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Conserved domains on  [gi|31442127|emb|CAD67993|]
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ATP synthase A chain subunit 6 (mitochondrion) [Periphyllus bulgaricus]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009593)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-217 3.45e-62

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214441  Cd Length: 223  Bit Score: 193.08  E-value: 3.45e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLiLNLELNWISTMMIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYkSKNFKAPSFMFISLFMF 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLL-GPKNKGSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   81 IFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSLSI 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31442127  161 RLTANLIAGHLLMTLL------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00157 159 RLAANMIAGHLLLTLLgntgpsLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-217 3.45e-62

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 193.08  E-value: 3.45e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLiLNLELNWISTMMIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYkSKNFKAPSFMFISLFMF 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLL-GPKNKGSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   81 IFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSLSI 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31442127  161 RLTANLIAGHLLMTLL------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00157 159 RLAANMIAGHLLLTLLgntgpsLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 73-216 6.10e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 118.66  E-value: 6.10e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  73 MFISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIF 152
Cdd:cd00310   7 LLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISEL 86

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127 153 IRPLSLSIRLTANLIAGHLLMTLL------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSS 216
Cdd:cd00310  87 IRPLSLSVRLFANMFAGHLLLALLsglvpsLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-217 8.90e-32

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 115.38  E-value: 8.90e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127     5 LFNIFDPTTL-ILNLELNWISTM----MIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYKSKNFKAPSFMFiSLFM 79
Cdd:TIGR01131   1 LFSQFDISPItLFSLTLLSLILLlsllIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF-TLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    80 FIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSLS 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31442127   160 IRLTANLIAGHLLMTLL-------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLsgllfslMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLND 224
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 73-214 2.63e-21

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 87.44  E-value: 2.63e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  73 MFISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKN-TKNMIAHLIpLNTPIYLAPLMTIIETMSI 151
Cdd:COG0356  60 LLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLF-FPPFPWLAPLMLPIEIISE 138

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31442127 152 FIRPLSLSIRLTANLIAGHLLMTLL----NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:COG0356 139 LARPLSLSLRLFGNMFAGHIILLLLaglaPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVY 205
ATP-synt_A pfam00119
ATP synthase A chain;
73-216 3.95e-21

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 87.16  E-value: 3.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    73 MFISLFMFIFLNNFFSLF---PYIFSSSSHMIFSMTLAMPFWLFYIILSM-CKNTKNMIAHLIPLNTPIYLAPLMTIIET 148
Cdd:pfam00119  60 LLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIkKHGLGGYFKKLFVPPVPLPLVPLLLPIEI 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31442127   149 MSIFIRPLSLSIRLTANLIAGHLLMTLL---------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSS 216
Cdd:pfam00119 140 ISEFARPVSLSLRLFGNMLAGHLLLLLLaglifallsAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-217 3.45e-62

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 193.08  E-value: 3.45e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLiLNLELNWISTMMIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYkSKNFKAPSFMFISLFMF 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLL-GPKNKGSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   81 IFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSLSI 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31442127  161 RLTANLIAGHLLMTLL------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00157 159 RLAANMIAGHLLLTLLgntgpsLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-217 1.90e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 124.85  E-value: 1.90e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLILNLELN----WISTMMIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYkSKNFKAPSFMFIS 76
Cdd:MTH00005   1 MLTDIFSSFDPATNSLFNNLSstafWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTF-GKHLKGFSSLISA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   77 LFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPL 156
Cdd:MTH00005  80 LFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPI 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  157 SLSIRLTANLIAGHLLMTLLNF---------NSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00005 160 TLSFRLAANMSAGHIVLSLIGIyaasalfssISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 73-216 6.10e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 118.66  E-value: 6.10e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  73 MFISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIF 152
Cdd:cd00310   7 LLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISEL 86

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127 153 IRPLSLSIRLTANLIAGHLLMTLL------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSS 216
Cdd:cd00310  87 IRPLSLSVRLFANMFAGHLLLALLsglvpsLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-217 2.11e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 116.97  E-value: 2.11e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLiLNLELNWISTMMIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYKSKNFKAPSFMFISLFMF 80
Cdd:MTH00179   1 MMLSMFDQFESPSL-LGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   81 IFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSLSI 160
Cdd:MTH00179  80 LLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGV 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31442127  161 RLTANLIAGHLLMTLLN---------FNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00179 160 RLTANITAGHLLMHLISsavfvlmnfMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-217 4.04e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 116.08  E-value: 4.04e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLILnlelnwISTMMIIILMPNFLWIMP------NRINWILTKINKMLNKEMMMLYKSKNFKApSFMF 74
Cdd:MTH00120   1 MNLNFFDQFSSPELLG------IPLILLAMLIPALLIPSPknrlltNRLTTLQLWLIKLITKQLMLPLNKKGHKW-ALIL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   75 ISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIR 154
Cdd:MTH00120  74 TSLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIR 153

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31442127  155 PLSLSIRLTANLIAGHLLMTLL---------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00120 154 PLALGVRLTANLTAGHLLIQLIstatlnllpTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-214 5.96e-32

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 115.82  E-value: 5.96e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLIlnlelnWISTMMIIILMPNFLWIMPNR-INWILTKIN----KMLNKEMMMLYKSKNfKAPSFMFI 75
Cdd:MTH00101   1 MNENLFASFITPTIL------GLPIVTLIIMFPSLLFPTPNRlINNRLISIQqwliQLTSKQMMTIHNTKG-QTWSLMLM 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   76 SLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRP 155
Cdd:MTH00101  74 SLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQP 153

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31442127  156 LSLSIRLTANLIAGHLLM--------TLLNFNSLM-MIILIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:MTH00101 154 MALAVRLTANITAGHLLIhliggatlALMSISTTTaLITFIILILLTILEFAVALIQAYVFTLLVSLY 221
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-217 7.88e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 115.35  E-value: 7.88e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLILNLE--LNWISTMMIIILMPNFLWIMPNRINWILTkINKMLNKEMMMLYKSKNFKAPSFMFISLF 78
Cdd:MTH00173   1 MMVDLFSSFDDHNSSFSSLsfLMWLLSLMSLFFFSSSVWVSSSNLSSVFK-LFVLTVSSQVTRSSGLNLGGFSLLLSSLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   79 MFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSL 158
Cdd:MTH00173  80 LFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31442127  159 SIRLTANLIAGHLLMTL-------LNFNS---LMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00173 160 TVRLLANISAGHIVLTLignylssSLFSSsvvSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-217 8.90e-32

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 115.38  E-value: 8.90e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127     5 LFNIFDPTTL-ILNLELNWISTM----MIIILMPNFLWIMPNRINWILTKINKMLNKEMMMLYKSKNFKAPSFMFiSLFM 79
Cdd:TIGR01131   1 LFSQFDISPItLFSLTLLSLILLlsllIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF-TLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    80 FIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSLS 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31442127   160 IRLTANLIAGHLLMTLL-------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLsgllfslMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLND 224
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-217 1.34e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 112.43  E-value: 1.34e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDP--TTLILNLELNWISTMMIIILMPNFLWIMPNRINWILTKInKMLNKEMMMLYKSKNFKAPSFMFISLF 78
Cdd:MTH00176   1 MLVDLFSSFDPpnKNIFSMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMF-STFLPEMILRSNGSYILGSASIIISLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   79 MFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLSL 158
Cdd:MTH00176  80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31442127  159 SIRLTANLIAGHLLMTLLNFNS---------LMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00176 160 AVRLAANLSAGHLLLGLLGAAMwgllpvsplIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDE 227
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 4-217 1.22e-27

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 104.67  E-value: 1.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    4 NLFNIFDPTTLILnLELNWISTMMIIIlmpnFLWIMPNrINWILTKIN----KMLNKEMMMLYKSKNFKAPSF--MFISL 77
Cdd:MTH00035   6 SIFGQFSPDTILF-IPLTLLSSVIALS----WLFFINP-TNWLPSRSQsiwlTFRQEILKLIFQNTNPNTAPWagLLTTV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   78 FMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIRPLS 157
Cdd:MTH00035  80 FILILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIA 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31442127  158 LSIRLTANLIAGHLLMTLL--------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00035 160 LGLRLAANLTAGHLLIFLLstaiwelsNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQ 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-217 2.17e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 103.89  E-value: 2.17e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    1 MMMNLFNIFDPTTLIlnlelnWISTMMIIILMPNFLWIMP------NRINWILTKINKMLNKEMMMLYKSKNFKApSFMF 74
Cdd:MTH00073   1 MNLSFFDQFLSPTLL------GIPLIMLAMLLPWLLFPTPtnkwlnNRLSTLQIWFLQNFTKQLMLPLNTPGHKW-ALIL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   75 ISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIR 154
Cdd:MTH00073  74 TSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIR 153

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31442127  155 PLSLSIRLTANLIAGHLLMTLLNFNSLMM---------IILIIQMFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00073 154 PLALGVRLTANLTAGHLLIQLISTATLVLlplmptvsiLTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 73-217 2.72e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 103.41  E-value: 2.72e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   73 MFISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIF 152
Cdd:MTH00132  72 LLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLF 151

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31442127  153 IRPLSLSIRLTANLIAGHLLMTLLNFNSLMM--------IILIIQMFMM-MFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00132 152 IRPLALGVRLTANLTAGHLLIQLIATAAFVLlplmptvaILTATLLFLLtLLEVAVAMIQAYVFVLLLSLYLQE 225
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 73-214 2.63e-21

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 87.44  E-value: 2.63e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  73 MFISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKN-TKNMIAHLIpLNTPIYLAPLMTIIETMSI 151
Cdd:COG0356  60 LLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLF-FPPFPWLAPLMLPIEIISE 138

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31442127 152 FIRPLSLSIRLTANLIAGHLLMTLL----NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:COG0356 139 LARPLSLSLRLFGNMFAGHIILLLLaglaPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVY 205
ATP-synt_A pfam00119
ATP synthase A chain;
73-216 3.95e-21

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 87.16  E-value: 3.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127    73 MFISLFMFIFLNNFFSLF---PYIFSSSSHMIFSMTLAMPFWLFYIILSM-CKNTKNMIAHLIPLNTPIYLAPLMTIIET 148
Cdd:pfam00119  60 LLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIkKHGLGGYFKKLFVPPVPLPLVPLLLPIEI 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31442127   149 MSIFIRPLSLSIRLTANLIAGHLLMTLL---------NFNSLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLYSS 216
Cdd:pfam00119 140 ISEFARPVSLSLRLFGNMLAGHLLLLLLaglifallsAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 75-214 2.13e-19

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 82.78  E-value: 2.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   75 ISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIR 154
Cdd:MTH00172  76 ISLFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISR 155

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31442127  155 PLSLSIRLTANLIAGHLLMTLLNFNSLMMII---------LIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:MTH00172 156 AISLGVRLAANLSAGHLLFAILAGFGFNMLCasgflslfpLLIMVFITLLEIAVAVIQAYVFCLLTTIY 224
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 75-214 6.27e-19

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 81.98  E-value: 6.27e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   75 ISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIR 154
Cdd:MTH00175  87 LSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIR 166

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  155 PLSLSIRLTANLIAGHLLMTLLN---FNSLMM-------IILIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:MTH00175 167 AISLGVRLAANISAGHLLFAILSgfaFNMLSNgliilslFPMLIMIFITLLEMAVAVIQAYVFCLLTTIY 236
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 73-214 4.15e-16

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 74.06  E-value: 4.15e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   73 MFISLFMFIFLNNFFSLFP-YIFSSSSHMIFSMTLAMPFWLFYIILSMCKN-TKNMIAHLIPLNTPIylaplMTIIETMS 150
Cdd:PRK05815  75 LAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKKgLGGYLKEFYLQPHPL-----LLPIEIIS 149

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31442127  151 IFIRPLSLSIRLTANLIAGHLLMTLLNFNSLMMII-----LIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:PRK05815 150 EFSRPISLSLRLFGNMLAGELILALIALLGGAGLLlalapLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 75-214 2.85e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 66.50  E-value: 2.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   75 ISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIFIR 154
Cdd:MTH00174  95 LSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISR 174

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  155 PLSLSIRLTANLIAGHLLMTLLNFNSLMMI---ILI-------IQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:MTH00174 175 AISLGVRLAANISSGHLLFSIIASFAWKMIntgILIgsfvpfaILIFVTILEMAVAIIQAYVFTLLTIVY 244
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 75-214 1.46e-12

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 65.53  E-value: 1.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   75 ISLFMFIFLNNFFSLFPYIFSSSSHMifSMTLAMPFWLFYI-----ILSMckNTKNMIAHLIPlNTPIYLAPLMTIIETM 149
Cdd:PRK13419 175 LTVFFFILVCNLLGLVPYGATATGNI--NVTLTLAVFTFFItqyaaIKAH--GIKGYLAHLTG-GTHWSLWIIMIPIEFI 249

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31442127  150 SIFIRPLSLSIRLTANLIAGHLLMTLLNFNSLMMIILIIQM--------FMMMFEMCVALIQSYVFSILSSLY 214
Cdd:PRK13419 250 GLFTKPFALTVRLFANMTAGHIVILSLIFISFILKSYIVAVavsvpfaiFIYLLELFVAFLQAYIFTMLSALF 322
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 64-217 5.96e-12

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 61.92  E-value: 5.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   64 SKNFKAPSFMFISLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKnmIAHLIPLNTPIYLAPL- 142
Cdd:MTH00087  45 SNKLPLSSVISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEK--FSVYLSKGSDSFLKTFs 122

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31442127  143 MTIIETMSIFIRPLSLSIRLTANLIAGHLLMTLLNFNSLMMIILIIqmFMMMFEMCVALIQSYVFSILSSLYSSE 217
Cdd:MTH00087 123 MLFVEIVSELSRPLALTLRLTVNLMVGHLISSLLNFLGEKYVWLSI--LAIMMECFVAFIQSYIFSRLIYLYLNE 195
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 73-211 1.06e-04

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 41.41  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   73 MFISLFMFIFLNnffslFPYIFSSSSHMIFSMTLAMPFWLFYIILSMCKNTKNMIAHLIPLNTPIYLAPLMTIIETMSIF 152
Cdd:MTH00050  30 LFIVLFLFLLYR-----LPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISYI 104

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31442127  153 IRPLSLSIRLTANLIAGHLL-MTLLNFNSLMMIILIIQMFMMMFEMCVALIQSY-VFSILS 211
Cdd:MTH00050 105 IRPVVLILRPFINISLGCFGgVALGNLCFISYWWFLVLFFLFFYEVFVALVHWFiVSSILS 165
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 127-214 1.28e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 39.10  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127  127 IAHLIPLNTPIYLAPLMTIIE-TMSIFIRPLSLSIRLTANLIAGH-LLMTLLNFN------SLMMIILIIQMFMMMFEMC 198
Cdd:PRK13417 249 IWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHvIILALMGFIfqfqswGIVPVSVIGSGLIYVLEIF 328

                         90
                 ....*....|....*.
gi 31442127  199 VALIQSYVFSILSSLY 214
Cdd:PRK13417 329 VAFLQAYIFVLLTSLF 344
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 76-214 8.83e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 36.21  E-value: 8.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31442127   76 SLFMFIFLNNFFSLFPYIFSSSSHMIFSMTLAMPFWLFYIILSMckNTKNMIAHLIPLNTPIYLAPLMTIIETMSifiRP 155
Cdd:PRK13421  83 TLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGV--RARGVRGYLATFAEPTWVMIPLNLVEQLT---RT 157

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 31442127  156 LSLSIRLTANLIAGHLLMTLLnfnsLMMIILIIQMFMMMFEMCVALIQSYVFSILSSLY 214
Cdd:PRK13421 158 FSLIVRLFGNVMSGVFVIGIV----LSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMVF 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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