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Conserved domains on  [gi|1905442732|emb|CAD5311244|]
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Plasmid conjugative transfer entry exclusion protein TraS (plasmid) [Salmonella enterica subsp. enterica serovar Typhimurium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraS super family cl11236
Plasmid conjugative transfer entry exclusion protein TraS; Entry exclusion (Eex) is a process ...
 1-162 3.08e-80

Plasmid conjugative transfer entry exclusion protein TraS; Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer. TraS on the recipient cell is known to form an interaction with TraG on the donor cell.


The actual alignment was detected with superfamily member pfam10624:

Pssm-ID: 463167  Cd Length: 162  Bit Score: 234.51  E-value: 3.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905442732   1 MKNLAQIVLVTVVQFIACYLAEWGVAETGIILLFVLLWQGLFIWLFIQIRKKNNISDEFKFSKGIWYVIMPVCSLLSPLL 80
Cdd:pfam10624   1 MGMKALAQIVLVTQFIACACAEAEVAEAEIGIIFLFLLLGLFIFIFIFIQIKKKINDEDEFKFGIGIVIMIMCSCLLLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905442732  81 SLMIFIGGTLYELRRVSGCISIKEWVKCQLDDQYDEDRGLDFESVEYRQTTYYNPSTGYPMHGGVDSAGNTFGSRWQDNN 160
Cdd:pfam10624  81 LLMIFIFGGGTELELRRGCGCIKEKEKCKCDDDDDEDEDLDFDFEEVEQRQTTNPNPGTGMHGGGDSAGAGFGFGSQDND 160


                  ..
gi 1905442732 161 DR 162
Cdd:pfam10624 161 DN 162
 
Name Accession Description Interval E-value
TraS pfam10624
Plasmid conjugative transfer entry exclusion protein TraS; Entry exclusion (Eex) is a process ...
 1-162 3.08e-80

Plasmid conjugative transfer entry exclusion protein TraS; Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer. TraS on the recipient cell is known to form an interaction with TraG on the donor cell.


Pssm-ID: 463167  Cd Length: 162  Bit Score: 234.51  E-value: 3.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905442732   1 MKNLAQIVLVTVVQFIACYLAEWGVAETGIILLFVLLWQGLFIWLFIQIRKKNNISDEFKFSKGIWYVIMPVCSLLSPLL 80
Cdd:pfam10624   1 MGMKALAQIVLVTQFIACACAEAEVAEAEIGIIFLFLLLGLFIFIFIFIQIKKKINDEDEFKFGIGIVIMIMCSCLLLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905442732  81 SLMIFIGGTLYELRRVSGCISIKEWVKCQLDDQYDEDRGLDFESVEYRQTTYYNPSTGYPMHGGVDSAGNTFGSRWQDNN 160
Cdd:pfam10624  81 LLMIFIFGGGTELELRRGCGCIKEKEKCKCDDDDDEDEDLDFDFEEVEQRQTTNPNPGTGMHGGGDSAGAGFGFGSQDND 160


                  ..
gi 1905442732 161 DR 162
Cdd:pfam10624 161 DN 162
 
Name Accession Description Interval E-value
TraS pfam10624
Plasmid conjugative transfer entry exclusion protein TraS; Entry exclusion (Eex) is a process ...
 1-162 3.08e-80

Plasmid conjugative transfer entry exclusion protein TraS; Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer. TraS on the recipient cell is known to form an interaction with TraG on the donor cell.


Pssm-ID: 463167  Cd Length: 162  Bit Score: 234.51  E-value: 3.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905442732   1 MKNLAQIVLVTVVQFIACYLAEWGVAETGIILLFVLLWQGLFIWLFIQIRKKNNISDEFKFSKGIWYVIMPVCSLLSPLL 80
Cdd:pfam10624   1 MGMKALAQIVLVTQFIACACAEAEVAEAEIGIIFLFLLLGLFIFIFIFIQIKKKINDEDEFKFGIGIVIMIMCSCLLLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905442732  81 SLMIFIGGTLYELRRVSGCISIKEWVKCQLDDQYDEDRGLDFESVEYRQTTYYNPSTGYPMHGGVDSAGNTFGSRWQDNN 160
Cdd:pfam10624  81 LLMIFIFGGGTELELRRGCGCIKEKEKCKCDDDDDEDEDLDFDFEEVEQRQTTNPNPGTGMHGGGDSAGAGFGFGSQDND 160


                  ..
gi 1905442732 161 DR 162
Cdd:pfam10624 161 DN 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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