NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|170285957|emb|CAQ19096|]
View 

cytochrome B, partial (mitochondrion) [Zosterops flavifrons macgillivrayi]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-102 9.93e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 220.16  E-value: 9.93e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLP 135
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-102 9.93e-73

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 220.16  E-value: 9.93e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-102 2.63e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 132.11  E-value: 2.63e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLN--K 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprE 104

                         90       100
                 ....*....|....*....|....
gi 170285957  79 ETWNVGVVLLLTLMATAFVGYVLP 102
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLP 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-102 6.17e-37

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 127.98  E-value: 6.17e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSY----- 75
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpre 121

                         90       100
                 ....*....|....*....|....*..
gi 170285957  76 LNketWNVGVVLLLTLMATAFVGYVLP 102
Cdd:COG1290  122 LN---WIIGVLLLLLTMAEAFTGYSLP 145
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-102 1.44e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 117.10  E-value: 1.44e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957    1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYG--SYLNK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|....
gi 170285957   79 ETWNVGVVLLLTLMATAFVGYVLP 102
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLP 119
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-102 9.93e-73

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 220.16  E-value: 9.93e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00131
cytochrome b; Provisional
 1-102 9.47e-65

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 199.88  E-value: 9.47e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00074
cytochrome b; Provisional
 1-102 2.00e-64

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 198.75  E-value: 2.00e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00100
cytochrome b; Provisional
 1-102 1.72e-61

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 191.39  E-value: 1.72e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00156
cytochrome b; Provisional
 1-102 1.58e-60

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 188.07  E-value: 1.58e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00191
cytochrome b; Provisional
 1-102 3.87e-60

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 187.43  E-value: 3.87e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLP 131
CYTB MTH00034
cytochrome b; Validated
 1-102 2.54e-57

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 180.67  E-value: 2.54e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 1-102 6.63e-57

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 179.72  E-value: 6.63e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 1-102 1.17e-54

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 173.71  E-value: 1.17e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 1-102 5.94e-45

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 148.70  E-value: 5.94e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 1-102 4.63e-44

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 146.39  E-value: 4.63e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 1-102 1.08e-42

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 142.75  E-value: 1.08e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-102 2.63e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 132.11  E-value: 2.63e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLN--K 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprE 104

                         90       100
                 ....*....|....*....|....
gi 170285957  79 ETWNVGVVLLLTLMATAFVGYVLP 102
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLP 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-102 6.17e-37

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 127.98  E-value: 6.17e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSY----- 75
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpre 121

                         90       100
                 ....*....|....*....|....*..
gi 170285957  76 LNketWNVGVVLLLTLMATAFVGYVLP 102
Cdd:COG1290  122 LN---WIIGVLLLLLTMAEAFTGYSLP 145
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-102 1.44e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 117.10  E-value: 1.44e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957    1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYG--SYLNK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|....
gi 170285957   79 ETWNVGVVLLLTLMATAFVGYVLP 102
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 1-102 5.06e-34

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 120.43  E-value: 5.06e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLP 131
CYTB MTH00086
cytochrome b; Provisional
 1-102 1.40e-28

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 105.41  E-value: 1.40e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100
                 ....*....|....*....|..
gi 170285957  81 WNVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 2-102 1.08e-22

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 89.66  E-value: 1.08e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   2 GSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100
                 ....*....|....*....|.
gi 170285957  82 NVGVVLLLTLMATAFVGYVLP 102
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 1-102 3.33e-16

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 70.51  E-value: 3.33e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 170285957  80 -TWNVGVVLLLTLMATAFVGYVLP 102
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 1-102 4.43e-12

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 59.35  E-value: 4.43e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170285957   1 FGSLLGICLITQIVTGLLLATHYTADTNLAFASVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100
                 ....*....|....*....|....
gi 170285957  80 -TWNVGVVLLLTLMATAFVGYVLP 102
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-102 3.89e-09

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 50.70  E-value: 3.89e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 170285957   56 SFFFICIYFHIGRGFYYGSYLNKE--TWNVGVVLLLTLMATAFVGYVLP 102
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH