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Conserved domains on  [gi|577007681|emb|CCF79155|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Kinixys erosa]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-216 2.95e-122

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 354.12  E-value: 2.95e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00124 242 GIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00124 322 TSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATL 401

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWGM 216
Cdd:MTH00124 402 ITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-216 2.95e-122

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 354.12  E-value: 2.95e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00124 242 GIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00124 322 TSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATL 401

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWGM 216
Cdd:MTH00124 402 ITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-206 1.56e-37

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 135.98  E-value: 1.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPL-SKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:COG1008  258 GLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHG 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:COG1008  338 LITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGL 417

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 577007681 160 LITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLL 206
Cdd:COG1008  418 ILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-159 3.19e-35

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 125.89  E-value: 3.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681    1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:pfam00361 131 GLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGL 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   81 TSSMLFCLA-NTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:pfam00361 211 FSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-192 1.54e-31

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 119.66  E-value: 1.54e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681    1 GIIRITMSLDP-LSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:TIGR01972 252 GFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHG 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:TIGR01972 332 LITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGI 411

                         170       180       190
                  ....*....|....*....|....*....|....
gi 577007681  160 LITAIYTLYMLITTQWGE-TPPHMKSIPPTHTRE 192
Cdd:TIGR01972 412 VLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGRE 445
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-216 2.95e-122

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 354.12  E-value: 2.95e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00124 242 GIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00124 322 TSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATL 401

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWGM 216
Cdd:MTH00124 402 ITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-217 1.95e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 326.49  E-value: 1.95e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00068 242 GILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00068 322 TSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTL 401

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWGMF 217
Cdd:MTH00068 402 ITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-218 1.26e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 311.83  E-value: 1.26e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00110 242 GMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00110 322 TSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNML 401

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWGMFY 218
Cdd:MTH00110 402 ITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-215 2.32e-90

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 272.98  E-value: 2.32e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00127 243 GMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGL 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00127 323 TSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTL 402

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWG 215
Cdd:MTH00127 403 ITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-213 1.70e-80

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 247.16  E-value: 1.70e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-213 2.91e-64

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 205.59  E-value: 2.91e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIR-ITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:MTH00044 243 GLIRlINLFSLPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHG 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:MTH00044 323 LVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLAT 402

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 577007681 160 LITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00044 403 VFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNII 456
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-213 3.93e-59

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 191.91  E-value: 3.93e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00163 230 GLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGL 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00163 310 CSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSF 389

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00163 390 FSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-217 7.19e-55

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 180.42  E-value: 7.19e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00150 201 GILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGF 280

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00150 281 CSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVF 360

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELIWGMF 217
Cdd:MTH00150 361 LSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFMWI 417
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-213 2.30e-51

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 171.85  E-value: 2.30e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00014 236 GLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGL 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00014 316 CSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSF 395

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00014 396 LAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-213 1.98e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 161.69  E-value: 1.98e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:MTH00205 234 GLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGL 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:MTH00205 314 CSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISF 393

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 577007681 161 ITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00205 394 LSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-206 1.56e-37

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 135.98  E-value: 1.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPL-SKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:COG1008  258 GLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHG 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:COG1008  338 LITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGL 417

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 577007681 160 LITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLL 206
Cdd:COG1008  418 ILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-159 3.19e-35

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 125.89  E-value: 3.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681    1 GIIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGL 80
Cdd:pfam00361 131 GLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGL 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   81 TSSMLFCLA-NTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:pfam00361 211 FSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-192 1.54e-31

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 119.66  E-value: 1.54e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681    1 GIIRITMSLDP-LSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:TIGR01972 252 GFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHG 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:TIGR01972 332 LITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGI 411

                         170       180       190
                  ....*....|....*....|....*....|....
gi 577007681  160 LITAIYTLYMLITTQWGE-TPPHMKSIPPTHTRE 192
Cdd:TIGR01972 412 VLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGRE 445
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-213 2.96e-28

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 110.68  E-value: 2.96e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPL-SKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:PRK05846 260 GLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHG 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:PRK05846 340 LSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGL 419

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 577007681 160 LITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:PRK05846 420 ILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPL 473
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-213 3.73e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 107.70  E-value: 3.73e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPL-SKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:MTH00226 279 GLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHG 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:MTH00226 359 IVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGV 438

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 577007681 160 LITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00226 439 ILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFI 492
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-213 6.89e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 106.69  E-value: 6.89e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAM-ALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:MTH00204 258 GFLRFSWPLFPAASEYFAPLIVMlSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHG 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:MTH00204 338 FVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGM 417

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 577007681 160 LITAIYTLYMLITTQWGETPPHMKSIPPTHTREHLLMTLHILPMMLLTTKPELI 213
Cdd:MTH00204 418 VWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-169 5.12e-26

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 104.36  E-value: 5.12e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPL-SKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:MTH00217 255 GFIRFSWPLLPEaSEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHG 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 159
Cdd:MTH00217 335 LVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGM 414

                        170
                 ....*....|
gi 577007681 160 LITAIYTLYM 169
Cdd:MTH00217 415 VLSAGYSIYL 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-194 2.78e-18

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 82.44  E-value: 2.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MA-MALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:PRK06473 254 GLLRFGVGLFPEAWVYLAPWLAtWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHG 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIHSRTLLLTR---NMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTG 156
Cdd:PRK06473 334 LISALLFLLVGVVYKKTGSRDVDVLRgllNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCM 413

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 577007681 157 LGTLITAIYTLYMLITTQWGETPPHMKSIPPTHTREHL 194
Cdd:PRK06473 414 IGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERL 451
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 12-171 3.02e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 81.88  E-value: 3.02e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  12 LSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANT 91
Cdd:MTH00094 208 LNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGE 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  92 NYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITAIYTLYMLI 171
Cdd:MTH00094 288 FYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIV 367
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-174 1.49e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 80.19  E-value: 1.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDP--LSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAH 78
Cdd:COG0651  254 AILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNH 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  79 GLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGL- 157
Cdd:COG0651  334 ALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLl 413

                        170
                 ....*....|....*..
gi 577007681 158 GTLITAIYTLYMLITTQ 174
Cdd:COG0651  414 SSLLTLAYFVRIFGRAQ 430
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-170 7.95e-16

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 75.37  E-value: 7.95e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP-*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHG 79
Cdd:CHL00011 260 GLIRINMELLPHAHSIFSPwLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHG 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  80 LTSSMLFCLANTNYERIhsRTLLLTR--NMQLSLPLMGLWWLLASLTNMALPPTINLMGELT----IIAS---LFNWSNI 150
Cdd:CHL00011 340 FIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIITSqkyLLMPKIL 417

                        170       180
                 ....*....|....*....|
gi 577007681 151 TILMTGLGTLITAIYTLYML 170
Cdd:CHL00011 418 ITFVMAIGMILTPIYLLSML 437
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 38-170 2.12e-15

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 74.30  E-value: 2.12e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  38 QTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLW 117
Cdd:PRK12561 272 QDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFAL 351

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681 118 WLLASLTNMALPPTINLMGELTI---IASLFNWSN----ITILMTGLGTLITAIYTLYML 170
Cdd:PRK12561 352 FTASSMASLALPGMSGFVSELTVflgITSSDVYSStfrtITILLAAVGLILTPIYLLSML 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-207 5.24e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.21  E-value: 5.24e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSL----DPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMI 76
Cdd:PRK08375 251 ALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  77 AHGLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLF---NWSNITIL 153
Cdd:PRK08375 331 HHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVL 410

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 577007681 154 MtgLGTLITAIYTLYMLITTQWGETPPHMksiPPTHTREHLLMTLHILPMMLLT 207
Cdd:PRK08375 411 L--ASSLLALLYFLRIWYRAFFGPPPPGS---EAPKQEAPLGMLAPSLALALLS 459
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-218 2.16e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 65.38  E-value: 2.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   2 IIRITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLT 81
Cdd:PRK12667 280 IFGISPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIA 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  82 SSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSN-ITILMTGLGTL 160
Cdd:PRK12667 360 KSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFyLPALVLLIASA 439

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 577007681 161 ITAIYTLYMLITTQWGETpphmKSIPPTHTREHLLMTLHILPMMLLTtkpeLIWGMFY 218
Cdd:PRK12667 440 ISLVGYFRAWYSLFFGKP----KSGEEVEHKESPSMSVVILVLALAV----LILGILA 489
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 38-170 1.65e-11

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 62.80  E-value: 1.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  38 QTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLW 117
Cdd:PRK02546 300 QRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAM 379

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681 118 WLLASLTNMALPPTINLMGELTIIASL-------FNWSNITILMTGLGTLITAIYTLYML 170
Cdd:PRK02546 380 WTACSLASLALPGMSGFVAELMVFVGFatsdaytLPFRVVVVFLAAVGVILTPIYLLSML 439
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 21-206 1.67e-11

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 62.64  E-value: 1.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  21 MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRT 100
Cdd:PRK06458 285 LIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRD 364

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681 101 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN---WSNITILMTGLGTLITAIytLYMLITTQWGE 177
Cdd:PRK06458 365 INVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAAL--VRRVAGMVFGE 442

                        170       180
                 ....*....|....*....|....*....
gi 577007681 178 TPPHMKsippthtrEHLLMTLHILPMMLL 206
Cdd:PRK06458 443 PPEAVN--------RGDLGWLTTSPMFVH 463
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 29-206 5.46e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 61.32  E-value: 5.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  29 IMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQtqwSYTGSITLMIAHGLTSSMLFCLA-----NTNyerihsrtlll 103
Cdd:COG1009  287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAgsvihATG----------- 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681 104 TRNM-QLS-----LPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL---ITAIYTLYMLITTQ 174
Cdd:COG1009  353 TRDIrKMGglrkkMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVF 432

                        170       180       190
                 ....*....|....*....|....*....|...
gi 577007681 175 WGETPPHmksiPPTHTRE-HLLMTlhiLPMMLL 206
Cdd:COG1009  433 FGKPRPK----TPKHPHEsPWLMT---LPLVVL 458
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-187 3.13e-10

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 58.96  E-value: 3.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*mAMALWG---VIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIA 77
Cdd:PRK07363 254 GLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMIS 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  78 HGLTSSMLFCLANTNYERIHSRTLLLTR---NMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILM 154
Cdd:PRK07363 332 HGLILALLFHLVGIVERKVGTRDLDVLNglmNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLL 411

                        170       180       190
                 ....*....|....*....|....*....|...
gi 577007681 155 TGLGTLITAIYTLYMLITTQWGETPPHMKSIPP 187
Cdd:PRK07363 412 CIVASGLTAVYFVILLNRTCFGRLDNKLAYYPK 444
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 21-175 2.13e-09

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 56.70  E-value: 2.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  21 MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRT 100
Cdd:PRK08377 277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTE 356

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 577007681 101 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITAIYTLYMLITTQW 175
Cdd:PRK08377 357 IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMW 431
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 36-187 4.87e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 52.61  E-value: 4.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  36 LRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMG 115
Cdd:PRK12647 278 VRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITA 357

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 577007681 116 LWWLLASLTNMALPPTINLMGELTIIASLFN---WSNITILMTGLGTLITAIYTLYMLITTQWG---ETPPHMKSIPP 187
Cdd:PRK12647 358 AAALLAALSMAGLPPLFGFLAKELIYEALLEaplWSLILTVAAVLGNALMVAVAFLVGIKPFLGklvETPKHPHEAPV 435
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 4-160 8.92e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 51.51  E-value: 8.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   4 RITMSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLV---IAATLMQTQWSYTGSITLMIAHGL 80
Cdd:PRK06525 259 RAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMffgLSLAILGSRLALEGSIAYIFNHAF 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 160
Cdd:PRK06525 339 AKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-166 5.23e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 49.35  E-value: 5.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  21 MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRT 100
Cdd:PRK12662 283 MILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTK 362

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 577007681 101 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNwSN--ITILMTGLGTLITAIYT 166
Cdd:PRK12662 363 LEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK-SNawIGLVVLLVGSGLSVIYV 429
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 24-170 8.92e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 48.66  E-value: 8.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  24 ALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRTLLL 103
Cdd:PRK06589 287 PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDK 366

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 577007681 104 TRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNIT--ILMTGLGTLITAIYTLYML 170
Cdd:PRK06589 367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsIIVMLVVIASSILSALYLL 435
PRK12650 PRK12650
DUF4040 family protein;
29-188 9.96e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.89  E-value: 9.96e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  29 IMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRTLLLTRNMQ 108
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681 109 LSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLF-----NWSNITILMT-GLGTLITAIYTL-YMLITTQWGETP-P 180
Cdd:PRK12650 364 RRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVVLLLVGaALGAVFTFAYSArLVLGAFVDGPRDmS 443


                 ....*...
gi 577007681 181 HMKSIPPT 188
Cdd:PRK12650 444 HVKEAPVS 451
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 21-145 9.23e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.88  E-value: 9.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  21 MAMALWGVIMTssicLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLM-----------IAHGLTSSMLFCLA 89
Cdd:PRK08667 278 SISALLGVIYA----LKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTA 353

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 577007681  90 NTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLF 145
Cdd:PRK08667 354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-162 9.45e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 9.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRITMSLDPLSKTLSYP*MAMALWGVImtssICLRQTDLKSLIAYSSVSHMGLVIAATLmqtqwsyTGSItLMIAHGL 80
Cdd:PRK07234 233 PLVRCALDVPGLDLIVRIFGVGTALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPL-------VGGL-YALAHGL 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  81 TSSMLFCLANTnyerIHSRTllLTRNMQLSLPlMGLWWLL--ASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLG 158
Cdd:PRK07234 301 VKSTLFLCAGA----LPSRN--FTELISQMLG-IGKWIPLtmASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVG 373


                 ....
gi 577007681 159 TLIT 162
Cdd:PRK07234 374 TAAS 377
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
36-82 4.58e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 43.66  E-value: 4.58e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 577007681  36 LRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTS 82
Cdd:PRK05777 289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 36-82 7.10e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 7.10e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 577007681  36 LRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTS 82
Cdd:COG1007  288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK12646 PRK12646
DUF4040 family protein;
12-206 2.41e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 41.66  E-value: 2.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  12 LSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLV-----IAATLMQTQWSYTGSITLMIA--------- 77
Cdd:PRK12646 269 LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQQDAIASIYVFVLfaalfhlmn 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  78 HGLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNI------- 150
Cdd:PRK12646 349 HAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLsqfslis 428

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 577007681 151 TILMTGLG---TLITAIYTLYMLITTQWGetPPHMKSIPPTHTREHLLMTLHILPMMLL 206
Cdd:PRK12646 429 MIIIVFIGviaSIFTFTYALYMVKEVFWG--KYDSKVFTKKNIHEPWLFSLPSLILMVL 485
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 36-176 4.27e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.68  E-value: 4.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  36 LRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTnyerIHSRTllLTRNM-QLS---- 110
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGI----IDHST--GTRDIrKLSglgr 359

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 577007681 111 -LPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN------WSNITILMTGLGTLITAIYTLYMLittqWG 176
Cdd:PRK12644 360 rQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHdgalgpAGPVVLAGIVLGSILTVAYSLRFL----WG 428
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 12-169 1.13e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 39.10  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  12 LSKTLSYP*MAMALWGVIMTSSIC-----LRQTDLKSLIAYSSVSHMGLVIAATLmqtqWSYTGSITLMIAHGLTS-SML 85
Cdd:MTH00144 134 LSNFLDLYWLAYLLCVISVLSALVgsiggLNQTQVRALLAYSSISHTGWMLVAIL----HGSWLMWMYFLIYIVSSgFLF 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  86 FCLANTNYERIHSRTllltrnMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWS-NITILMTGLGTLITAI 164
Cdd:MTH00144 210 FSLWSGDSGSMKDLG------SLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSpLLLILLLLLGSLISLF 283


                 ....*
gi 577007681 165 YTLYM 169
Cdd:MTH00144 284 FYLSV 288
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
21-130 2.72e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.09  E-value: 2.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  21 MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERIHSRT 100
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                         90       100       110
                 ....*....|....*....|....*....|
gi 577007681 101 LLLTRNMQLSLPLMGLWWLLASLTNMALPP 130
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPP 379
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 15-86 4.26e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 37.67  E-value: 4.26e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 577007681  15 TLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAHGLTSSMLF 86
Cdd:PRK08668 270 LFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-206 4.70e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 37.43  E-value: 4.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681   1 GIIRIT--MSLDPLSKTLSYP*MAMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQWSYTGSITLMIAH 78
Cdd:PRK08676 255 GILRLSalLRQSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAH 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577007681  79 GLTSSMLFCLANTNYERIHSRTLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLG 158
Cdd:PRK08676 335 SLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLL 414

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 577007681 159 TLITAIYTLYMLITTqWGETPPHMKSIPPTHTRehLLMTLHILPMMLL 206
Cdd:PRK08676 415 LLLAASSFAIFLLKA-FTRVSEGNADRPVFRTP--LSMKLPIVIILAL 459
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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