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Conserved domains on  [gi|289169600|emb|CBA34795|]
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MatD protein [Dictyostelium discoideum]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HAP2-GCS1 super family cl11296
Male gamete fusion factor; The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative ...
461-655 2.11e-04

Male gamete fusion factor; The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative cell-specific protein 1). HAP2 is expressed only in the haploid sperm and is required for efficient guidance of the pollen tube to the ovules. In Arabidopsis the protein is a predicted membrane protein with an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2-GCS1 is found from plants to lower eukaryotes and is necessary for the fusion of the gametes in fertilization. Studies in the green alga Chlamydomonas and the malaria organizm Plasmodium showed that it is involved in a novel mechanism for gamete fusion where a first species-specific protein binds male and female gamete membranes together after which a second, broadly conserved protein, either directly or indirectly, causes fusion of the two membranes together. The broadly conserved protein is represented by this HAP2-GCS1 domain, conserved from plants to lower eukaryotes. In Plasmodium berghei the protein is expressed only in male gametocytes and gametes, having a male-specific function during the interaction with female gametes, and being indispensable for parasite fertilization. The gene in plants and eukaryotes might well have originated from acquisition of plastids from red algae.


The actual alignment was detected with superfamily member pfam10699:

Pssm-ID: 431445  Cd Length: 475  Bit Score: 44.75  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289169600  461 NGCNGINITYSDFYNQAS-CQLPQYSCSN---VHYFRDTQDQTQKINNNFNYLIGNSRSSINYLNQNllsieRLQKKLDL 536
Cdd:pfam10699 264 SSCNKIGVSYEAFRQQPNrCSAPFGSCLGnqlWDLRKQDLALLAAGRLGLALYSLGRPGGRSNSSLN-----NDNRSLQF 338
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289169600  537 SVSIYLTSLPILQPSIDQTSFsVNQDDISLIV---------------INFSFINNGSLNGDYSINISCNDTTNSLFDSGV 601
Cdd:pfam10699 339 EVLGVQNSLVTLEIAADDLAF-VYQRSPGKIVsaripdfealskggtLTVQVMNTGKVEASYGVTVTCSDNILPIQAQAV 417
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 289169600  602 -IEMNNTKEFSLNFPKSiTKSTKYYECNAnVLINNQpywtkfGKEIDSK-VYFHVI 655
Cdd:pfam10699 418 sIKPNESVIFSFPLNTL-TDQAGNASCTV-TLKNAL------GNIVDRReIKFNTT 465
 
Name Accession Description Interval E-value
HAP2-GCS1 pfam10699
Male gamete fusion factor; The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative ...
461-655 2.11e-04

Male gamete fusion factor; The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative cell-specific protein 1). HAP2 is expressed only in the haploid sperm and is required for efficient guidance of the pollen tube to the ovules. In Arabidopsis the protein is a predicted membrane protein with an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2-GCS1 is found from plants to lower eukaryotes and is necessary for the fusion of the gametes in fertilization. Studies in the green alga Chlamydomonas and the malaria organizm Plasmodium showed that it is involved in a novel mechanism for gamete fusion where a first species-specific protein binds male and female gamete membranes together after which a second, broadly conserved protein, either directly or indirectly, causes fusion of the two membranes together. The broadly conserved protein is represented by this HAP2-GCS1 domain, conserved from plants to lower eukaryotes. In Plasmodium berghei the protein is expressed only in male gametocytes and gametes, having a male-specific function during the interaction with female gametes, and being indispensable for parasite fertilization. The gene in plants and eukaryotes might well have originated from acquisition of plastids from red algae.


Pssm-ID: 431445  Cd Length: 475  Bit Score: 44.75  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289169600  461 NGCNGINITYSDFYNQAS-CQLPQYSCSN---VHYFRDTQDQTQKINNNFNYLIGNSRSSINYLNQNllsieRLQKKLDL 536
Cdd:pfam10699 264 SSCNKIGVSYEAFRQQPNrCSAPFGSCLGnqlWDLRKQDLALLAAGRLGLALYSLGRPGGRSNSSLN-----NDNRSLQF 338
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289169600  537 SVSIYLTSLPILQPSIDQTSFsVNQDDISLIV---------------INFSFINNGSLNGDYSINISCNDTTNSLFDSGV 601
Cdd:pfam10699 339 EVLGVQNSLVTLEIAADDLAF-VYQRSPGKIVsaripdfealskggtLTVQVMNTGKVEASYGVTVTCSDNILPIQAQAV 417
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 289169600  602 -IEMNNTKEFSLNFPKSiTKSTKYYECNAnVLINNQpywtkfGKEIDSK-VYFHVI 655
Cdd:pfam10699 418 sIKPNESVIFSFPLNTL-TDQAGNASCTV-TLKNAL------GNIVDRReIKFNTT 465
 
Name Accession Description Interval E-value
HAP2-GCS1 pfam10699
Male gamete fusion factor; The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative ...
461-655 2.11e-04

Male gamete fusion factor; The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative cell-specific protein 1). HAP2 is expressed only in the haploid sperm and is required for efficient guidance of the pollen tube to the ovules. In Arabidopsis the protein is a predicted membrane protein with an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2-GCS1 is found from plants to lower eukaryotes and is necessary for the fusion of the gametes in fertilization. Studies in the green alga Chlamydomonas and the malaria organizm Plasmodium showed that it is involved in a novel mechanism for gamete fusion where a first species-specific protein binds male and female gamete membranes together after which a second, broadly conserved protein, either directly or indirectly, causes fusion of the two membranes together. The broadly conserved protein is represented by this HAP2-GCS1 domain, conserved from plants to lower eukaryotes. In Plasmodium berghei the protein is expressed only in male gametocytes and gametes, having a male-specific function during the interaction with female gametes, and being indispensable for parasite fertilization. The gene in plants and eukaryotes might well have originated from acquisition of plastids from red algae.


Pssm-ID: 431445  Cd Length: 475  Bit Score: 44.75  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289169600  461 NGCNGINITYSDFYNQAS-CQLPQYSCSN---VHYFRDTQDQTQKINNNFNYLIGNSRSSINYLNQNllsieRLQKKLDL 536
Cdd:pfam10699 264 SSCNKIGVSYEAFRQQPNrCSAPFGSCLGnqlWDLRKQDLALLAAGRLGLALYSLGRPGGRSNSSLN-----NDNRSLQF 338
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289169600  537 SVSIYLTSLPILQPSIDQTSFsVNQDDISLIV---------------INFSFINNGSLNGDYSINISCNDTTNSLFDSGV 601
Cdd:pfam10699 339 EVLGVQNSLVTLEIAADDLAF-VYQRSPGKIVsaripdfealskggtLTVQVMNTGKVEASYGVTVTCSDNILPIQAQAV 417
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 289169600  602 -IEMNNTKEFSLNFPKSiTKSTKYYECNAnVLINNQpywtkfGKEIDSK-VYFHVI 655
Cdd:pfam10699 418 sIKPNESVIFSFPLNTL-TDQAGNASCTV-TLKNAL------GNIVDRReIKFNTT 465
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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