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Conserved domains on  [gi|260652608|emb|CBG75741|]
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putative lipoprotein [Streptomyces scabiei 87.22]

Protein Classification

DUF4232 domain-containing protein( domain architecture ID 10623787)

DUF4232 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4232 pfam14016
Protein of unknown function (DUF4232); This family of proteins is functionally uncharacterized. ...
 49-178 6.52e-18

Protein of unknown function (DUF4232); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.


:

Pssm-ID: 433646  Cd Length: 130  Bit Score: 75.85  E-value: 6.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260652608   49 CSQKVLGVSATKEPAdsKDARHLLLTVQNAGDKKCNLYRYPLVRL-GAGRTTAPVIKESDATPGVPVTLAPGQEAYAALL 127
Cdd:pfam14016   1 CTASDLKVTVGSDGA--AGTRYVLLTLTNTGSRPCTLYGYPGVSLvDADGQQVGAPAEREGPAAPPVTLAPGESAYAGLR 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 260652608  128 VNGPMDVYEAKSITLSLQGSQSGSTAGKPIDVPMPVPTLYANDFQ-RVTYWT 178
Cdd:pfam14016  79 WTNVGGGGGGECVPAGLRVYPPDGTASLTVPPDLGCGGTDVDGGQlTVTPWQ 130
 
Name Accession Description Interval E-value
DUF4232 pfam14016
Protein of unknown function (DUF4232); This family of proteins is functionally uncharacterized. ...
 49-178 6.52e-18

Protein of unknown function (DUF4232); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.


Pssm-ID: 433646  Cd Length: 130  Bit Score: 75.85  E-value: 6.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260652608   49 CSQKVLGVSATKEPAdsKDARHLLLTVQNAGDKKCNLYRYPLVRL-GAGRTTAPVIKESDATPGVPVTLAPGQEAYAALL 127
Cdd:pfam14016   1 CTASDLKVTVGSDGA--AGTRYVLLTLTNTGSRPCTLYGYPGVSLvDADGQQVGAPAEREGPAAPPVTLAPGESAYAGLR 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 260652608  128 VNGPMDVYEAKSITLSLQGSQSGSTAGKPIDVPMPVPTLYANDFQ-RVTYWT 178
Cdd:pfam14016  79 WTNVGGGGGGECVPAGLRVYPPDGTASLTVPPDLGCGGTDVDGGQlTVTPWQ 130
 
Name Accession Description Interval E-value
DUF4232 pfam14016
Protein of unknown function (DUF4232); This family of proteins is functionally uncharacterized. ...
 49-178 6.52e-18

Protein of unknown function (DUF4232); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.


Pssm-ID: 433646  Cd Length: 130  Bit Score: 75.85  E-value: 6.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260652608   49 CSQKVLGVSATKEPAdsKDARHLLLTVQNAGDKKCNLYRYPLVRL-GAGRTTAPVIKESDATPGVPVTLAPGQEAYAALL 127
Cdd:pfam14016   1 CTASDLKVTVGSDGA--AGTRYVLLTLTNTGSRPCTLYGYPGVSLvDADGQQVGAPAEREGPAAPPVTLAPGESAYAGLR 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 260652608  128 VNGPMDVYEAKSITLSLQGSQSGSTAGKPIDVPMPVPTLYANDFQ-RVTYWT 178
Cdd:pfam14016  79 WTNVGGGGGGECVPAGLRVYPPDGTASLTVPPDLGCGGTDVDGGQlTVTPWQ 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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