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Conserved domains on  [gi|17932905|emb|CAC83110|]
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ATP synthase subunit 6 (mitochondrion) [Vombatus ursinus]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.84e-133

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 373.90  E-value: 2.84e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   81 STNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  161 TANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.84e-133

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 373.90  E-value: 2.84e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   81 STNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  161 TANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 13-225 3.15e-55

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 175.86  E-value: 3.15e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    13 TIMGITTLPIIMIFPCIIL----STPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLL 88
Cdd:TIGR01131  11 TLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    89 PYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:TIGR01131  91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGH 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 17932905   169 LLIHLIGSATLALSSISMTvsTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 171 LLLTLLSGLLFSLMSSAIF--ALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 4.44e-45

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 147.55  E-value: 4.44e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  65 GRTWALMLMSLILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17932905 145 ETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSIsmtVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYL 222
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
13-223 8.96e-42

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 141.09  E-value: 8.96e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    13 TIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLS-MHNTRGRTWALMLMSLILFIASTNLLGLL--- 88
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    89 PYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVS-LAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAG 167
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905   168 HLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLH 223
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-224 9.22e-30

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 109.78  E-value: 9.22e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  22 IIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLPYSFTPTTQLAMN 101
Cdd:COG0356  11 LLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVT 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905 102 IGMAIPLWLATVIMGFRNK-PKVSLAHFLPQGTPtPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATla 180
Cdd:COG0356  91 LALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLA-- 167

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 17932905 181 lssISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:COG0356 168 ---PFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.84e-133

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 373.90  E-value: 2.84e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   81 STNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  161 TANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 2.21e-93

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 272.85  E-value: 2.21e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTPK-RWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFI 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKnRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   80 ASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17932905  160 LTANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 4.80e-93

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 272.13  E-value: 4.80e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTP-KRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFI 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPtSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   80 ASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  160 LTANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-225 3.02e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 269.91  E-value: 3.02e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTP-KRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFI 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPtNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   80 ASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  160 LTANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-225 4.41e-78

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 234.07  E-value: 4.41e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTP-KRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFI 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   80 ASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  160 LTANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 13-225 3.15e-55

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 175.86  E-value: 3.15e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    13 TIMGITTLPIIMIFPCIIL----STPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLL 88
Cdd:TIGR01131  11 TLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    89 PYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:TIGR01131  91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGH 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 17932905   169 LLIHLIGSATLALSSISMTvsTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 171 LLLTLLSGLLFSLMSSAIF--ALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-225 1.83e-53

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 171.31  E-value: 1.83e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTI--MGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILF 78
Cdd:MTH00035   3 INNSIFGQFSPDTIlfIPLTLLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   79 IASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAV 158
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17932905  159 RLTANITAGHLLIHLIGSATLALSSiSMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00035 163 RLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-221 1.17e-48

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 158.79  E-value: 1.17e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIA 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   81 STNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00157  81 FNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17932905  161 TANITAGHLLIHLIGSATLALSSISMtvsTITFTILFLLTILELAVAMIQAYVFTLLVSLY 221
Cdd:MTH00157 161 AANMIAGHLLLTLLGNTGPSLSSMIL---SILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 4.44e-45

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 147.55  E-value: 4.44e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  65 GRTWALMLMSLILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17932905 145 ETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSIsmtVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYL 222
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 25-224 4.59e-42

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 142.31  E-value: 4.59e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   25 IFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLPYSFTPTTQLAMNIGM 104
Cdd:MTH00173  28 LMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  105 AIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSI 184
Cdd:MTH00173 108 ALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFS 187

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 17932905  185 SMTVST-ITFTILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00173 188 SSVVSLlLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
13-223 8.96e-42

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 141.09  E-value: 8.96e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    13 TIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLS-MHNTRGRTWALMLMSLILFIASTNLLGLL--- 88
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    89 PYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVS-LAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAG 167
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905   168 HLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLH 223
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 3.61e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 137.47  E-value: 3.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIM---GITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLIL 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNifsMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   78 FIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALA 157
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17932905  158 VRLTANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 11-226 5.35e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 121.38  E-value: 5.35e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   11 TPTIMGITTLPIIMIfpciiLSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLPY 90
Cdd:MTH00005  21 SSTAFWAFNFSIILL-----LSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPY 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   91 SFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGHLL 170
Cdd:MTH00005  96 VFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIV 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 17932905  171 IHLIG--SATLALSSISMTVSTITFTILFLLtiLELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00005 176 LSLIGiyAASALFSSISSTILLILTQMGYIL--FEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-224 7.92e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 118.61  E-value: 7.92e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    1 MNENLFAPFITPTIMGITTLPIIMIFPCII---LSTPKRWLPNRIQTLQIWLIR---QITKQMLSmhnTRGRTWALMLMS 74
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVvllLFKGIKLIPKRWQSIIEIIYNhfhGVVKDNLG---NEGLKYFPFIIS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   75 LILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPL 154
Cdd:MTH00172  78 LFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAI 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  155 ALAVRLTANITAGHLLIHLIGSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00172 158 SLGVRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-224 9.22e-30

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 109.78  E-value: 9.22e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  22 IIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLPYSFTPTTQLAMN 101
Cdd:COG0356  11 LLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVT 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905 102 IGMAIPLWLATVIMGFRNK-PKVSLAHFLPQGTPtPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATla 180
Cdd:COG0356  91 LALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLA-- 167

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 17932905 181 lssISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:COG0356 168 ---PFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 8-224 2.95e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 109.33  E-value: 2.95e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    8 PFITPTIMGITTLPIIMIFPCII---LSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNL 84
Cdd:MTH00175  19 AFLGDWLVTFTNSSMMMVLAVIIfwlLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQKYFPFILSLFLFIAILNI 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   85 LGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANI 164
Cdd:MTH00175  99 LGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANI 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17932905  165 TAGHLLIHLI-GSATLALSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00175 179 SAGHLLFAILsGFAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 10-224 1.01e-25

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 99.87  E-value: 1.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   10 ITPTIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLP 89
Cdd:PRK05815  14 FDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIP 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   90 -YSFTPTTQLAMNIGMAIPLWLATVIMGFRNKpkvSLAHFLPQGTPTPlIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:PRK05815  94 yLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLLPIEIISEFSRPISLSLRLFGNMLAGE 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  169 LLIHLIGSatlaLSSISMTVSTITFTILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:PRK05815 170 LILALIAL----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 38-224 2.49e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 91.54  E-value: 2.49e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   38 LPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGF 117
Cdd:MTH00174  60 VPNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGL 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  118 RNKPKVSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSISMTV-STITFTIL 196
Cdd:MTH00174 140 ITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAIL 219

                        170       180
                 ....*....|....*....|....*...
gi 17932905  197 FLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00174 220 IFVTILEMAVAIIQAYVFTLLTIVYLRD 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 1.20e-20

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 88.26  E-value: 1.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   72 LMSLILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFR-NKPKVSLAHfLPQGTPTPLIPMLIIIETISLF 150
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17932905  151 IQPLALAVRLTANITAGHLLI-HLIGSATLALSSISMTVSTITFTILFLLtiLELAVAMIQAYVFTLLVSLYL 222
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIVIlSLIFISFILKSYIVAVAVSVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 74-222 8.04e-14

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 67.31  E-value: 8.04e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   74 SLILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSlaHFLPQGTPTPLIPM-LIIIETISLFIQ 152
Cdd:MTH00087  57 FTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTFsMLFVEIVSELSR 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905  153 PLALAVRLTANITAGHLLIHLIgsatlalssISMTVSTITFTILFLLtiLELAVAMIQAYVFTLLVSLYL 222
Cdd:MTH00087 135 PLALTLRLTVNLMVGHLISSLL---------NFLGEKYVWLSILAIM--MECFVAFIQSYIFSRLIYLYL 193
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 4.19e-09

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 55.67  E-value: 4.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   93 TPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETI-SLFIQPLALAVRLTANITAGHLLI 171
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 17932905  172 -HLIGSATLALSSISMTVSTITFTILFlltILELAVAMIQAYVFTLLVSLYL 222
Cdd:PRK13417 297 lALMGFIFQFQSWGIVPVSVIGSGLIY---VLEIFVAFLQAYIFVLLTSLFV 345
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 7-217 7.99e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 48.15  E-value: 7.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905    7 APFITPTIMGITTLPI------------IMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMS 74
Cdd:PRK13421   4 SPLSTVPLFSLGPVPIsapvvvtwaimaVLAAGSALATRRLSLAPGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   75 LILFIASTNLLGLLPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNK-PKVSLAHFLpqgTPTPLIPMLIIIETISlfiQP 153
Cdd:PRK13421  84 LFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVRARgVRGYLATFA---EPTWVMIPLNLVEQLT---RT 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17932905  154 LALAVRLTANITAGHLLIHLIgsatLALSSISMTVStitftilflLTILELAVAMIQAYVFTLL 217
Cdd:PRK13421 158 FSLIVRLFGNVMSGVFVIGIV----LSLAGLLVPIP---------LMALDLLTGAVQAYIFAVL 208
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 10-222 1.15e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 42.04  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   10 ITPTIMGITTLPIIMIFPCIILSTPKRWLPNRIQTLQIWLIRQITKQMLSMHNTRGRTWALMLMSLILFIASTNLLGLLP 89
Cdd:PRK13420  16 ITESVLTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIP 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   90 YSFTPTTQLAMNIGMAIPLWLATVIMGFRNKP-KVSLAHFLpqgTPTPLipmLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:PRK13420  96 GFHSPTADLSVTAALALLVFFSVHWFGIRAEGlREYLKHYL---SPSPF---LLPFHLISEITRTLALAVRLFGNIMSLE 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 17932905  169 LLIHLIGSATLALSSISmtvstitftiLFLLTILElavAMIQAYVFTLLVSLYL 222
Cdd:PRK13420 170 LAALLVLLVAGFLVPVP----------ILMLHIIE---ALVQAYIFGMLALIYI 210
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 71-215 3.16e-04

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 39.87  E-value: 3.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17932905   71 MLMSLILFIASTNLLGL-LPYSFTPTTQLAMNIGMAIPLWLATVIMGFRNKPKVSLAHFLPQGTPTPLIPMLIIIETISL 149
Cdd:MTH00050  24 YYYSVVLFIVLFLFLLYrLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISY 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17932905  150 FIQPLALAVRLTANITAGHLlihligsATLALSSISMtVSTITFTILFLLTILELAVAMIQAYVFT 215
Cdd:MTH00050 104 IIRPVVLILRPFINISLGCF-------GGVALGNLCF-ISYWWFLVLFFLFFYEVFVALVHWFIVS 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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