NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|254748858|emb|CBA11147|]
View 

unnamed protein product [Homo sapiens]

Protein Classification

eS21 family ribosomal protein( domain architecture ID 10472478)

eS21 family ribosomal protein is involved in the regulation of protein synthesis and cell growth

Gene Ontology:  GO:0003735|GO:0006364

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S21e pfam01249
Ribosomal protein S21e;
1-80 4.77e-55

Ribosomal protein S21e;


:

Pssm-ID: 460133  Cd Length: 79  Bit Score: 164.23  E-value: 4.77e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254748858   1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDkVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVS 80
Cdd:pfam01249  1 MQNDAGELVDLYIPRKCSATNRLITAKDHASVQINVAEVD-ENGRMTGQFTTYALCGYIRRMGESDDALNRLAQKDGLLK 79
 
Name Accession Description Interval E-value
Ribosomal_S21e pfam01249
Ribosomal protein S21e;
1-80 4.77e-55

Ribosomal protein S21e;


Pssm-ID: 460133  Cd Length: 79  Bit Score: 164.23  E-value: 4.77e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254748858   1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDkVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVS 80
Cdd:pfam01249  1 MQNDAGELVDLYIPRKCSATNRLITAKDHASVQINVAEVD-ENGRMTGQFTTYALCGYIRRMGESDDALNRLAQKDGLLK 79
 
Name Accession Description Interval E-value
Ribosomal_S21e pfam01249
Ribosomal protein S21e;
1-80 4.77e-55

Ribosomal protein S21e;


Pssm-ID: 460133  Cd Length: 79  Bit Score: 164.23  E-value: 4.77e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254748858   1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDkVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVS 80
Cdd:pfam01249  1 MQNDAGELVDLYIPRKCSATNRLITAKDHASVQINVAEVD-ENGRMTGQFTTYALCGYIRRMGESDDALNRLAQKDGLLK 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH