224 328 LLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
19-380 |
5.36e-128 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 373.12 E-value: 5.36e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 19 IDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMFFMCLFMHV 98
Cdd:MTH00033 16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 99 GRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSVDKATLTRF 178
Cdd:MTH00033 96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 179 FAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVL--FS*DLLGDPDNY 256
Cdd:MTH00033 176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 257 TPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMFWILTANLLILT 336
Cdd:MTH00033 256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 4127398 337 WIGGQPV-EHPFVMIGQLASISYFSIILILMPISGLIENKMLKLN 380
Cdd:MTH00033 336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEYN 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
11-373 |
1.25e-120 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 354.48 E-value: 1.25e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 11 LKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMF 90
Cdd:COG1290 20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 91 FMCLFMHVGRGIYYGSY-----IfteTWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:COG1290 100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 166 GGFSVDKATLTRFFAFH-FILPFIIAALAMVHLLFLHETGSNNPTGV----NSDADKIPFHPYYTIKDllGVFLMLLMLL 240
Cdd:COG1290 177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKD--GFGFFVFLGV 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 241 LLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIP--NKLGGVLALMLSILILILMPLIHTSKQRSLVFR 318
Cdd:COG1290 255 FALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 4127398 319 PISQAMFWILTANLLILTWIGGQPVehPFVMIGQLASISYFSIILILMPISGLIE 373
Cdd:COG1290 335 PVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
12-366 |
6.43e-113 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 333.44 E-value: 6.43e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 12 KIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMFF 91
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 92 MCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSVD 171
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 172 KATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKDlLGVFLMLLMLLLLVLFS*DLLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 252 DPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQrslVFRPISQAMFWILTAN 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316
|
330 340 350
....*....|....*....|....*....|....*
gi 4127398 332 LLILTWIGGQPVEHPFVMIGQLASISYFSIILILM 366
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
1.51e-98 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 291.19 E-value: 1.51e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 9 PLLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 89 MFFMCLFMHVGRGIYYGSYIFT--ETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 4127398 167 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
8.36e-89 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 265.78 E-value: 8.36e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 18 FIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMFFMCLFMH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 98 VGRGIYYG--SYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSVDKATL 175
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 4127398 176 TRFFAFHFILPFIIAALAMVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
10-364 |
3.93e-85 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 262.61 E-value: 3.93e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 10 LLKIINHAFIDLPAPSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASM 89
Cdd:MTH00046 1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 90 FFMCLFMHVGRGIYYGSYIFTETWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFS 169
Cdd:MTH00046 81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 170 VDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGV-NSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLFS*D 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 249 LLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILmplihTSKQRSLVFRPISQAMFWIL 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV-----PTFNGSSVYSVWRQVNFWLI 315
|
330 340 350
....*....|....*....|....*....|....*.
gi 4127398 329 TANLLILTWIGGQPVEHPFVMIGQLASISYFSIILI 364
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
207-354 |
4.27e-41 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 141.63 E-value: 4.27e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 207 NPTGVNSDADKIPFHPYYTIKDLLGVFLMLLMLLLLVLFS*DLLGDPDNYTPANPLNTPPHIKPEWYFLFRYAILRSIPN 286
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4127398 287 KLGGVLALMLSILILILMPLIHTSKQRSlVFRPISQAMFWILTANLLILTWIGGQPVEHPFVMIGQLA 354
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
33-208 |
9.03e-41 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 143.31 E-value: 9.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 33 FGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMFFMCLFMHVGRGIYYGSYIFTE- 111
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 112 -TWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSVDKATLTRFFAFH-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170
....*....|....*....
gi 4127398 190 AALAMVHLLFLHETGSNNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
88-228 |
1.15e-40 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 141.22 E-value: 1.15e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 88 SMFFMCLFMHVGRGIYYGSYIFTE--TWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIW 165
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 4127398 166 GGFSVDKATLTRFFAFHF-ILPFIIAALAMVHLLFLHETGSNNPTGVNSDADKIPFHPYYTIKD 228
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
258-358 |
3.89e-36 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 127.21 E-value: 3.89e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 258 PANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGVLALMLSILILILMPLIHTSKQRSLVFRPISQAMFWILTANLLILTW 337
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 4127398 338 IGGQPVEHPFVMIGQLASISY 358
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| petB |
CHL00070 |
cytochrome b6 |
24-208 |
1.63e-35 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 129.46 E-value: 1.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 24 PSNISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTMTAFSSVAHICRDVNYGWLIRYLHANGASMFFMCLFMHVGRGIY 103
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4127398 104 YGSYIFTE--TWNLGIILLLAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPNLVEWIWGGFSVDKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*...
gi 4127398 182 H-FILPFIIAALAMVHLLFLHETGSNNP 208
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
258-291 |
1.38e-07 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 50.56 E-value: 1.38e-07
10 20 30
....*....|....*....|....*....|....
gi 4127398 258 PANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGV 291
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
258-291 |
2.67e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 50.00 E-value: 2.67e-07
10 20 30
....*....|....*....|....*....|....
gi 4127398 258 PANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGV 291
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
258-291 |
5.25e-06 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 45.94 E-value: 5.25e-06
10 20 30
....*....|....*....|....*....|....
gi 4127398 258 PANPLNTPPHIKPEWYFLFRYAILRSIPNKLGGV 291
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
|
|
|