NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2361364504|emb|CAI4392069|]
View 

BDF_1d_G0027140.mRNA.1.CDS.1 [Saccharomyces cerevisiae]

Protein Classification

glycogen-binding domain-containing protein( domain architecture ID 10120552)

glycogen-binding domain-containing protein similar to Saccharomyces cerevisiae cruciform DNA-recognizing protein 1 and signal transduction protein MDG1, which is involved in G-protein mediated signal transduction and in the regulation of polarized cell growth in pheromone-induced cells

Gene Ontology:  GO:0030246
SCOP:  4007532

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
E_set_AMPKbeta_like_N cd02859
N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain ...
19-92 5.40e-11

N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit; E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase.


:

Pssm-ID: 199889 [Multi-domain]  Cd Length: 80  Bit Score: 57.61  E-value: 5.40e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2361364504  19 ADKLVVTGEFDNWRHSdYVLQYDGSTQnYRVQIPRRKGQrsTMFKVVINDKkWVTLNYFDTVTDKSGYTNNILH 92
Cdd:cd02859    11 GKEVYVTGSFDNWQQP-IPLEKSGDGE-FSATVELPPGR--YEYKFIVDGE-WVHDPDLPTVTDEFGNLNNVLE 79
 
Name Accession Description Interval E-value
E_set_AMPKbeta_like_N cd02859
N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain ...
19-92 5.40e-11

N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit; E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase.


Pssm-ID: 199889 [Multi-domain]  Cd Length: 80  Bit Score: 57.61  E-value: 5.40e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2361364504  19 ADKLVVTGEFDNWRHSdYVLQYDGSTQnYRVQIPRRKGQrsTMFKVVINDKkWVTLNYFDTVTDKSGYTNNILH 92
Cdd:cd02859    11 GKEVYVTGSFDNWQQP-IPLEKSGDGE-FSATVELPPGR--YEYKFIVDGE-WVHDPDLPTVTDEFGNLNNVLE 79
 
Name Accession Description Interval E-value
E_set_AMPKbeta_like_N cd02859
N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain ...
19-92 5.40e-11

N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit; E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase.


Pssm-ID: 199889 [Multi-domain]  Cd Length: 80  Bit Score: 57.61  E-value: 5.40e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2361364504  19 ADKLVVTGEFDNWRHSdYVLQYDGSTQnYRVQIPRRKGQrsTMFKVVINDKkWVTLNYFDTVTDKSGYTNNILH 92
Cdd:cd02859    11 GKEVYVTGSFDNWQQP-IPLEKSGDGE-FSATVELPPGR--YEYKFIVDGE-WVHDPDLPTVTDEFGNLNNVLE 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH