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Conserved domains on  [gi|22796951|emb|CAC79751|]
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cytochrome b, partial (mitochondrion) [Megascops atricapilla]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-100 8.01e-70

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 212.45  E-value: 8.01e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYV 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-100 8.01e-70

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 212.45  E-value: 8.01e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYV 133
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-100 9.68e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 130.57  E-value: 9.68e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951   1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100
                ....*....|....*....|..
gi 22796951  79 ETWNTGIILLLTLMATAFVGYV 100
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYV 126
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-100 9.96e-35

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 122.21  E-value: 9.96e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951   1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSylYKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKp 119

                        90       100
                ....*....|....*....|....
gi 22796951  80 ---TWNTGIILLLTLMATAFVGYV 100
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYS 143
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-100 4.84e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 115.56  E-value: 4.84e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951     1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|..
gi 22796951    79 ETWNTGIILLLTLMATAFVGYV 100
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYV 117
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-100 8.01e-70

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 212.45  E-value: 8.01e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYV 133
CYTB MTH00074
cytochrome b; Provisional
 1-100 9.03e-63

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 194.51  E-value: 9.03e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYV 133
CYTB MTH00131
cytochrome b; Provisional
 1-100 3.63e-62

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 192.94  E-value: 3.63e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYV 132
CYTB MTH00100
cytochrome b; Provisional
 1-100 5.68e-61

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 189.85  E-value: 5.68e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYV 132
CYTB MTH00156
cytochrome b; Provisional
 1-100 2.69e-60

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 187.68  E-value: 2.69e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYV 122
CYTB MTH00191
cytochrome b; Provisional
 1-100 3.96e-58

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 182.04  E-value: 3.96e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYV 129
CYTB MTH00145
cytochrome b; Provisional
 1-100 3.77e-56

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 177.40  E-value: 3.77e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYV 133
CYTB MTH00034
cytochrome b; Validated
 1-100 4.73e-56

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 177.21  E-value: 4.73e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYV 132
CYTB MTH00016
cytochrome b; Validated
 1-100 1.18e-51

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 166.01  E-value: 1.18e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYV 133
CYTB MTH00022
cytochrome b; Validated
 1-100 2.77e-44

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 146.77  E-value: 2.77e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYV 131
CYTB MTH00224
cytochrome b; Provisional
 1-100 5.65e-43

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 143.52  E-value: 5.65e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYV 133
CYTB MTH00053
cytochrome b; Provisional
 1-100 7.66e-43

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 143.31  E-value: 7.66e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYV 133
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-100 9.68e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 130.57  E-value: 9.68e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951   1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100
                ....*....|....*....|..
gi 22796951  79 ETWNTGIILLLTLMATAFVGYV 100
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYV 126
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-100 9.96e-35

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 122.21  E-value: 9.96e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951   1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSylYKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKp 119

                        90       100
                ....*....|....*....|....
gi 22796951  80 ---TWNTGIILLLTLMATAFVGYV 100
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYS 143
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-100 4.84e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 115.56  E-value: 4.84e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951     1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|..
gi 22796951    79 ETWNTGIILLLTLMATAFVGYV 100
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYV 117
CYTB MTH00033
cytochrome b; Provisional
 1-100 1.72e-33

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 118.89  E-value: 1.72e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYV 129
CYTB MTH00086
cytochrome b; Provisional
 1-100 5.12e-31

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 111.57  E-value: 5.12e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100
                 ....*....|....*....|
gi 22796951   81 WNTGIILLLTLMATAFVGYV 100
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYV 121
CYTB MTH00046
cytochrome b; Validated
 2-100 2.76e-19

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 80.41  E-value: 2.76e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    2 GSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90
                 ....*....|....*....
gi 22796951   82 NTGIILLLTLMATAFVGYV 100
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYI 123
PRK03735 PRK03735
cytochrome b6; Provisional
 1-99 3.05e-13

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 62.42  E-value: 3.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|.
gi 22796951   80 -TWNTGIILLLTLMATAFVGY 99
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGY 144
petB CHL00070
cytochrome b6
 1-99 9.79e-10

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 52.80  E-value: 9.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22796951    1 FGSLLGICLMTQIITGLLLATHYTADSTLAFTSVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100
                 ....*....|....*....|.
gi 22796951   80 -TWNTGIILLLTLMATAFVGY 99
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGY 136
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-100 1.02e-07

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 46.85  E-value: 1.02e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 22796951    56 SLFFICIYLHIGRGLYYGSYLYKE--TWNTGIILLLTLMATAFVGYV 100
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYS 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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