NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|11182136|emb|CAC16167|]
View 

ribosome-inactivating protein [Zea mays]

Protein Classification

ribosome-inactivating family protein( domain architecture ID 10445387)

ribosome-inactivating family protein functions as an inactivator of protein synthesis, similar to Zea mays\tibosome-inactivating protein and Shigella dysenteriae Shiga toxin subunit A

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RIP pfam00161
Ribosome inactivating protein;
31-249 7.66e-66

Ribosome inactivating protein;


:

Pssm-ID: 459695  Cd Length: 197  Bit Score: 204.88  E-value: 7.66e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11182136    31 DANYPYSAFIASVRKDVIKHCTDHKGIfqPVLPPE--KKVPELWFYTELK-TRTSSMALAIRMDNLYLVAFRTPGGLWWK 107
Cdd:pfam00161   1 ATADSYRDFIEDLRKALASGDHVSHGI--PVLPPQvpPRQPARWVHVVLVnTGTSSLTLALRVDNLYLVGFRNRNGYWYE 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11182136   108 FGKDGETHLLGENPRWLGFGGRYQDLN--GNLGLETVTMARAEMPRAVNDLAKKKKMATLEEEevqmqmqmpeaadlaaa 185
Cdd:pfam00161  79 FSDGSIYAALITGSTTLPFGGSYSLLEngGGANLENVPLGRQQLEEAVSALARYPPGGAPTAD----------------- 141

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11182136   186 aaadpqadTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISKAAF 249
Cdd:pfam00161 142 --------LARALAVLIQMVCEAARFRYIERTVAAGWDEGLGVSPTGTMVKLENNWGDLSKALL 197
 
Name Accession Description Interval E-value
RIP pfam00161
Ribosome inactivating protein;
31-249 7.66e-66

Ribosome inactivating protein;


Pssm-ID: 459695  Cd Length: 197  Bit Score: 204.88  E-value: 7.66e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11182136    31 DANYPYSAFIASVRKDVIKHCTDHKGIfqPVLPPE--KKVPELWFYTELK-TRTSSMALAIRMDNLYLVAFRTPGGLWWK 107
Cdd:pfam00161   1 ATADSYRDFIEDLRKALASGDHVSHGI--PVLPPQvpPRQPARWVHVVLVnTGTSSLTLALRVDNLYLVGFRNRNGYWYE 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11182136   108 FGKDGETHLLGENPRWLGFGGRYQDLN--GNLGLETVTMARAEMPRAVNDLAKKKKMATLEEEevqmqmqmpeaadlaaa 185
Cdd:pfam00161  79 FSDGSIYAALITGSTTLPFGGSYSLLEngGGANLENVPLGRQQLEEAVSALARYPPGGAPTAD----------------- 141

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11182136   186 aaadpqadTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISKAAF 249
Cdd:pfam00161 142 --------LARALAVLIQMVCEAARFRYIERTVAAGWDEGLGVSPTGTMVKLENNWGDLSKALL 197
 
Name Accession Description Interval E-value
RIP pfam00161
Ribosome inactivating protein;
31-249 7.66e-66

Ribosome inactivating protein;


Pssm-ID: 459695  Cd Length: 197  Bit Score: 204.88  E-value: 7.66e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11182136    31 DANYPYSAFIASVRKDVIKHCTDHKGIfqPVLPPE--KKVPELWFYTELK-TRTSSMALAIRMDNLYLVAFRTPGGLWWK 107
Cdd:pfam00161   1 ATADSYRDFIEDLRKALASGDHVSHGI--PVLPPQvpPRQPARWVHVVLVnTGTSSLTLALRVDNLYLVGFRNRNGYWYE 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11182136   108 FGKDGETHLLGENPRWLGFGGRYQDLN--GNLGLETVTMARAEMPRAVNDLAKKKKMATLEEEevqmqmqmpeaadlaaa 185
Cdd:pfam00161  79 FSDGSIYAALITGSTTLPFGGSYSLLEngGGANLENVPLGRQQLEEAVSALARYPPGGAPTAD----------------- 141

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11182136   186 aaadpqadTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISKAAF 249
Cdd:pfam00161 142 --------LARALAVLIQMVCEAARFRYIERTVAAGWDEGLGVSPTGTMVKLENNWGDLSKALL 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH