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Conserved domains on  [gi|3114758|emb|CAA76674|]
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single strand DNA binding protein [Campylobacter jejuni]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11483315)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
1-183 1.37e-95

single-stranded DNA-binding protein; Provisional


:

Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 275.19  E-value: 1.37e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRF-TANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFkKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    80 FEQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSG---NYENQSYDPYMSENQNFNKAKANPAPQR 156
Cdd:PRK08486  81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNypgNYNNPSQDPYMNQAQSYNQNAYAKENQQ 160
                        170       180
                 ....*....|....*....|....*..
gi 3114758   157 NQNPQHEEKLKEIDIdaydsDDTNLPF 183
Cdd:PRK08486 161 AQPPKYENSVPEIDI-----DEEEIPF 182
 
Name Accession Description Interval E-value
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
1-183 1.37e-95

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 275.19  E-value: 1.37e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRF-TANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFkKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    80 FEQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSG---NYENQSYDPYMSENQNFNKAKANPAPQR 156
Cdd:PRK08486  81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNypgNYNNPSQDPYMNQAQSYNQNAYAKENQQ 160
                        170       180
                 ....*....|....*....|....*..
gi 3114758   157 NQNPQHEEKLKEIDIdaydsDDTNLPF 183
Cdd:PRK08486 161 AQPPKYENSVPEIDI-----DEEEIPF 182
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
1-183 8.51e-62

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 188.78  E-value: 8.51e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758      1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTA-NGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDqDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     80 FEQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSnnnysgnyENQSYDPYmsENQNFNKAKANPAPQRNQN 159
Cdd:TIGR00621  83 TRKWEDQNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGS--------GNRPQGGQ--EQSATGKDPAQSAPQSGSA 152
                         170       180
                  ....*....|....*....|....
gi 3114758    160 pqheeklkeidiDAYDSDDTNLPF 183
Cdd:TIGR00621 153 ------------DPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
3-112 2.61e-44

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 142.67  E-value: 2.61e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFT-ANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFE 81
Cdd:COG0629   2 NKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKdQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81
                        90       100       110
                ....*....|....*....|....*....|.
gi 3114758   82 QWSDQNGQNRSKHSIQVENMEMLGNSNAPQQ 112
Cdd:COG0629  82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGGG 112
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
2-104 2.61e-43

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 139.68  E-value: 2.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758      2 FNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFE 81
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80
                          90       100
                  ....*....|....*....|...
gi 3114758     82 QWSDQNGQNRSKHSIQVENMEML 104
Cdd:pfam00436  81 KYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
5-104 1.06e-34

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 117.71  E-value: 1.06e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    5 VVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWS 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80
                        90       100
                ....*....|....*....|
gi 3114758   85 DQNGQNRSKHSIQVENMEML 104
Cdd:cd04496  81 DKDGQKRYGTEVVADRIEFL 100
 
Name Accession Description Interval E-value
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
1-183 1.37e-95

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 275.19  E-value: 1.37e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRF-TANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFkKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    80 FEQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSG---NYENQSYDPYMSENQNFNKAKANPAPQR 156
Cdd:PRK08486  81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNypgNYNNPSQDPYMNQAQSYNQNAYAKENQQ 160
                        170       180
                 ....*....|....*....|....*..
gi 3114758   157 NQNPQHEEKLKEIDIdaydsDDTNLPF 183
Cdd:PRK08486 161 AQPPKYENSVPEIDI-----DEEEIPF 182
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
1-183 8.51e-62

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 188.78  E-value: 8.51e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758      1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTA-NGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDqDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     80 FEQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSnnnysgnyENQSYDPYmsENQNFNKAKANPAPQRNQN 159
Cdd:TIGR00621  83 TRKWEDQNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGS--------GNRPQGGQ--EQSATGKDPAQSAPQSGSA 152
                         170       180
                  ....*....|....*....|....
gi 3114758    160 pqheeklkeidiDAYDSDDTNLPF 183
Cdd:TIGR00621 153 ------------DPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
3-112 2.61e-44

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 142.67  E-value: 2.61e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFT-ANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFE 81
Cdd:COG0629   2 NKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKdQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81
                        90       100       110
                ....*....|....*....|....*....|.
gi 3114758   82 QWSDQNGQNRSKHSIQVENMEMLGNSNAPQQ 112
Cdd:COG0629  82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGGG 112
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
2-104 2.61e-43

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 139.68  E-value: 2.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758      2 FNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFE 81
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80
                          90       100
                  ....*....|....*....|...
gi 3114758     82 QWSDQNGQNRSKHSIQVENMEML 104
Cdd:pfam00436  81 KYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
5-104 1.06e-34

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 117.71  E-value: 1.06e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    5 VVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWS 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80
                        90       100
                ....*....|....*....|
gi 3114758   85 DQNGQNRSKHSIQVENMEML 104
Cdd:cd04496  81 DKDGQKRYGTEVVADRIEFL 100
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
3-105 4.69e-32

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 113.74  E-value: 4.69e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFT--ANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK06958   5 NKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKdkASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRT 84
                         90       100
                 ....*....|....*....|....*
gi 3114758    81 EQWSDQNGQNRSKHSIQVENMEMLG 105
Cdd:PRK06958  85 RKWQGQDGQDRYSTEIVADQMQMLG 109
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
3-183 1.76e-30

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 109.29  E-value: 1.76e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFT--ANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK06863   5 NKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTdkNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKT 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    81 EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQggnfgnnsfsnnnysGNYENQSYDPymseNQNFNKAKANPAPQRNQN- 159
Cdd:PRK06863  85 RKWQDQNGQDRYTTEIQGDVLQMLGGRNQRNA---------------GGYGNSGPAP----QQSYQAGQTNNGNSQQASr 145
                        170       180
                 ....*....|....*....|....*.
gi 3114758   160 --PQHEEKLKEIDIDAYDSDdtnLPF 183
Cdd:PRK06863 146 paPQQAAPQAEPPMDGFDDD---IPF 168
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
3-183 8.68e-26

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 97.31  E-value: 8.68e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFT--ANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK05733   6 NKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTdkQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQT 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    81 EQWsDQNGQNRSKHSIQVE---NMEMLGNSnaPQQggnfgnnSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRn 157
Cdd:PRK05733  86 REW-EKDGIKRYTTEIVVDmqgTMQLLGGR--PQG-------DDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQ- 154
                        170       180
                 ....*....|....*....|....*.
gi 3114758   158 QNPQHEEklkeididAYDSDDTNLPF 183
Cdd:PRK05733 155 PAPQPAA--------DFDSFDDDIPF 172
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
3-105 1.44e-24

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 94.14  E-value: 1.44e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTR--RFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK09010   7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSEswRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRT 86
                         90       100
                 ....*....|....*....|....*...
gi 3114758    81 EQWSDQNGQNRSKHSIQVE---NMEMLG 105
Cdd:PRK09010  87 RKWTDQSGQDRYTTEVVVNvggTMQMLG 114
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
3-105 2.25e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 89.36  E-value: 2.25e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRftangEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQ 82
Cdd:PRK07459   4 NSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRR-----SRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDR 78
                         90       100
                 ....*....|....*....|....
gi 3114758    83 WSDQN-GQNRSKHSIQVENMEMLG 105
Cdd:PRK07459  79 WTDRNtGEDRSKPVIRVDRLELLG 102
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
3-183 5.06e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 90.18  E-value: 5.06e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTR--RFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK13732   7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSEswRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    81 EQWSDqNGQNRSKHSIQVE---NMEMLGnsNAPQQGGNFGNNSFSNNNYSGNYENQSYDpymSENQNFNKAKANPAPQrn 157
Cdd:PRK13732  87 RSWED-NGITRYVTEILVKttgTMQMLG--RAPQQNAQPQPGPQQNGQPQSADATKKGG---AKTKGRGRKAAQPEPQ-- 158
                        170       180
                 ....*....|....*....|....*.
gi 3114758   158 qnPQHEEKlkeidiDAYDSDDtNLPF 183
Cdd:PRK13732 159 --PQPPEG------EDYGFSD-DIPF 175
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
3-108 5.57e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 86.92  E-value: 5.57e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTR-RFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFE 81
Cdd:PRK08763   6 NKVILVGNLGNDPDIKYTQSGMTITRISLATTSvRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYD 85
                         90       100
                 ....*....|....*....|....*..
gi 3114758    82 QWSDQNGQNRSKHSIQVENMEMLGNSN 108
Cdd:PRK08763  86 KFTGQDGQERYVTEIVADEMQMLGGRG 112
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
3-100 1.43e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 75.61  E-value: 1.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAV--TRRFTANGEKREETCFIDISFYGR-TAEVANQYLTKGSKVLIEGRLR 79
Cdd:PRK06341   6 NKVILIGNLGADPEIRRTQDGRPIANLRIATseTWRDRNSGERKEKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQLQ 85
                         90       100
                 ....*....|....*....|.
gi 3114758    80 FEQWSDQNGQNRSKHSIQVEN 100
Cdd:PRK06341  86 TRKWTDQSGVERYSTEVVLQG 106
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
1-183 2.00e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 67.52  E-value: 2.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTaNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK06751   1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFA-NQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQT 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    81 EQWSDQNGQNRSKHSIQVENMEMLgnsnAPQQGGNFGNNSFSNNNYSGNYENQSYDPY-MSENQNFNKAKANPAPQRNQN 159
Cdd:PRK06751  80 RNYEGQDGKRVYVTEVLAESVQFL----EPRNGGGEQRGSFNQQPSGAGFGNQSSNPFgQSSNSGNQGNQGNSGFTKNDD 155
                        170       180
                 ....*....|....*....|....
gi 3114758   160 PqHEEKLKEIDIdaydSDDtNLPF 183
Cdd:PRK06751 156 P-FSNVGQPIDI----SDD-DLPF 173
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
1-183 6.46e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 66.06  E-value: 6.46e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRF-TANGEKreETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:PRK07275   1 MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFkSQNGER--EADFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758    80 FEQWSDQNGQNRSKHSIQVENMEMLgNSNAPQQGGNFGNNSFSNNNYSGnyeNQSYDPYMSENQNFNKakaNPAPQRNQN 159
Cdd:PRK07275  79 TRNYENQQGQRVYVTEVVADNFQML-ESRATREGGSGGSYNGGFNNAPS---ANSYSAPAQQTPNFGR---DESPFGNSN 151
                        170       180
                 ....*....|....*....|....
gi 3114758   160 PqheeklkeIDIdaydSDDtNLPF 183
Cdd:PRK07275 152 P--------MDI----SDD-DLPF 162
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
1-104 6.63e-14

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 64.67  E-value: 6.63e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTaNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF 80
Cdd:PRK06752   1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFR-NSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHT 79
                         90       100
                 ....*....|....*....|....
gi 3114758    81 EQWSDQNGQNRSKHSIQVENMEML 104
Cdd:PRK06752  80 RNYEDDQGKRIYITEVVIESITFL 103
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
1-90 1.46e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 64.01  E-value: 1.46e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRF-TANGEKreETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLR 79
Cdd:PRK07274   1 MYNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFkNQNGER--EADFINVVLWGKLAETLASYASKGSLISIDGELR 78
                         90
                 ....*....|.
gi 3114758    80 FEQWsDQNGQN 90
Cdd:PRK07274  79 TRKY-EKDGQT 88
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
2-100 2.63e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 63.97  E-value: 2.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     2 FNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFT--ANGEKREETCFIDISFYGR-TAEVANQYLTKGSKVLIEGRL 78
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKdrITSERKERTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSL 84
                         90       100
                 ....*....|....*....|..
gi 3114758    79 RFEQWSDQNGQNRSKHSIQVEN 100
Cdd:PRK06642  85 QTRKWNDNSGQEKYTTEVVLQN 106
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
5-99 3.88e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 64.28  E-value: 3.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     5 VVLVGNLTRDIEMRYAQSGSAIGASAIAVT-RRF--TANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFE 81
Cdd:PRK07772   7 ITVVGNLTADPELRFTPSGAAVANFTVASTpRTFdrQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQR 86
                         90
                 ....*....|....*...
gi 3114758    82 QWSDQNGQNRSKHSIQVE 99
Cdd:PRK07772  87 SYETREGEKRTVVELEVD 104
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
5-144 1.11e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 46.43  E-value: 1.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3114758     5 VVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTangeKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWS 84
Cdd:PRK06293   4 GYIVGRLGADPEERMTSKGKRVVVLRLGVKSRVG----SKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYV 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 3114758    85 DQNGQNRSKHSIQVENMEM--LGNSNAPQQGGNFGNNSFSNNNYSGNY--ENQSYDPYMSENQN 144
Cdd:PRK06293  80 DKDGSPQSSLVVSVDTIKFspFGRNEGSRQPSAGEDEGQQRGYDNVSIgfEGESLDTESALDKD 143
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
52-99 1.38e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 37.35  E-value: 1.38e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 3114758    52 ISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSkhSIQVE 99
Cdd:PRK08182  58 VELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERV--TFKVE 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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