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Concise Results
Standard Results
Full Results
unnamed protein product [Arabidopsis lyrata]
Protein Classification
photosystem I P700 chlorophyll a apoprotein A2 ( domain architecture ID 10000058 )
photosystem I P700 chlorophyll a apoprotein A2 (PsaB), together with PsaA, forms a heterodimer that binds P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX
List of domain hits
Name
Accession
Description
Interval
E-value
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-734
0e+00
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 1591.67
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 1 MALRFP R FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ N IFASHFGQLAIIFLWTSGNLFHVAWQGNFE T WVQD 80
Cdd:CHL00054 1 MALRFP K FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ K IFASHFGQLAIIFLWTSGNLFHVAWQGNFE A WVQD 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLI G GWLHLQPK 160
Cdd:CHL00054 81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLI A GWLHLQPK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 161 WKP R VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP A SRGE Y VRWNNFL N VLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:CHL00054 161 WKP S VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP E SRGE H VRWNNFL D VLPHPQGLGPLFTGQWNLYAQNPDSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 241 SHLFGTSQG S GTAILT L LGGFHPQTQSLWLTD M AHHHLAIA IL FLIAGHMYRTNFGIGHS I KD L LEAHIPPGGRLGRGHK 320
Cdd:CHL00054 241 SHLFGTSQG A GTAILT F LGGFHPQTQSLWLTD I AHHHLAIA VV FLIAGHMYRTNFGIGHS M KD I LEAHIPPGGRLGRGHK 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 321 GLYDTINNS I HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:CHL00054 321 GLYDTINNS L HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:CHL00054 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 481 T SG PAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:CHL00054 481 T NS PAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:CHL00054 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW K DKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:CHL00054 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW R DKPVALSIVQARLVGLAHFSVGYIFT 720
730
....*....|....
gi 2274917999 721 YAAFLIASTSGKFG 734
Cdd:CHL00054 721 YAAFLIASTSGKFG 734
Name
Accession
Description
Interval
E-value
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-734
0e+00
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 1591.67
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 1 MALRFP R FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ N IFASHFGQLAIIFLWTSGNLFHVAWQGNFE T WVQD 80
Cdd:CHL00054 1 MALRFP K FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ K IFASHFGQLAIIFLWTSGNLFHVAWQGNFE A WVQD 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLI G GWLHLQPK 160
Cdd:CHL00054 81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLI A GWLHLQPK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 161 WKP R VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP A SRGE Y VRWNNFL N VLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:CHL00054 161 WKP S VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP E SRGE H VRWNNFL D VLPHPQGLGPLFTGQWNLYAQNPDSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 241 SHLFGTSQG S GTAILT L LGGFHPQTQSLWLTD M AHHHLAIA IL FLIAGHMYRTNFGIGHS I KD L LEAHIPPGGRLGRGHK 320
Cdd:CHL00054 241 SHLFGTSQG A GTAILT F LGGFHPQTQSLWLTD I AHHHLAIA VV FLIAGHMYRTNFGIGHS M KD I LEAHIPPGGRLGRGHK 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 321 GLYDTINNS I HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:CHL00054 321 GLYDTINNS L HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:CHL00054 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 481 T SG PAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:CHL00054 481 T NS PAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:CHL00054 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW K DKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:CHL00054 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW R DKPVALSIVQARLVGLAHFSVGYIFT 720
730
....*....|....
gi 2274917999 721 YAAFLIASTSGKFG 734
Cdd:CHL00054 721 YAAFLIASTSGKFG 734
psaB
TIGR01336 photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, ...
2-734
0e+00
photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130403
Cd Length: 734
Bit Score: 1436.29
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 2 A LR FP R FSQ G LAQDPTTRRIW F GIATAHDFESHD DI TEE R LYQ N IFASHFG Q LAIIFLWTSGNLFHVAWQGNFE T W V QDP 81
Cdd:TIGR01336 1 A TK FP K FSQ D LAQDPTTRRIW Y GIATAHDFESHD GM TEE N LYQ K IFASHFG H LAIIFLWTSGNLFHVAWQGNFE Q W I QDP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 82 LHVRPIAHAIWDPHFGQPAVEAFTRGGA LG PVNI A YSGVY Q WWYTIG L RTN E DLY T GALFLL F L S AL S L IG GWLHLQPK W 161
Cdd:TIGR01336 81 LHVRPIAHAIWDPHFGQPAVEAFTRGGA NY PVNI S YSGVY H WWYTIG M RTN S DLY A GALFLL I L A AL C L FA GWLHLQPK F 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 162 KP RV SWFKNAESRLNHHLSGLFGVSSLAW T GHL V HVAIPASRG EY V R WNNFL NV LPHP Q GL G P L FTG Q W NL YAQNPD SS S 241
Cdd:TIGR01336 161 KP SL SWFKNAESRLNHHLSGLFGVSSLAW A GHL I HVAIPASRG QH V G WNNFL ST LPHP A GL K P F FTG N W GV YAQNPD TA S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 242 H L FGTSQGSGTAILT L LGGFHPQTQSLWLTDMAHHHLAIA IL F L IAGHMYRTNFGIGHSIKD L LEAH I PP - G G RL G R GHK 320
Cdd:TIGR01336 241 H V FGTSQGSGTAILT F LGGFHPQTQSLWLTDMAHHHLAIA VI F I IAGHMYRTNFGIGHSIKD M LEAH K PP p S G KF G L GHK 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 321 GLYDTINNS I HFQLGLALA S LGVITSLVAQHMYSLP A YAFIAQDFTTQAALYTHHQYIAGF I M T GAFAHGAIFF I RDY N P 400
Cdd:TIGR01336 321 GLYDTINNS L HFQLGLALA C LGVITSLVAQHMYSLP P YAFIAQDFTTQAALYTHHQYIAGF L M V GAFAHGAIFF V RDY D P 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 401 EQN E DNVL A RML D HKEAIISHLSW A SLFLGFHTLGLYVHNDV ML AFGTPEKQILIEPIFAQWIQ S AHGKT S YGF D VLLSS 480
Cdd:TIGR01336 401 EQN K DNVL D RML E HKEAIISHLSW V SLFLGFHTLGLYVHNDV VV AFGTPEKQILIEPIFAQWIQ A AHGKT L YGF N VLLSS 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 481 T S GP A FN A GR S I WLPGWL N AIN E N S NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:TIGR01336 481 P S SS A TT A YG S V WLPGWL D AIN S N T NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT L WQGNVSQFNESSTYLMGW L RDYLWLNSSQLINGYNP F GM 640
Cdd:TIGR01336 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT I WQGNVSQFNESSTYLMGW F RDYLWLNSSQLINGYNP Y GM 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 641 N S LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL A WAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGY IF T 720
Cdd:TIGR01336 641 N N LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL V WAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGY VL T 720
730
....*....|....
gi 2274917999 721 YAAFLIAST S GKFG 734
Cdd:TIGR01336 721 YAAFLIAST A GKFG 734
PsaB
COG5702 Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-734
0e+00
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 1284.06
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 1 MA LR FP R FSQ G LAQDPTTRRIW F GIATAHDFESHD DI TEE R LYQ N IFA S HFG Q LAIIFLW T SGNLFHVAWQGNFE T W V QD 80
Cdd:COG5702 1 MA TK FP K FSQ D LAQDPTTRRIW Y GIATAHDFESHD GM TEE N LYQ K IFA T HFG H LAIIFLW S SGNLFHVAWQGNFE Q W I QD 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 81 PL H VRPIAHAIWDPHFG Q PA V EAFT RG GA LG PVNI A YSG V Y Q WWYTIG L RTN E DLY T G AL FLL F L S A LS L IG GWLHLQPK 160
Cdd:COG5702 81 PL N VRPIAHAIWDPHFG K PA I EAFT QA GA SN PVNI C YSG L Y H WWYTIG M RTN T DLY Q G SI FLL L L A A VM L FA GWLHLQPK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 161 WK P RVS WFKNAESRLNHHL S GLFGVSSLAWTGHLVHVAIP A SRG EY V R W N NFL NV LPHP Q GL G P L FTG Q W NL YAQNPD SS 240
Cdd:COG5702 161 FR P SLA WFKNAESRLNHHL A GLFGVSSLAWTGHLVHVAIP E SRG QH V G W D NFL ST LPHP A GL A P F FTG N W GV YAQNPD TA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 241 S H L FGTSQG S GTAILT L LGGFHPQT Q SLWLTD M AHHHLAIA IL F L IAGHMYRTNFGIGHSIK DL LEAH IP PG G ---- RL G 316
Cdd:COG5702 241 G H A FGTSQG A GTAILT F LGGFHPQT E SLWLTD I AHHHLAIA VI F I IAGHMYRTNFGIGHSIK EI LEAH QG PG R sgff KT G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 317 R GHKGLYDTINNS I HFQLGLALA S LGVITSLVAQHMY S LP A YAFIAQD F TTQAALYTHHQYIAGF I M T GAFAHGAIFF I R 396
Cdd:COG5702 321 L GHKGLYDTINNS L HFQLGLALA C LGVITSLVAQHMY A LP P YAFIAQD Y TTQAALYTHHQYIAGF L M I GAFAHGAIFF V R 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 397 DY N PE Q N E DNVLARML D HKEAIISHLSW A SLFLGFHTLGLYVHNDV ML AFGTPEKQILIEP I FAQ W IQ S AHGK TS YG F D V 476
Cdd:COG5702 401 DY D PE A N K DNVLARML E HKEAIISHLSW V SLFLGFHTLGLYVHNDV VV AFGTPEKQILIEP V FAQ F IQ A AHGK VL YG I D T 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 477 LLS STSGP A FN A GR --- SI WLPGWL N A I N ENS NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 553
Cdd:COG5702 481 LLS NPDSV A ST A WP nyg NV WLPGWL E A V N NGA NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 554 GY S FPCDGPGRGGTCDISAWD A FYLA V FWMLNTIGWVTFYWHWKH ITL W Q GNV S QFNESSTYLMGW L RDYLW L NS S QLIN 633
Cdd:COG5702 561 GY A FPCDGPGRGGTCDISAWD S FYLA T FWMLNTIGWVTFYWHWKH LSI W S GNV A QFNESSTYLMGW F RDYLW A NS A QLIN 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 634 GY N PFG M NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL A WAHERTPLANL I RWKDKPVALSIVQARLVGL A HF 713
Cdd:COG5702 641 GY S PFG T NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL V WAHERTPLANL V RWKDKPVALSIVQARLVGL T HF 720
730 740
....*....|....*....|.
gi 2274917999 714 S VGYI F TYAAFLIAST SGK F G 734
Cdd:COG5702 721 T VGYI V TYAAFLIAST ASL F P 741
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
8-727
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 1115.24
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 8 FSQ G LAQ D P - TTR R IW FGI ATAHDFESHD DI TEE r L YQN IF AS HFG Q LAIIFLW T SGNLFH V AW QG NFE T W VQ DPLHV R P 86
Cdd:pfam00223 1 FSQ D LAQ G P k TTR W IW NLH ATAHDFESHD GD TEE - L SRK IF SA HFG H LAIIFLW L SGNLFH G AW FS NFE A W LA DPLHV K P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 87 IAH AI W d PHFGQ PAVE AFT RG GA LG P - V N I A y SG VY QWW Y TIG LR TN ED LY T GA LF LL F L S AL S L IG GWLH LQ p K WK P RV 165
Cdd:pfam00223 80 IAH VV W - PHFGQ EILN AFT DV GA GF P g V Q I T - SG LF QWW R TIG MT TN GQ LY A GA IG LL I L A AL M L FA GWLH YH - K FA P KL 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 166 S WFKNAES R LNHHL S GLFG VS SLAWTGHL V HVAIP A SR GEYVRWNNFLNV LPHP --------------- Q GLGP L FTG Q W 230
Cdd:pfam00223 157 E WFKNAES M LNHHL A GLFG LG SLAWTGHL I HVAIP E SR LLDAGVAAADIP LPHP flnpdlmgqlypsfa A GLGP F FTG N W 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 231 NL YA Q npdssshlfgtsqgsgta ILT LL GG F HPQT Q SLWLTD M AHHHLAIA I LF L IAGHMYRTNFGIGHS I K DL LEAH IP 310
Cdd:pfam00223 237 GA YA D ------------------ ILT FK GG L HPQT G SLWLTD I AHHHLAIA V LF I IAGHMYRTNFGIGHS M K EI LEAH KG 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 311 PGG RL G R GHKGLY D T I NNS I H F QLGL A LA S LG VI T SL VA Q HMY S LP A Y AF IA Q D F TTQAAL Y THHQ Y I A GF I M T GAFAHG 390
Cdd:pfam00223 299 PGG FT G E GHKGLY E T L NNS W H A QLGL N LA M LG SV T II VA H HMY A LP P Y PY IA T D Y TTQAAL F THHQ W I G GF L M V GAFAHG 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 391 AIF FI RDY N PE Q N ED NVL A R M L D H KE AIISHLSW AS LFLGFHT L GLYVHND V M L AFG T PE KQ ----- IL I EP I FAQWIQ S 465
Cdd:pfam00223 379 AIF MV RDY D PE V N KN NVL D R V L E H RD AIISHLSW VC LFLGFHT F GLYVHND T M R AFG R PE DM fsdta IL L EP V FAQWIQ A 458
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 466 AHGK TS YGF DV L L S STSGP A F NAG RS --- I WLPG WLNAINENSNSLFLTI G PG DFLVHH A IA L G L H T T T LIL V KG A LDAR 542
Cdd:pfam00223 459 AHGK AL YGF NL L A S APGST A P NAG AG vsd V WLPG DAVNVGGKVSLFPIPL G TA DFLVHH I IA F G I H V T V LIL L KG V LDAR 538
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 543 G S K LMPDKKD F G YS FPCDGPGRGGTC D ISAWD AFY L AV FWM L NTI G WV T FY W HWK HIT - L W Q GNV --- S QF NE SS T Y LM G 618
Cdd:pfam00223 539 S S R LMPDKKD L G FR FPCDGPGRGGTC Q ISAWD HVF L GL FWM Y NTI S WV I FY F HWK MQS d V W G GNV itg G QF AQ SS I Y IN G 618
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 619 WLRD Y LW LN SSQ L IN G Y N pfgm NSLSV WAW MFL F GH L VWA TGF MFL I S W RGYWQELIE TLA WAH ERTP LA N LI rwkd K P V 698
Cdd:pfam00223 619 WLRD F LW AQ SSQ V IN S Y G ---- NSLSV YGL MFL G GH F VWA FSL MFL F S G RGYWQELIE SIV WAH NKLK LA P LI ---- Q P R 690
730 740
....*....|....*....|....*....
gi 2274917999 699 ALSIVQ A R L VG L AHF SV G Y I F T YA AF L IA 727
Cdd:pfam00223 691 ALSIVQ G R A VG V AHF LL G G I V T TW AF F IA 719
Name
Accession
Description
Interval
E-value
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-734
0e+00
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 1591.67
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 1 MALRFP R FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ N IFASHFGQLAIIFLWTSGNLFHVAWQGNFE T WVQD 80
Cdd:CHL00054 1 MALRFP K FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ K IFASHFGQLAIIFLWTSGNLFHVAWQGNFE A WVQD 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLI G GWLHLQPK 160
Cdd:CHL00054 81 PLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLI A GWLHLQPK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 161 WKP R VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP A SRGE Y VRWNNFL N VLPHPQGLGPLFTGQWNLYAQNPDSS 240
Cdd:CHL00054 161 WKP S VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIP E SRGE H VRWNNFL D VLPHPQGLGPLFTGQWNLYAQNPDSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 241 SHLFGTSQG S GTAILT L LGGFHPQTQSLWLTD M AHHHLAIA IL FLIAGHMYRTNFGIGHS I KD L LEAHIPPGGRLGRGHK 320
Cdd:CHL00054 241 SHLFGTSQG A GTAILT F LGGFHPQTQSLWLTD I AHHHLAIA VV FLIAGHMYRTNFGIGHS M KD I LEAHIPPGGRLGRGHK 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 321 GLYDTINNS I HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
Cdd:CHL00054 321 GLYDTINNS L HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNP 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
Cdd:CHL00054 401 EQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSS 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 481 T SG PAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:CHL00054 481 T NS PAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
Cdd:CHL00054 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW K DKPVALSIVQARLVGLAHFSVGYIFT 720
Cdd:CHL00054 641 NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW R DKPVALSIVQARLVGLAHFSVGYIFT 720
730
....*....|....
gi 2274917999 721 YAAFLIASTSGKFG 734
Cdd:CHL00054 721 YAAFLIASTSGKFG 734
psaB
TIGR01336 photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, ...
2-734
0e+00
photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130403
Cd Length: 734
Bit Score: 1436.29
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 2 A LR FP R FSQ G LAQDPTTRRIW F GIATAHDFESHD DI TEE R LYQ N IFASHFG Q LAIIFLWTSGNLFHVAWQGNFE T W V QDP 81
Cdd:TIGR01336 1 A TK FP K FSQ D LAQDPTTRRIW Y GIATAHDFESHD GM TEE N LYQ K IFASHFG H LAIIFLWTSGNLFHVAWQGNFE Q W I QDP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 82 LHVRPIAHAIWDPHFGQPAVEAFTRGGA LG PVNI A YSGVY Q WWYTIG L RTN E DLY T GALFLL F L S AL S L IG GWLHLQPK W 161
Cdd:TIGR01336 81 LHVRPIAHAIWDPHFGQPAVEAFTRGGA NY PVNI S YSGVY H WWYTIG M RTN S DLY A GALFLL I L A AL C L FA GWLHLQPK F 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 162 KP RV SWFKNAESRLNHHLSGLFGVSSLAW T GHL V HVAIPASRG EY V R WNNFL NV LPHP Q GL G P L FTG Q W NL YAQNPD SS S 241
Cdd:TIGR01336 161 KP SL SWFKNAESRLNHHLSGLFGVSSLAW A GHL I HVAIPASRG QH V G WNNFL ST LPHP A GL K P F FTG N W GV YAQNPD TA S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 242 H L FGTSQGSGTAILT L LGGFHPQTQSLWLTDMAHHHLAIA IL F L IAGHMYRTNFGIGHSIKD L LEAH I PP - G G RL G R GHK 320
Cdd:TIGR01336 241 H V FGTSQGSGTAILT F LGGFHPQTQSLWLTDMAHHHLAIA VI F I IAGHMYRTNFGIGHSIKD M LEAH K PP p S G KF G L GHK 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 321 GLYDTINNS I HFQLGLALA S LGVITSLVAQHMYSLP A YAFIAQDFTTQAALYTHHQYIAGF I M T GAFAHGAIFF I RDY N P 400
Cdd:TIGR01336 321 GLYDTINNS L HFQLGLALA C LGVITSLVAQHMYSLP P YAFIAQDFTTQAALYTHHQYIAGF L M V GAFAHGAIFF V RDY D P 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 401 EQN E DNVL A RML D HKEAIISHLSW A SLFLGFHTLGLYVHNDV ML AFGTPEKQILIEPIFAQWIQ S AHGKT S YGF D VLLSS 480
Cdd:TIGR01336 401 EQN K DNVL D RML E HKEAIISHLSW V SLFLGFHTLGLYVHNDV VV AFGTPEKQILIEPIFAQWIQ A AHGKT L YGF N VLLSS 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 481 T S GP A FN A GR S I WLPGWL N AIN E N S NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
Cdd:TIGR01336 481 P S SS A TT A YG S V WLPGWL D AIN S N T NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT L WQGNVSQFNESSTYLMGW L RDYLWLNSSQLINGYNP F GM 640
Cdd:TIGR01336 561 GPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT I WQGNVSQFNESSTYLMGW F RDYLWLNSSQLINGYNP Y GM 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 641 N S LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL A WAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGY IF T 720
Cdd:TIGR01336 641 N N LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL V WAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGY VL T 720
730
....*....|....
gi 2274917999 721 YAAFLIAST S GKFG 734
Cdd:TIGR01336 721 YAAFLIAST A GKFG 734
PsaB
COG5702 Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-734
0e+00
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 1284.06
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 1 MA LR FP R FSQ G LAQDPTTRRIW F GIATAHDFESHD DI TEE R LYQ N IFA S HFG Q LAIIFLW T SGNLFHVAWQGNFE T W V QD 80
Cdd:COG5702 1 MA TK FP K FSQ D LAQDPTTRRIW Y GIATAHDFESHD GM TEE N LYQ K IFA T HFG H LAIIFLW S SGNLFHVAWQGNFE Q W I QD 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 81 PL H VRPIAHAIWDPHFG Q PA V EAFT RG GA LG PVNI A YSG V Y Q WWYTIG L RTN E DLY T G AL FLL F L S A LS L IG GWLHLQPK 160
Cdd:COG5702 81 PL N VRPIAHAIWDPHFG K PA I EAFT QA GA SN PVNI C YSG L Y H WWYTIG M RTN T DLY Q G SI FLL L L A A VM L FA GWLHLQPK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 161 WK P RVS WFKNAESRLNHHL S GLFGVSSLAWTGHLVHVAIP A SRG EY V R W N NFL NV LPHP Q GL G P L FTG Q W NL YAQNPD SS 240
Cdd:COG5702 161 FR P SLA WFKNAESRLNHHL A GLFGVSSLAWTGHLVHVAIP E SRG QH V G W D NFL ST LPHP A GL A P F FTG N W GV YAQNPD TA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 241 S H L FGTSQG S GTAILT L LGGFHPQT Q SLWLTD M AHHHLAIA IL F L IAGHMYRTNFGIGHSIK DL LEAH IP PG G ---- RL G 316
Cdd:COG5702 241 G H A FGTSQG A GTAILT F LGGFHPQT E SLWLTD I AHHHLAIA VI F I IAGHMYRTNFGIGHSIK EI LEAH QG PG R sgff KT G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 317 R GHKGLYDTINNS I HFQLGLALA S LGVITSLVAQHMY S LP A YAFIAQD F TTQAALYTHHQYIAGF I M T GAFAHGAIFF I R 396
Cdd:COG5702 321 L GHKGLYDTINNS L HFQLGLALA C LGVITSLVAQHMY A LP P YAFIAQD Y TTQAALYTHHQYIAGF L M I GAFAHGAIFF V R 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 397 DY N PE Q N E DNVLARML D HKEAIISHLSW A SLFLGFHTLGLYVHNDV ML AFGTPEKQILIEP I FAQ W IQ S AHGK TS YG F D V 476
Cdd:COG5702 401 DY D PE A N K DNVLARML E HKEAIISHLSW V SLFLGFHTLGLYVHNDV VV AFGTPEKQILIEP V FAQ F IQ A AHGK VL YG I D T 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 477 LLS STSGP A FN A GR --- SI WLPGWL N A I N ENS NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 553
Cdd:COG5702 481 LLS NPDSV A ST A WP nyg NV WLPGWL E A V N NGA NSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDF 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 554 GY S FPCDGPGRGGTCDISAWD A FYLA V FWMLNTIGWVTFYWHWKH ITL W Q GNV S QFNESSTYLMGW L RDYLW L NS S QLIN 633
Cdd:COG5702 561 GY A FPCDGPGRGGTCDISAWD S FYLA T FWMLNTIGWVTFYWHWKH LSI W S GNV A QFNESSTYLMGW F RDYLW A NS A QLIN 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 634 GY N PFG M NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL A WAHERTPLANL I RWKDKPVALSIVQARLVGL A HF 713
Cdd:COG5702 641 GY S PFG T NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL V WAHERTPLANL V RWKDKPVALSIVQARLVGL T HF 720
730 740
....*....|....*....|.
gi 2274917999 714 S VGYI F TYAAFLIAST SGK F G 734
Cdd:COG5702 721 T VGYI V TYAAFLIAST ASL F P 741
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
8-727
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 1115.24
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 8 FSQ G LAQ D P - TTR R IW FGI ATAHDFESHD DI TEE r L YQN IF AS HFG Q LAIIFLW T SGNLFH V AW QG NFE T W VQ DPLHV R P 86
Cdd:pfam00223 1 FSQ D LAQ G P k TTR W IW NLH ATAHDFESHD GD TEE - L SRK IF SA HFG H LAIIFLW L SGNLFH G AW FS NFE A W LA DPLHV K P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 87 IAH AI W d PHFGQ PAVE AFT RG GA LG P - V N I A y SG VY QWW Y TIG LR TN ED LY T GA LF LL F L S AL S L IG GWLH LQ p K WK P RV 165
Cdd:pfam00223 80 IAH VV W - PHFGQ EILN AFT DV GA GF P g V Q I T - SG LF QWW R TIG MT TN GQ LY A GA IG LL I L A AL M L FA GWLH YH - K FA P KL 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 166 S WFKNAES R LNHHL S GLFG VS SLAWTGHL V HVAIP A SR GEYVRWNNFLNV LPHP --------------- Q GLGP L FTG Q W 230
Cdd:pfam00223 157 E WFKNAES M LNHHL A GLFG LG SLAWTGHL I HVAIP E SR LLDAGVAAADIP LPHP flnpdlmgqlypsfa A GLGP F FTG N W 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 231 NL YA Q npdssshlfgtsqgsgta ILT LL GG F HPQT Q SLWLTD M AHHHLAIA I LF L IAGHMYRTNFGIGHS I K DL LEAH IP 310
Cdd:pfam00223 237 GA YA D ------------------ ILT FK GG L HPQT G SLWLTD I AHHHLAIA V LF I IAGHMYRTNFGIGHS M K EI LEAH KG 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 311 PGG RL G R GHKGLY D T I NNS I H F QLGL A LA S LG VI T SL VA Q HMY S LP A Y AF IA Q D F TTQAAL Y THHQ Y I A GF I M T GAFAHG 390
Cdd:pfam00223 299 PGG FT G E GHKGLY E T L NNS W H A QLGL N LA M LG SV T II VA H HMY A LP P Y PY IA T D Y TTQAAL F THHQ W I G GF L M V GAFAHG 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 391 AIF FI RDY N PE Q N ED NVL A R M L D H KE AIISHLSW AS LFLGFHT L GLYVHND V M L AFG T PE KQ ----- IL I EP I FAQWIQ S 465
Cdd:pfam00223 379 AIF MV RDY D PE V N KN NVL D R V L E H RD AIISHLSW VC LFLGFHT F GLYVHND T M R AFG R PE DM fsdta IL L EP V FAQWIQ A 458
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 466 AHGK TS YGF DV L L S STSGP A F NAG RS --- I WLPG WLNAINENSNSLFLTI G PG DFLVHH A IA L G L H T T T LIL V KG A LDAR 542
Cdd:pfam00223 459 AHGK AL YGF NL L A S APGST A P NAG AG vsd V WLPG DAVNVGGKVSLFPIPL G TA DFLVHH I IA F G I H V T V LIL L KG V LDAR 538
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 543 G S K LMPDKKD F G YS FPCDGPGRGGTC D ISAWD AFY L AV FWM L NTI G WV T FY W HWK HIT - L W Q GNV --- S QF NE SS T Y LM G 618
Cdd:pfam00223 539 S S R LMPDKKD L G FR FPCDGPGRGGTC Q ISAWD HVF L GL FWM Y NTI S WV I FY F HWK MQS d V W G GNV itg G QF AQ SS I Y IN G 618
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 619 WLRD Y LW LN SSQ L IN G Y N pfgm NSLSV WAW MFL F GH L VWA TGF MFL I S W RGYWQELIE TLA WAH ERTP LA N LI rwkd K P V 698
Cdd:pfam00223 619 WLRD F LW AQ SSQ V IN S Y G ---- NSLSV YGL MFL G GH F VWA FSL MFL F S G RGYWQELIE SIV WAH NKLK LA P LI ---- Q P R 690
730 740
....*....|....*....|....*....
gi 2274917999 699 ALSIVQ A R L VG L AHF SV G Y I F T YA AF L IA 727
Cdd:pfam00223 691 ALSIVQ G R A VG V AHF LL G G I V T TW AF F IA 719
psaA
CHL00056 photosystem I P700 chlorophyll a apoprotein A1
8-727
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 635.24
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 8 FS QG LA QD P - TT RR IW FGI A T AHDF E SH DDIT EE r LYQNI F AS HFGQL A IIFLW T SG NL FH V A WQG N F E T W VQ DP L H VR P 86
Cdd:CHL00056 32 FS RT LA KG P d TT TW IW NLH A D AHDF D SH TSDL EE - ISRKV F SA HFGQL S IIFLW L SG MY FH G A RFS N Y E A W LS DP T H IK P 110
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 87 I A HAI W d P HF GQ PAVEAFTR GG AL G p VN I A y SG VY Q W W YTI G LRTNED LY TG A LFL L FLS AL S L IG GW L H LQ p K WK P RVS 166
Cdd:CHL00056 111 S A QVV W - P IV GQ EILNGDVG GG FR G - IQ I T - SG FF Q I W RAS G ITSELQ LY CT A IGA L VFA AL M L FA GW F H YH - K AA P KLA 186
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 167 WF KNA ES R LNHHL S GL F G VS SL A W T GH LV HV AI P A srgeyvrw N NF L NV -------- LPH ---------------- PQ GL 222
Cdd:CHL00056 187 WF QDV ES M LNHHL A GL L G LG SL S W A GH QI HV SL P I -------- N QL L DA gvdpkeip LPH efilnrdllaqlypsf AK GL 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 223 G P L FT GQ W NL Y AQ npdssshlfgtsqgsgta I LT LL GG FH P Q T QS LWLTD M AHHHLAIA I LFLIAGHMYRTN F GIGHS I K 302
Cdd:CHL00056 259 T P F FT LN W SE Y SD ------------------ F LT FR GG LN P V T GG LWLTD I AHHHLAIA V LFLIAGHMYRTN W GIGHS L K 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 303 DL LEAH IP P gg RL G R GHKGLY DTINN S I H F QL G L A LA S LG VI T SL VA Q HMYS L P A Y AFI A Q D FT TQ AA L Y THH QY I A GF I 382
Cdd:CHL00056 321 EI LEAH KG P -- FT G E GHKGLY EILTT S W H A QL A L N LA M LG SL T II VA H HMYS M P P Y PYL A T D YG TQ LS L F THH MW I G GF L 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 383 MT GA F AH G AIF FI RDY N P EQNED N V L A R M L D H KE AIISHL S W ASL FLGFH TL GLY V HND V M L A F G T P E ----- KQ I LIE P 457
Cdd:CHL00056 399 IV GA A AH A AIF MV RDY D P TTRYN N L L D R V L R H RD AIISHL N W VCI FLGFH SF GLY I HND T M S A L G R P Q dmfsd TA I QLQ P 478
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 458 IFAQWIQ SA H gktsygfd V L LSSTSG P AFN A GR S - I W LP G W L N A INENSNS L FLTI G PG DFLVHH AI A LGL H T T T LIL V K 536
Cdd:CHL00056 479 IFAQWIQ NT H -------- A L APGATA P GAT A ST S l T W GG G D L V A VGGKVAL L PIPL G TA DFLVHH IH A FTI H V T V LIL L K 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 537 G A L D AR G S K L M PDK KDF G YS FPCDGPGRGGTC DI SAWD AFY L AV FWM L N T I GW V T F YWH WK - HITL W ----- QG N V SQ -- 608
Cdd:CHL00056 551 G V L F AR S S R L I PDK ANL G FR FPCDGPGRGGTC QV SAWD HVF L GL FWM Y N S I SV V I F HFS WK m QSDV W gsisd QG V V TH it 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 609 --- F NE SS TYLM GWLRD Y LW LNS SQ L I NG Y N pfgm N SLS VWAWM FL FG H L VWA TGF MFL I S W RGYWQELIE TLA WAH ERT 685
Cdd:CHL00056 631 ggn F AQ SS ITIN GWLRD F LW AQA SQ V I QS Y G ---- S SLS AYGLF FL GA H F VWA FSL MFL F S G RGYWQELIE SIV WAH NKL 706
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 2274917999 686 PL A NL I rwkd K P V ALSIVQ A R L VG L AH FSV G Y I F T YA AF LI A 727
Cdd:CHL00056 707 KV A PA I ---- Q P R ALSIVQ G R A VG V AH YLL G G I A T TW AF FL A 744
PsaA
COG5701 Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
8-731
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 627.64
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 8 F SQG LA QD P - TT RR IW FGI A T AHDF ES H DDIT EE r LYQN IF AS HFG Q LA II F L W T SG NL FH V A WQG N FET W VQ DP LH V R P 86
Cdd:COG5701 34 F DRT LA KG P k TT TW IW NLH A L AHDF DT H TSDL EE - ISRK IF SA HFG H LA VV F I W L SG MF FH G A RFS N YTA W LA DP TG V K P 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 87 I A HAI W d P HF GQ PAVE A FTR GG AL G p VN I A y SG VY Q W W YTI G LRTNED LY TG A LFL L FLS AL S L IG GW L H LQ p K WK P RVS 166
Cdd:COG5701 113 S A QVV W - P IV GQ EILN A DVG GG FH G - IQ I T - SG LF Q M W RAW G ITNEFQ LY CT A IGA L VMA AL M L FA GW F H YH - K RA P KLE 188
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 167 WF K N A ES R LNHHL S GL F G VS SLAWTGHL V HV AI P -------- ASRGEYVRWNN FLN ------ VL P HP - Q G L GP L FT GQ W N 231
Cdd:COG5701 189 WF Q N V ES M LNHHL A GL L G LG SLAWTGHL I HV SL P vnalldag VAAADIPLPHE FLN pslmaq LY P GF a S G V GP F FT LN W G 268
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 232 LY aqnpdssshlfgtsqgsg TAI LT LL GG FH P Q T QS LWLTD M AHHHLAIA I LF L IAGHMYRTN F GIGHS I K DL LEAH IP P 311
Cdd:COG5701 269 AF ------------------ SDF LT FK GG LN P V T GG LWLTD I AHHHLAIA V LF I IAGHMYRTN W GIGHS M K EI LEAH KG P 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 312 GGRL -- GR GHKGLY DTINN S I H F QL GLA LA SL G VITSL VA Q HMY SL P A Y AFI A Q D FT TQ AA L Y THH QY I A GF IMT GA F AH 389
Cdd:COG5701 331 PLLF tg PE GHKGLY EVLTT S W H A QL AIN LA MM G SLSII VA H HMY AM P P Y PYL A T D YP TQ LS L F THH MW I G GF LIV GA A AH 410
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 390 G AIF FI RDY N P EQ N ED NVL A R M L D H KE AIISHL S W ASL FLGFH TL GLY V HND V M L A F G T P EKQ ----- I LIE P I FAQWIQ 464
Cdd:COG5701 411 A AIF MV RDY D P AV N QN NVL D R V L R H RD AIISHL N W VCI FLGFH SF GLY I HND T M R A L G R P QDM fsdta I QLQ P V FAQWIQ 490
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 465 SA H GKT sygfdvl LSSTSG P AFNAGR S IWLP G WLN A INENSNSLFLTI G PG DF LV HH AI A LGL H T T T LIL V KG A L D AR G S 544
Cdd:COG5701 491 NL H ASA ------- PGTATA P NAGGTV S EAFG G DVV A VGGKVAMMPIPL G TA DF MI HH IH A FTI H V T V LIL L KG V L F AR S S 563
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 545 K L M PDK KDF G YS FPCDGPGRGGTC DI SAWD AFY L AV FWM L N TIGW V T F YWH WK HITLWQ G N V ----------- SQ F NE SS 613
Cdd:COG5701 564 R L I PDK ANL G FR FPCDGPGRGGTC QV SAWD HVF L GL FWM Y N SLSV V I F HFS WK MQSDVW G T V nadgsvnhitg GN F AQ SS 643
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 614 TYLM GWLRD Y LW LN SSQ L IN G Y N pfgm NS LS VWAW MFL FG H L VWA TGF MFL I S W RGYWQELIE TLA WAH ERTPL A NL I rw 693
Cdd:COG5701 644 ITIN GWLRD F LW AQ SSQ V IN S Y G ---- SA LS AYGL MFL GA H F VWA FSL MFL F S G RGYWQELIE SIV WAH NKLKV A PA I -- 717
730 740 750
....*....|....*....|....*....|....*...
gi 2274917999 694 kd K P V ALSI V Q A R L VG L AH FSV G Y I F T YA AF LI A STSG 731
Cdd:COG5701 718 -- Q P R ALSI T Q G R A VG V AH YLL G G I A T TW AF FL A RLIA 753
psaA
TIGR01335 photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
8-727
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 613.89
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 8 FS QG LA QD P - TT RR IW FGI A T AHDF E SH DDIT E E r LYQN IF AS HFGQL AI IF L W T SG NL FH V A WQG N F E T W VQ DP L H VR P 86
Cdd:TIGR01335 35 FS RT LA KG P k TT TW IW NLH A D AHDF D SH TSDL E D - ISRK IF SA HFGQL SV IF I W L SG MY FH G A RFS N Y E A W LS DP T H IK P 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 87 I A HAI W d P HF GQ PAVEAFTR GG AL G p VN I A y SG VY Q W W YTI G LRTNED LY TG A LFL L FLSA L S L IG GW L H LQ p K WK P RVS 166
Cdd:TIGR01335 114 S A QVV W - P IV GQ EILNGDVG GG FH G - IQ I T - SG FF Q L W RAS G ITNELQ LY VT A IGG L VMAG L M L FA GW F H YH - K AA P KLE 189
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 167 WF K N A ES R LNHHL S GL F G VS SL A W T GH LV HV AI P A srgeyvrw N NF L NV -------- LPH PQG L GPLFTG Q wn LY AQNPD 238
Cdd:TIGR01335 190 WF Q N V ES M LNHHL A GL L G LG SL S W A GH QI HV SL P I -------- N KL L DA gvdpkdip LPH EFI L NRELMA Q -- LY PSFAS 259
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 239 SSSHL F GTSQ G SGTAI LT LL GG FH P Q T QS LWL T D M AHHHLAIA I LF L IAGHMYRTN F GIGHSIK DL LEAH IP P gg RL G R G 318
Cdd:TIGR01335 260 GLTPF F TLNW G AYSDF LT FR GG LN P V T GG LWL S D I AHHHLAIA V LF I IAGHMYRTN W GIGHSIK EI LEAH KG P -- FT G S G 337
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 319 HKGLY DTINN S I H F QL GLA LA S LG VITSL VA Q HMY SL P A Y AFI A Q D FT TQ AA L Y THH QY I A GF IMT GA F AHGAIF FI RDY 398
Cdd:TIGR01335 338 HKGLY EALTT S W H A QL AIN LA M LG SLSII VA H HMY AM P P Y PYL A T D YP TQ LS L F THH MW I G GF LIV GA A AHGAIF MV RDY 417
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 399 N P E QN ED NVL A R MLD H KE AIISHL S W ASL FLGFH TL GLY V HND V M L A F G T P EKQ ----- I LIE P I FAQWIQ SA H gktsyg 473
Cdd:TIGR01335 418 D P S QN YN NVL D R VIR H RD AIISHL N W VCI FLGFH SF GLY I HND T M R A L G R P QDM fsdta I QLQ P V FAQWIQ NL H ------ 491
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 474 fd V L LSSTSG P AFN A GR S IWLP G WLN A INENSNSLFLTI G PG DF L VHH AI A LGL H T T T LIL V KG A L D AR G S K L M PDK KDF 553
Cdd:TIGR01335 492 -- T L APGNTA P NAL A TT S YAFG G EVV A VGGKVAMMPIKL G TA DF M VHH IH A FTI H V T V LIL L KG V L F AR N S R L I PDK ANL 569
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 554 G YS FPCDGPGRGGTC DI S A WD AFY L AV FWM L N T I GW V T F YWH WK - HITL W ----- Q G N VS Q ----- F NE S STYLM GWLRD 622
Cdd:TIGR01335 570 G FR FPCDGPGRGGTC QV S G WD HVF L GL FWM Y N C I SV V I F HFS WK m QSDV W gtvsq N G L VS H itggn F AQ S AITIN GWLRD 649
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274917999 623 Y LW LNS SQ L I NG Y N pfgm N SLS VWAW MFL FG H LV WA TGF MFL I S W RGYWQELIE TLA WAH ERTPL A NL I rwkd K P V ALSI 702
Cdd:TIGR01335 650 F LW AQA SQ V I QS Y G ---- S SLS AYGL MFL GA H FI WA FSL MFL F S G RGYWQELIE SIV WAH NKLKV A PA I ---- Q P R ALSI 721
730 740
....*....|....*....|....*
gi 2274917999 703 V Q A R L VG L AH FSV G Y I F T YA AF LI A 727
Cdd:TIGR01335 722 I Q G R A VG V AH YLL G G I A T TW AF FL A 746
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
